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* [svn-r14185] Description:Quincey Koziol2007-10-043-27/+28
| | | | | | | | | | | | | | | | | | | | | Move H5Aopen_name() routine to deprecated symbol section and replace internal usage with H5Aopen(). Add simple regression test for H5Aopen_name() to deprecated routine test. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14184] Description:Quincey Koziol2007-10-043-3/+3
| | | | | | | | | | | | | | | | | | | | Move H5Aopen_idx() into deprecated symbols section, replacing all internal usage with H5Aopen_by_idx(). Add simple regression test for H5Aopen_idx(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14183] Description:Quincey Koziol2007-10-043-18/+22
| | | | | | | | | | | | | | | | | | Move H5Aget_num_attrs() into deprecated routines section, replacing all internal usage with H5Oget_info(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14182] Pedro Vicente Nunes2007-10-048-26/+217
| | | | | | | Added support for displaying several iteration orders on dataset attributes, 4 new tests in test script (name ascending, name descending, creation_order ascending, creation_order descending) New h5 file is made on the generator program Tested: windows, linux
* [svn-r14180] Description:Quincey Koziol2007-10-045-1001/+1004
| | | | | | | | | | | | | | | | | | | Make H5Aiterate() versioned and change all internal use to H5Aiterate2() Leave some regression tests that exercise H5Aiterate1() Fix attribute display in h5dump & h5ls to be "by name" by default Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14178] code cleaning:Pedro Vicente Nunes2007-10-021-62/+0
| | | | | removed one unused function tested: linux
* [svn-r14177] bug fix: Pedro Vicente Nunes2007-10-021-6/+6
| | | | | uncomment code that cleans output files, that was accidently left commented tested: linux
* [svn-r14174] new h5dump usage to include -q and -zPedro Vicente Nunes2007-10-022-12/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | tested: windows, linux, solaris 5.10 usage: h5dump [OPTIONS] file OPTIONS -h, --help Print a usage message and exit -n, --contents Print a list of the file contents and exit -B, --bootblock Print the content of the boot block -H, --header Print the header only; no data is displayed -A, --onlyattr Print the header and value of attributes -i, --object-ids Print the object ids -r, --string Print 1-byte integer datasets as ASCII -e, --escape Escape non printing characters -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute -d P, --dataset=P Print the specified dataset -y, --noindex Do not print array indices with the data -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -t P, --datatype=P Print the specified named datatype -w N, --width=N Set the number of columns of output -q Q, --sort_by=Q Sort groups and attributes by index Q -z Z, --sort_order=Z Sort groups and attributes by order Z -x, --xml Output in XML using Schema -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. Thus, the options mirror those for performing a hyperslab selection. The START and COUNT parameters are mandatory if you do subsetting. The STRIDE and BLOCK parameters are optional and will default to 1 in each dimension. -s L, --start=L Offset of start of subsetting selection -S L, --stride=L Hyperslab stride -c L, --count=L Number of blocks to include in selection -k L, --block=L Size of block in hyperslab D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without the file driver flag, the file will be opened with each driver in turn and in the order specified above until one driver succeeds in opening the file. F - is a filename. P - is the full path from the root group to the object. N - is an integer greater than 1. L - is a list of integers the number of which are equal to the number of dimensions in the dataspace being queried U - is a URI reference (as defined in [IETF RFC 2396], updated by [IETF RFC 2732]) B - is the form of binary output: MEMORY for a memory type, FILE for the file type, LE or BE for pre-existing little or big endian types. Must be used with -o (output file) and it is recommended that -d (dataset) is used Q - is the sort index type. It can be "creation_order" or "name" (default) Z - is the sort order type. It can be "descending" or "ascending" (default) Examples: 1) Attribute foo of the group /bar_none in file quux.h5 h5dump -a /bar_none/foo quux.h5 2) Selecting a subset from dataset /foo in file quux.h5 h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' using a litt le-endian type h5dump -d /dset -b LE -o out.bin quux.h5
* [svn-r14173] Pedro Vicente Nunes2007-10-025-16/+43
| | | | | | | | | | | | | | | | | | | bug fix the binary option expects a full path in -o TOOLTEST tbin1.ddl -d integer -o $TESTDIR/out1.bin -b LE tbinary.h5 and it prints it in the expected output , making it absolutely not portable Solution: made a special macro function TOOLTEST1 identical to TOOLTEST except that it does not print the Expected output header ############################# Expected output for 'h5dump -d integer -o /home/pvn/kagiso/build_hdf5/tools/h5dump/../testfiles/out1.bin -b LE tbinary.h5' ############################# Tested : linux
* [svn-r14172] Pedro Vicente Nunes2007-10-0218-213/+189
| | | | | | | | | 1) added 5 new tests for the group creation order 2) modified the h5dump test script to automatically generated non existing (new) output files 3) cleaning of unused DDL files 4) new modified DDL files include tcomp-3.ddl ( new form of named datatype) and the binary output files tested : linux
* [svn-r14171] Pedro Vicente Nunes2007-10-021-1/+0
| | | | | | | | bug fix: the new option --sort_by clashes with the existing abreviated form of soft-link "so" solution: eliminate the form "so" tested: windows, linux
* [svn-r14168] bug fix:Pedro Vicente Nunes2007-10-021-37/+31
| | | | | | | | groups and creation order: if there is a request to do H5_INDEX_CRT_ORDER and this flag is set in the group, then, sort by creation order, otherwise by name tested: windows, linux
* [svn-r14167] Pedro Vicente Nunes2007-10-011-33/+145
| | | | | | | | | | | | Added 2 new switch flags for sort parameters of groups. -q sort_by [creation_order | name] -z sort_order [ascending | descending ] Added extra parameter to dump_group of type H5_iter_order_t to control the iteration order, to be passed to H5Literate. Note : code under development, tests not added yet and flags NOT added to usage Tested : windows, linux
* [svn-r14164] Pedro Vicente Nunes2007-10-013-53/+386
| | | | | | | | | | | | | | | first batch for displaying groups in creation order 1) Added extra parameter to dump_group of type H5_index_t , to be passed to H5Literate. When a group is tried to be displayed, an inquiry of its creation properties is made. If H5P_CRT_ORDER_TRACKED is present on the group property list then the display is made by creation order, otherwise it is made by name 2) Added a new file to h5dumpgentest that generates a file with a hierarchy of groups with creation order on and off in alternately Note : XML code was not modified Tested : windows, linux
* [svn-r14160] Description:Quincey Koziol2007-09-275-15/+15
| | | | | | | | | | | | | | | | Make H5Topen versioned, and add regression test for H5Topen1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14158] Description:Quincey Koziol2007-09-273-219/+418
| | | | | | | | | | | | | | | | Add regression test for h5repack with userblock Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14156] Description:Quincey Koziol2007-09-265-67/+65
| | | | | | | | | | | | | | | | Add API versioning to H5Tcommit() Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14155] Copy user block when repack a file by defualt.Peter Cao2007-09-251-3/+86
| | | | (need to add more options as stated in bug 173)
* [svn-r14154] Description:Quincey Koziol2007-09-2511-233/+223
| | | | | | | | | | | | | | | | | | | | Finish deprecating last H5G symbol (H5G_obj_t) - yay! Lots of misc. library fixes to remove confusion between links and objects. The tools could still use another pass, to remove h5trav_type_t type and make the correct distinction between links & objects. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14148] Description:Quincey Koziol2007-09-141-62/+32
| | | | | | | | | | | | | | | | Add H5Rget_obj_type() to the API versioning and switch internal routines to use H5Rget_obj_type2() Misc. other code cleanups, etc. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14147] Description:Quincey Koziol2007-09-131-4/+0
| | | | | | | | Clean up some "WANT_H5_V1_4_COMPAT" #ifdefs that somehow survived this far... Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14144] Description:Quincey Koziol2007-09-1333-4606/+4193
| | | | | | | | | | | | | | | | Move H5Gget_objinfo() to deprecated symbols section and retarget internal usage to H5Lget_info()/H5Oget_info(). Misc. other code cleanups... Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14137] Description:Quincey Koziol2007-09-071-1/+1
| | | | | | | | Correct name used for checking objects to operate on for h5repack, exposed by recent traversal routine changes. Tested on: Solaris/32 5.10 (linew) w/szip
* [svn-r14136] Description:Quincey Koziol2007-09-0614-1083/+1055
| | | | | | | | | | | | | | Move H5Gget_num_objs() and several minor macros, etc. to deprecated symbols section, replacing it with H5Gget_info(). Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14132] Description:Quincey Koziol2007-08-303-256/+219
| | | | | | | | | | Regenerate the h5diff_types.h5 file, which had somehow gotten mangled in some earlier checkin (prior to ~2-3 days ago, at least). Clean up formatting a bit also.. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14131] Description:Quincey Koziol2007-08-3010-134/+128
| | | | | | | | | | | | | | Move H5Giterate() and H5G_iterate_t to deprecated symbols section, replacing them with H5Literate and H5L_iterate_t respectively. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14129] Description:Quincey Koziol2007-08-303-72/+74
| | | | | | | | | | | | | | | | Add H5O{set|get}_comment routines, which were overlooked before. Move H5G{set|get}_comment routines to deprecated code section, replacing internal calls with H5O{set|get}_comment. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) AIX/32 5.3 (copper) Mac OS X/32 10.4.10 (amazon)
* [svn-r14127] Description:Quincey Koziol2007-08-292-91/+86
| | | | | | | | | | | | | Move H5Gget_linkval to deprecated symbol section and replace with H5Lget_val for internal calls. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14126] Description:Quincey Koziol2007-08-293-293/+290
| | | | | | | | | | | | | Move H5Gunlink to deprecated symbol section, replacing internal calls with H5Ldelete. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14120] Description:Quincey Koziol2007-08-281-2/+2
| | | | | | | | | | | | Move H5Glink2 to deprecated routines section. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14117] Description:Quincey Koziol2007-08-285-150/+148
| | | | | | | | | | Move H5Glink() into "deprecated routines" section, replacing internal usage with H5Lcreate_hard/H5Lcreate_soft. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Solaris/32 5.10 (linew)
* [svn-r14116] Description:Quincey Koziol2007-08-281-7/+9
| | | | | | | | Fix error in end_obj() macro to make it safer in situations without enclosing braces. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14115] Description:Quincey Koziol2007-08-2817-1298/+1205
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14114] Purpose: Fix a subtle Windows bug in h5unjamScott Wegner2007-08-271-1/+1
| | | | | | | | | Description: In h5unjam.c, there was a call to "open", rather than "HDopen". This isn't a problem on most platforms, as the are equivalent. However, on Windows, we use the HDopen macro to unconditionally set the O_BINARY flag. This is needed to safely seek within a file. Tested: VS2005 on WinXP h5committest (kagiso linew smirom)
* [svn-r14104] Description:Quincey Koziol2007-08-238-669/+643
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14097] Description:Quincey Koziol2007-08-211-1/+1
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14071] Pedro Vicente Nunes2007-08-101-1/+1
| | | | | | typo fix in usage message tested: linux
* [svn-r14069] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14068] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14051] Pedro Vicente Nunes2007-08-072-6/+2
| | | | | | Make the compare to itself file test be another due to the recently introduced file with Nans Tested: linux, solaris
* [svn-r14048] Pedro Vicente Nunes2007-08-074-160/+221
| | | | | | Added a dataset with NaN values to the h5diff file generator program and new binary file Tested: linux
* [svn-r14044] Pedro Vicente Nunes2007-08-071-1/+1
| | | | | | updated the usage message to say the STR option is implemented tested: windows, linux
* [svn-r14039] Pedro Vicente Nunes2007-08-076-3/+209
| | | | | | | | | | | | | New feature: implementation of h5import conversion of an ASCII plain-text file containing text data The string type H5T_C_S1 is used to define the data (the datum is defined here as one line of text in the text file). The size is set to variable length (H5T_VARIABLE) The space used is a 1D array with as many elements as there are lines in the ASCII file (a line is defined by the inclusion of an end of line character, ASCII number 10). A first traversal of the input text file must be made to determine the number of lines in the file and thus the dimensionality of the dataset. New test to the test script added text input files and teststr.h5 for h5dump to compare added Tested: windows, linux, solaris
* [svn-r14023] Purpose:Vailin Choi2007-07-2722-37/+961
| | | | | | | | | | reorganization. Description: move the h5stat tool into its own directory. Platform tested: kagiso.
* [svn-r14001] Pedro Vicente Nunes2007-07-231-1/+1
| | | | | | fixed comments tested: linux
* [svn-r14000] Pedro Vicente Nunes2007-07-231-2/+2
| | | | | | | bug fixes: help message had incorrections, typos tested: linux
* [svn-r13999] Pedro Vicente Nunes2007-07-231-279/+279
| | | | | | | purpose: bug 791 redirect help output to stdout rather to stderr tested: windows, linux
* [svn-r13998] Pedro Vicente Nunes2007-07-231-3/+3
| | | | | | typo fixes in error messages tested: linux
* [svn-r13984] Description:Quincey Koziol2007-07-176-527/+423
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13980] Cast num_objs, num_attrs and dims to "size_t" due to the ↵Vailin Choi2007-07-141-4/+11
| | | | | | -Mbounds problem of the pgi-32 bit on indexing.
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