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* Hdf5 merge pr 509 v18 (#541)Larry Knox2021-04-052-56/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Removes c99_(v)snprintf() calls from the standalone test code (#509) * Committing clang-format changes * Removes c99_(v)snprintf from standalone code These internal API calls were removed in a previous commit but were missed in the sio/pio_standalone code. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merges from develop (#432)Allen Byrne2021-03-0552-226/+438
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop
* 1 8 Merges from develop (#418)Allen Byrne2021-03-032-5/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-2284-5754/+5336
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* Update version to 1.8.23-0 after creating release branch for 1.8.22.Larry Knox2020-12-171-7/+7
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* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-04155-155/+155
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-2014-65/+65
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Change '==' to 'eq' in test scriptAllen Byrne2020-10-051-1/+1
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* HDFFV-11096 Correct h5dump usage textAllen Byrne2020-10-0510-23/+23
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* Source formattedAllen Byrne2020-10-0193-30257/+30273
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* Merge clang-format changes from developAllen Byrne2020-10-0112-19/+334
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* The version string has a second use for packagingAllen Byrne2020-08-261-1/+1
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* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-2213-13/+26
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* Fix ifort warning flag.Larry Knox2020-05-0413-0/+39
| | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-3013-0/+26
| | | | libhdf5.settings.in to remove unworkable changes.
* TRILAB-192 - merge changes from developAllen Byrne2020-04-073-6/+5
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2020-04-062-16/+46
|\ | | | | | | | | * commit '9da5bbcc9bae79f91788e72bace53ed2323e887f': H5repack bug fixes from develop
| * H5repack bug fixes from developJordan Henderson2020-04-052-16/+46
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* | Autotools reconfigure updateAllen Byrne2020-03-3113-13/+39
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* | TRILAB-192 merging warnings changes from developAllen Byrne2020-03-318-0/+28
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* Correct conditions for parallel builds with and without tests.Larry Knox2020-03-202-3/+3
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* Fixes for test failures with --disable-tests --disable-tools options.Larry Knox2020-03-192-1/+6
| | | | Don't test ph5diff if tests are disabled.
* Add missing includeAllen Byrne2020-03-181-0/+4
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* Remove double entryAllen Byrne2020-03-151-2/+0
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* Remove unneeded filesAllen Byrne2020-03-112-52/+0
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* Fix commentAllen Byrne2020-03-101-1/+1
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* h5dump reg ref chnages has no error fileAllen Byrne2020-03-093-33/+6
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* Check sizeof type to use correct ref_typeAllen Byrne2020-03-093-78/+65
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* Correct grep text for filter testAllen Byrne2020-03-061-3/+3
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* Revert incorrect bool typeAllen Byrne2020-03-052-4/+4
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* Fix CMake compare commandsAllen Byrne2020-03-052-38/+76
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* Correct test script for errstackAllen Byrne2020-03-041-7/+80
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* Fix h5ls attrregAllen Byrne2020-03-013-11/+46
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* Fix gif tool and h5dumpAllen Byrne2020-03-017-85/+328
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* Merge changes from other branchesAllen Byrne2020-02-2986-6185/+5780
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* HDFFV-11012, sanitize, warnings and tools idsAllen Byrne2020-02-1128-719/+638
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* HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-02-061-1/+7
| | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly.
* Merfge changes to CMake test options and add sanitizersAllen Byrne2020-01-2015-202/+223
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* Bring perform tools changes from developAllen Byrne2020-01-177-83/+92
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* Remove attributeAllen Byrne2020-01-121-1/+1
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* Fix CMake test macros and perform standalone testsAllen Byrne2020-01-1210-64/+205
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2020-01-1210-28/+28
|\ | | | | | | | | | | | | | | * commit 'd92575889bc5a509ba2ac428c2086855edd26b32': fix merge error Merge pull request #2244 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop Merge pull request #2234 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
| * Merge pull request #2244 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-101-2/+2
| | | | | | | | | | | | | | to develop * commit '6b1b4b3c0bdd803835efe8c531965bb9900a5363': fix test assert fail error
| * Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-1010-28/+28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
* | Standalone needs MPI libsAllen Byrne2019-12-221-2/+2
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* | Include should be the lib folderAllen Byrne2019-12-221-2/+2
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* | Standalone still requires timer functionsAllen Byrne2019-12-221-2/+4
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* | Standalone does not use tools or test librariesAllen Byrne2019-12-211-4/+4
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* Standalone doesn't use h5test implementation.Allen Byrne2019-12-201-2/+3
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* Remove duplicate instanceAllen Byrne2019-12-161-4/+0
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