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* [svn-r16629] removed a h5dump test (array type) that has a different bogus ↵Pedro Vicente Nunes2009-03-305-25/+13
| | | | | | | | | output in frebsd (liberty) removed the call to the file generation in the test generation program removed the binary h5 and ddl from svn tested: linux
* [svn-r16620] commented a run that fails cross platforms (liberty, abe) ↵Pedro Vicente Nunes2009-03-261-1/+1
| | | | regarding a "double" print
* [svn-r16614] 3. #1501 (B1) tools bug if dataset is larger than ↵Pedro Vicente Nunes2009-03-2515-21/+188
| | | | | | | | | | | | H5TOOLS_BUFSIZE limit. ISSUE : the tools use the following formula to read by hyperslabs: hyperslab_size[i] = MIN( dim_size[i], H5TOOLS_BUFSIZE / datum_size) where H5TOOLS_BUFSIZE is a constant defined of 1024K. This is OK as long as the datum_size does not exceed 1024K, otherwise we have a hyperslab size of 0 (since 1024K/(greater than 1024K) = 0). This affects h5dump. h5repack, h5diff SOLUTION: add a check for a 0 size and define as 1 if so. TEST FOR H5DUMP: Defined a case in the h5dump test generator program of such a type (an array type of doubles with a large array dimension, that was the case the user reported). Since the written file commited in svn would be around 1024K, opted for not writing the data (the part of the code where the hyperslab is defined is executed, since h5dump always reads the files). Defined a macro WRITE_ARRAY to enable such writing if needed. Added a run on the h5dump shell script. Added 2 new files to svn: tools/testfiles/tarray8.ddl, tools/testfiles/tarray8.h5. NOTE: while doing this I thought of adding this dataset case to an existing file, but that would add the large array output to those files (the ddls). The issue is that the file list is increasing. TEST FOR H5DIFF: for h5diff the check for reading by hyperslabs is H5TOOLS_MALLOCSIZE (128 * H5TOOLS_BUFSIZE) or 128 Mb. This makes it not possible to add such a file to svn, so used the same method as h5dump (only write the dataset if WRITE_ARRAY is defined). As opposed to h5dump, the hyperslab code is NOT executed when the dataset is empty (dataset is not read). Added the new dataset to existing files and shell run (tools/h5diff/testfiles/h5diff_dset1.h5 and tools/h5diff/testfiles/h5diff_dset2.h5 and output in tools/h5diff/testfiles/h5diff_80.txt). TEST FOR H5REPACK: similar issue as h5diff with the difference that the hyperslab code is run. Added a run to the shell script (with a filter, otherwise the code uses H5Ocopy). tested: linux (h5commitest failed , apparently it did not detect the code changes in /tools/lib that fix the bug: the error in an assertion in the hyperslab of 0. I am sure that making h5ccomitest --distclean will detect the new code , but don't want to wait more 3 hours :-) )
* [svn-r16584] added the OUTPUT-ARCHITECTURE STD that was previously removed Pedro Vicente Nunes2009-03-161-0/+1
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* [svn-r16571] corrected the date on the release.txt entry and a comment on ↵Pedro Vicente Nunes2009-03-111-1/+1
| | | | the script
* [svn-r16569] the conf file needs a byte order entry because of the way the ↵Pedro Vicente Nunes2009-03-111-0/+1
| | | | | | | | tool validates the output with h5dump (comparing the h5dump current output with a h5dump output from a pre-existent h5 file). added the byte order keyword that was removed on the last check in tested: linux, solaris
* [svn-r16568] #1462 By selecting a compression type, a big endian byte order ↵Pedro Vicente Nunes2009-03-113-5/+5
| | | | | | | | | | | | | | | | was being selected. When reading the compression parameter keyword, the compression type read flag was incorrectly set to read, removed this line of code in->configOptionVector[COMPRESS] = 1; Modified one configuration file to have the COMPRESSION-TYPE GZIP Keyword. Entered a bug description fix of - h5import: By selecting a compression type, a big endian byte order was being selected (PVN - 2009/11/3) tested: linux
* [svn-r16563] removed commnented code Pedro Vicente Nunes2009-03-101-13/+0
| | | | tested: linux
* [svn-r16561] Purpose:Mike McGreevy2009-03-1011-33/+33
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to specify the installation location of C header files, did not work correctly as the path was hard-coded in config/commence.am. I'm presuming this is because an older version of automake didn't know where to put c header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag to allow customization of this value. Tested: jam, liberty
* [svn-r16560] Description:Quincey Koziol2009-03-108-46/+41
| | | | | | | | | | Remove another call to H5E_clear_stack() from within the library. Clean up lots of compiler warnings. Tested on: Mac OS X/32 10.5.6 (amazon) (followup on other platforms forthcoming)
* [svn-r16518] have 2 expected outputs for 2 h5ls runs depending if run on a ↵Pedro Vicente Nunes2009-02-2617-6/+67
| | | | | | | big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: h5committest
* [svn-r16502] bug fix: a comma accidently left on a conditional typedef was ↵Pedro Vicente Nunes2009-02-201-4/+13
| | | | | | causing compilition error on AIX tested: h5commitest
* [svn-r16501] remove a strange character from a commentPedro Vicente Nunes2009-02-201-2/+2
| | | | tested: h5committest
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-1811-106/+106
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r16461] Bug fix: for compound types, the not comparable test for ↵Pedro Vicente Nunes2009-02-1110-9/+173
| | | | | | | | | | | | | | | | | | | | members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: windows, h5committest
* [svn-r16449] bug fix: compare the return value of H5Tequal with TRUEPedro Vicente Nunes2009-02-061-2/+2
| | | | tested: h5committest
* [svn-r16434] bug fix: typo in usage messagePedro Vicente Nunes2009-02-0515-15/+15
| | | | tested: linux
* [svn-r16401] Description:Quincey Koziol2009-02-032-0/+5
| | | | | | | | | Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16377] Revert unintentional change to tfamily00000.h5Neil Fortner2009-01-291-0/+0
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* [svn-r16376] Purpose: Fix a bug encountered when copying shared messagesNeil Fortner2009-01-291-0/+0
| | | | | | | | | | | | | Description: When attempting to copy an object with a message shared in its own object header, the library attempts to protect the same object header twice. Previously, it was possible for the object header to be protected with write access in one or both of these protects, which would be illegal. The library should now always protect with read only access in this case. The conditions for fixing incorrect datatype versions have been made weaker to support this change. The version will only be corrected if the object header the datatype is in is modified. Tested: jam, smirom (h5committest)
* [svn-r16373] replaced some printf statements with parallel_printPedro Vicente Nunes2009-01-294-35/+34
| | | | tested: linux serial and parallel
* [svn-r16358] bug fixPedro Vicente Nunes2009-01-274-3/+6
| | | | | | a new line was not inserted at the end of output, causing diff to complain between linux and frebsd tested: linux , freebsd
* [svn-r16354] Description:Quincey Koziol2009-01-273-3/+3
| | | | | | | | | | | Bring r16353 back from revise_chunks branch: Refactor internal layout information, making it easier to add another type of chunk index. Tested on: FreeBSD/32 6.3 (duty) (other platforms tested with original patch)
* [svn-r16352] bug fix: some printf calls instead of parallel_print made some ↵Pedro Vicente Nunes2009-01-271-35/+35
| | | | | | tests to fail tested: linux parallel
* [svn-r16348] #1368 (E1) h5diff: implement "not comparable" messages. ↵Pedro Vicente Nunes2009-01-2640-126/+203
| | | | | | | | Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16340] Description:Frank Baker2009-01-222-2/+2
| | | | | | Changed 'THG' to 'The HDF Group' in various HDF5 source files, most of which are <subdirectory>/COPYING. -- Closes Bugzilla entry 1403.
* [svn-r16333] Bug 948 followup.Albert Cheng2009-01-201-2/+2
| | | | | | | Moved a comment up to a more appropriate spot. No execution change. Tested: jam pp.
* [svn-r16328] Bug 948.Albert Cheng2009-01-181-3/+9
| | | | | The test "h5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5" sometimes hangs in THG machines. Skip it until its hanging is resolved.
* [svn-r16319] add conditinal nan detection to some missing placesPedro Vicente Nunes2009-01-141-32/+68
| | | | tested: windows, linux
* [svn-r16301] Add a mention to the usage that the default minimum size for ↵Pedro Vicente Nunes2009-01-131-1/+1
| | | | | | | | | | compression is 1024 bytes M - is an integer greater than 1, size of dataset in bytes (default is 1024) #bgz 1426 tested: windows, linux
* [svn-r16300] Added an option to avoid dealing with NaNs Pedro Vicente Nunes2009-01-1317-96/+136
| | | | | | | -N, --nan Avoid NaNs detection Note: there is no shell script run for datasets with NaN because the output is non portable (different results and NaN strings for different systems) Tested: windows, linux
* [svn-r16299] Print a message ofPedro Vicente Nunes2009-01-134-7/+71
| | | | | | | | | Storage: information not available When displaying storage information for VL and dataset region types Added 2 shell runs that display this information #818 Tested: windows, linux
* [svn-r16217] Bug fixPedro Vicente Nunes2008-12-236-2016/+2106
| | | | | | | PG compiler complains about array out of bounds (a rank of zero was not checked) Adding a scalar dataset to the test generator program. this case is run on a previous existing run, the case was added to 2 existing files Tested: windows, linux
* [svn-r16182] Description:Quincey Koziol2008-12-111-2/+2
| | | | | | | | | | | | | | | | | | | | | | Rename internal routines, variables, macros, typedefs, etc. for chunked dataset storage from "istore" to some variant of "chunk" or "btree". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r16114] remove commented codePedro Vicente Nunes2008-11-211-13/+0
| | | | tested: windows, linux
* [svn-r16112] #1375. Define a default chunk whose size is manageable. Defined ↵Pedro Vicente Nunes2008-11-213-13/+55
| | | | | | currently as the same size of hyperslab (that compares the dimension sizes against a predefined constant size and chooses the minimum between the two) Tested : linux, windows
* [svn-r16030] updated some comments regarding a function change regarding ↵Pedro Vicente Nunes2008-11-041-9/+6
| | | | | | | | | | h5diff return value (not done for 1.8) * Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008 * Compare the graph and make h5diff return 1 for difference if * 1) the number of objects in file1 is not the same as in file2 * 2) the graph does not match, i.e same names (absolute path) * 3) objects with the same name are not of the same type
* [svn-r16024] For scalar string datasets print the character position when a ↵Pedro Vicente Nunes2008-11-044-602/+745
| | | | | | difference is found instead of a non-existing array position Tested: windows
* [svn-r16012] Bug fixPedro Vicente Nunes2008-10-311-5/+9
| | | | | | | When -b was requested and no -o (file name) binary output was made to stdout Had a check after command line parsing to verify if -o is present, otherwise exit Tested: windows, linux
* [svn-r15993] Pedro Vicente Nunes2008-10-291-186/+45
| | | | | | Merge with 1.8 rev 15985 reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code Tested: linux
* [svn-r15992] Merge with 1.8 rev 15973Pedro Vicente Nunes2008-10-291-1/+4
| | | | | make -b accept both MEMORY and NATIVE Tested: linux
* [svn-r15991] Merge with 1.8 rev 15969Pedro Vicente Nunes2008-10-294-53/+92
| | | | | | | | | | | | | | | Introduced a new feature in the tools library regarding command line parsing In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory) Used for the h5dump binary option -b It can be now 1) -b (defaults to NATIVE) 2) - b NATIVE 3) - b FILE 4) -b LE 5) -b BE Note: the keyword NATIVE replaces MEMORY This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files Tested: linux
* [svn-r15990] Merge with 1.8 rev 15967Pedro Vicente Nunes2008-10-291-4/+18
| | | | | | regarding the return value of h5diff (0, no difference in files, 1 difference ) objects with the same name must be of the same type tested: linux
* [svn-r15989] Merge with 1.8 up to rev 15945Pedro Vicente Nunes2008-10-293-74/+11
| | | | | | Regarding use of unsigned long long print format Tested: linux
* [svn-r15988] Merge with 1.8 up to rev 15871Pedro Vicente Nunes2008-10-294-22/+94
| | | | | | Regarding h5diff, h5copy Tested: linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-2921-125/+53
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15979] some test files from rev 15866 from 1.8 branch Pedro Vicente Nunes2008-10-283-0/+2
| | | | tested: linux
* [svn-r15977] merge rev 15866 from 1.8 branch into trunk (diffs for unsigned ↵Pedro Vicente Nunes2008-10-285-456/+889
| | | | | | long long) tested: windows, linux
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-2412-68/+71
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15886] Purpose: Close bug 1332Neil Fortner2008-10-1621-107/+530
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
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