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Documentation
Description:
Accommodate v1.2.x behavior when --enable-hdf5v1_2 is enabled.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Bug fix (by Bob McGrath)
Description:
On Solaris platforms palette was not written to the HDF5 file
Solution:
'\0' character was written outside the GroupName array. Apparently on Solaris it destroyed the condition value that determined if the palette should be written to the file.
Platforms tested:
Not tested yet.
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Purpose:
Checking in BOb's Changes
Description:
Just checking in Bob McGrath's changes to the h5dumper's XML code.
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Purpose:
Bug fix
Description:
One of the function calls (H5Sget_simple_extent_dims) used parameter with
the wrong type. That caused compilation errors on T3E.
Solution:
Used NULL since that argument is optional and was never used.
Platforms tested:
T3E(mcurie) and IRIX64 (modi4)
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code warrior support
and some clean up
the macros file_seek and file_offset_t that were repeated over sevral files were put only in
H5private.h
H5private .h was updated for win32
vthe
Description:
Solution:
Platforms tested:
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Clean up compiler warnings.
Description:
Just code neatening mostly, some casts, etc.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
New features for adding attribute options and modifying testing files
Description:
Solution:
Platforms tested:
eirene,arabica
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Purpose:
new features
Description:
1. add an option to convert HDF4 file without HDF4 specified attributes such as
HDF4_OBJECT_TYPE, HDF4_REF_NUM etc.
it can be done by inputting "h4toh5 -na input.hdf"
The default converter will still keep HDF4 specfied attributes.
2. Add compression features (gzip) for image too. Now the compressed HDF4 image
can be supported by using HDF5 gzip. Not sure whether tools can read it. Need to be tested.
3. Change SPACEPAD to NULLTERM for HDF4 dimensional name list. We can use variable length HDF5 string to represent these names, however currently H5dump and H5view cannot support variable length HDF5 string. converter will wait for other tools' update.
Solution:
Platforms tested:
eirene(Red Hat 6.2) and arabica(solaris 2.7)
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Purpose:
update h4toh5 converter utility test files
Description:
better output of HDF4 dimensional name list
Solution:
Platforms tested:
eirene,arabica
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Purpose:
update h4toh5 testing files
Description:
Now we are using fixed size for HDF5 dimensional name list and h5dump
output is appended with 000/000/.......................
It looks ugly and annoying.
Solution:
Use NULLTERM for SDS dimensional list names
Platforms tested:
RedHat 6.2(eirene) and solaris 2.7(arabica)
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Code cleanups
Description:
Fixed a small number of compiler warnings.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Code cleanups
Description:
Fixed a small number of warnings.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Fooling around
Description:
Added deleted gif.h file
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Purpose:
Bug fix
Description:
Rushabh added new directory tools/gifconv to CVS. He also modified
MANIFEST, but bin/chkmanifest complains this file.
Solution:
I will try to delete gif.h and then to add it once more.
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Purpose:
Adding new feature
Description:
Added gif2h5 and h52gif conversion utilities
Solution:
The utilites follow the framework built for the gif2hdf and hdf2gif
utilities for hdf4. The main files modified were those that read the
H5 file and those that write H5 file. In the future, if you wish to
continue with the framework and extend it to .png or some other fileformat
the main files to edit will be the gif reader and writer.
One point to note with h52gif. You have to specify the exact location of
the image and the palette that it links to. You can choose not to specify
a palette (uniform grayscale chosen in this case) but you must specify
image location. In the future, someone could edit the readhdf.c source
to enable the reader to parse the hdf file and select all images with
corresponding palettes.
Platforms tested:
modi4 , eirene , hawkwind , arabica , Ren (NT 4.0) , Personal box (win2k)
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Purpose:
Add definations of two new functions
Description:
Solution:
Platforms tested:
eirene
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Purpose:
Add a constant(compression level for gzip)
Description:
For compression issue
Solution:
Platforms tested:
eirene
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Purpose:
a bug fix
Description:
User can define "Real Vdata" as user-defined attribute. By using VSisattr, we can check this out. In order to keep this piece of information, We use "Vdata attribute" in the converted HDF5 file to distingush this kind of Vdata from independent Vdata.
Solution:
see above
Platforms tested:
eirene(Linux)
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Purpose:
a bug fix
Description:
When Vsisattr is true, this Vdata still needs to be converted as an independent
real "Vdata", We will add object type of this vdata as "Vdata attribute".
Solution:
erease the evaluation of Vsisattr call.
Platforms tested:
Linux(eirene)
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Purpose:
bug fix Adding more features
Description:
Bugs: 1) hdf4 dimensional scale data can be none, but the dim name can still defined by users, so number of hdf4 dimensional names and number of object reference may be different
Previously, this problem is not considered.
2) SDcheckempty will return true when fill value is set to HDF4 SDS, and then fill value information is lost
3) check whether SDS have fill value set although SDcheckempty return true.
Use H5Psetfillvalue and H5Dcreate in HDF5 part, still needs to wait for the new development of HDF5 and also need to investigate whether this part of code has bugs.
New features: compressed SDS will get compressed with gzip when it is converted. That will save some space.
[describe the bug, or describe the new feature, etc]
Solution:
See above and design document
Platforms tested:
eirene(linux)
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Adding Tests
Description:
Added tests for the h5dump subsetting feature.
Platforms tested:
Linux
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Oops
Description:
An "if" was capilalized for some reason.
Solution:
Changed it from If to if.
Platforms tested:
Linux
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small bug fix
Description:
If specifying --stride, it was checking for the wrong short-form of
the command-line parameters.
Solution:
Changed the 'T' to 'S' which is the new short form for the stride
option.
Platforms tested:
Linux
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Update
Description:
If the count for a subset isn't specified, then we default to the
remainder of the dataset.
Solution:
Check for the count to be specified. If not, then find the dimensions
of the dataset and subtract from the the "start" parameter.
Platforms tested:
Linux
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Update
Description:
Updated the way the subsetting data is retrieved. It now does it one
row of blocks at a time. It may still run out of memory, but this is
at least a good first step.
Also, the start parameter defaults to (0, 0, ...) if it isn't
specified.
Platforms tested:
Linux
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Update
Description:
Changed old style includes "with <>" to new style 'with ""' for
dependencies gathering.
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Update
Description:
Replaced
#include <hdf5_file.h>
with
#include "hdf5_file.h"
so that gcc can pick up our files more easily without picking up
system header files (which we don't care about being in the
dependencies list).
Platforms tested:
Linux
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Update
Description:
Replaced "#include <hdf5_file.h>" with the equivalent, but better
#include "hdf5_file.h" so that gcc can pick up our header files more
easily.
Platforms tested:
Linux
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Purpose:
a bug fix
Description:
when creating sds dimensional scale dataset, I accidently created two sds dimensional scale dataset with the same name, (say using name "dim1" for both rank 2 and rank 3).
hdf4 library doesn't give me complaints, hdp dumpsds doesn't generate complaints. h4toh5 converter since assumed that dimensional scale name has to be unique, simply skip if finding the same dimensional name, so accidently the result from hdp dumpsds are the same as the result from h5dump until I implement library API and find this bug.
Solution:
make unique sds dimensional scale name for this test file. Will also need to modify testfiles later.
suggestions: somebody check hdf4 library to disallow the same dimensional scale nameOused for the same sds object.
Platforms tested:
eirene, and this check in will not affect daily test.
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Update
Description:
Applied fix to h5dumper which was applied to the 1.4 branch. Done
just before creating subdirectories in the 1.4 branch.
Platforms tested:
Linux
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Updated
Description:
Updated test results for the h5dumper's XML option. The tool now
conforms with the fixes implemented in the 1.4 branch.
Platforms tested:
Linux
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Feature Add
Description:
This is the first (alpha) version of h5tools which does subsetting
according to the subsetting document. There's still some niceties
which need to be worked out, but this is the ground work.
Platforms tested:
Linux
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Bug Fix.
Description:
Kent is correct about the malloc error. It's harmless if it's not
needed anyway.
Solution:
Removed the #ifdef's since all platforms should use this.
Platforms tested:
Linux
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Purpose:
fixing the format of dumper output for windows test
Description:
New dumptest includes the feature that an error of the output will be put into stderr in linux
On windows, that stderr will not be redirected into the output file and the comparsion between the expected file and the dumper output is not correct.
Solution:
change fprintf(stderr .....) at h5tool_util.c into fprintf(stdout ......) so that it fits the comparison.
Platforms tested:
windows 2000
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Purpose:
a bug fix on windows(possible on other platforms)
Description:
not allocating enough space for a string at dump_all for debug version
a string tmp is defined at dump_all(....),
The memory that is allocated to tmp is malloc(strlen(prefix)+strlen(name)+1);
However, there is one testing case : strlen(prefix) is 0 and
tmp is allocated in the following:
strcat(tmp,"/");
strcat(tmp,name);
....
free(tmp);
the program fails when freeing tmp for debug (dll) version on windows 2000
Solution:
For windows platform:
allocate memory strlen(prefix)+strlen(name)+2
Platforms tested:
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Purpose:
avoid a windows bug for string handling
Description:
Solution:
Platforms tested:
windows 2000, linux
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Purpose:
change macro RGB into HDF5_RGB since RGB is defined on windows platforms
Description:
Solution:
Platforms tested:
eirene
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Purpose:
a bug fix
Description:
uninitialize the start and edge value for test_ras8 and test_ras24 functions
Solution:
initialize
Platforms tested:
eirene,arabica
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Update
Description:
Due to code motion, some functions which were being called were moved
to another module. Included only that header file.
Platforms tested:
Linux
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Update
Description:
Updated to reflect the new naming of APIs in the h5tools library.
I.e., things which were once named "h5dump_*" now have the "h5tools_"
prefix instead.
Platforms tested:
Linux
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Code Cleanup
Description:
Moved some code out which wasn't specific to the h5tools into the
h5tools_utils and h5tools_str modules. Also started on adding the
subsetting feature to the dumping.
Platforms tested:
Linux
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Code Movement
Description:
Moved some functions which worked only with the h5tools_str_t
structure from the h5tools module to the h5tools_str module.
Platforms tested:
Linux
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New Modules
Description:
Separated the "generic" functions out of the h5tools module into
their own separate module to make things a bit nicer to deal with.
Platforms tested:
Linux
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Update
Description:
Added entry for h5tools_utils.*
Platforms tested:
Linux
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Update
Description:
Changed name of h5tools functions.
Solution:
Changed
h5dump_fixtype() -> h5tools_fixtype()
Platforms tested:
Linux
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Bug Fix
Description:
We weren't doing cleans or installs in the lib/ subdirectory.
Solution:
Added lib to the for loops.
Platforms tested:
LInux
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Bug Fix
Description:
For some reason, it was trying to cd to the examples/ and pablo/
directories to do a distclean. Only problem was, they aren't here.
Solution:
Removed those from the `for' loop.
Platforms tested:
Linux
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More Subsetting
Description:
Wanted to do a check-in of the current subsetting stuff. The
command-line parsing was already in there. I now added the feature to
the h5dump_t structure and it now outputs the new SUBSET DDL stuff in
the correct format. It doesn't yet do the actual subsetting, but
we're getting there...
Platforms tested:
Linux
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Resubmit of Changes
Description:
Previous changes to the h5dumper were lost. This patch includes
better memory management of XML formatted strings along with the bug
fixes for the XML code.
Solution:
Merged the XML patch with the previous code.
Platforms tested:
Linux
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Bug Fix
Description:
assert.h was included twice now that H5private is in there.
Solution:
remvoed one.
Platforms tested:
Linux
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