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* Merge #2198 CMake MPI link (#2217)Allen Byrne2022-11-083-6/+6
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* Run bin/reconfigure to propagate fortran mod change to configure and (#1952)Larry Knox2022-07-2913-0/+13
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* clang 13 format #1933 (#1941)Allen Byrne2022-07-2866-514/+512
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* 1.8 Move error-stack text to top of usage display #1564 (#1569)Allen Byrne2022-04-1428-80/+134
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* 1.8 Merge doxygen changes from develop (#1545)Allen Byrne2022-03-315-9/+9
| | | | | | | * Merge doxygen changes from develop * revert macro code change * Format correction
* SZ plugin changes from develop #1456 (#1527)Allen Byrne2022-03-272-8/+8
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* 1 8 Remove const from the argv tools/tests main sig. #1390 (#1406)Allen Byrne2022-01-2923-65/+66
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* Add missing files for enabling doxygen and run bin/reconfigure. (#1246)Larry Knox2021-12-0213-26/+637
| | | | | | * Add missing files for enabling doxygen and run bin/reconfigure. * Make default to build high-level tools the same as default for high-level library.
* Merge #1237 Add check for SDK version on windows (#1240)Allen Byrne2021-12-011-1/+1
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* Merge multiple PRs to 1.8 (#1230)Allen Byrne2021-11-254-34/+37
| | | | | Merge Fix Fortran REGEX and newlines #1226 Merge Github #969 Use stdout instead of file for configure check #1089 Merge Consolidate VFD create list macro #1132
* 1.8 Merge cmake and flag changes from develop (#1119)Allen Byrne2021-10-223-30/+5
| | | | | | | * Merge cmake and flag changes from develop * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1.8 Merge Remove clang warnings from develop (#1099)Allen Byrne2021-10-196-127/+126
| | | | | * Merge Remove clang warnings from develop * revert HD prefix
* 1.8 Merge Fix ASAN issue in h5dump error path #1051 (#1061)Allen Byrne2021-10-082-3/+1
| | | | | * Merge Fix ASAN issue in h5dump error path #1051 * Merge Rework error allocation free.
* 1.8 Merge HDFFV-11266 - add option to build HL tools #1018 (#1022)Allen Byrne2021-09-1713-0/+13
| | | | | | | * Merge HDFFV-11266 - add option to build HL tools #1018 * Update configure and Makefile.ins with bin/reconfigure. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* 1 8 update copyright headers (#1004)Larry Knox2021-09-164-19/+20
| | | | | | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files (#993) * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Commit changes to Makefile.ins and 4 src/H5E*.h files from running bin/reconfigure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 Fix tools test (#797)Allen Byrne2021-06-247-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Enable fortran for gcc action * Refactor Fortran CMake config tests and CMake test args * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 CMake changes from develop (#739)Allen Byrne2021-06-083-15/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Enable fortran for gcc action * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 8 merges from develop and format specifier updates (#670)Allen Byrne2021-05-2510-175/+166
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision * Add "option" command for clang options * CMake merges from develop h5cc scripts * Updates from develop and printf formatters * Committing clang-format changes * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 18 copying update (#565)Larry Knox2021-04-222-26/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update top-level COPYING file and remove COPYING files from subdirectories. * Update top-level COPYING file and remove COPYING files from subdirectories (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Remove non-existant file from MANIFEST. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merge dev changes for long double and cmake (#548)Allen Byrne2021-04-2042-462/+2162
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop * Split format source and commit changes on repo push * Change windows TS to use older VS. * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update unsupported types with precision Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 merge pr 509 v18 (#541)Larry Knox2021-04-052-56/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Removes c99_(v)snprintf() calls from the standalone test code (#509) * Committing clang-format changes * Removes c99_(v)snprintf from standalone code These internal API calls were removed in a previous commit but were missed in the sio/pio_standalone code. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 8 Merges from develop (#432)Allen Byrne2021-03-0552-226/+438
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop
* 1 8 Merges from develop (#418)Allen Byrne2021-03-032-5/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-2284-5754/+5336
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* Update version to 1.8.23-0 after creating release branch for 1.8.22.Larry Knox2020-12-171-7/+7
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* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-04155-155/+155
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-2014-65/+65
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Change '==' to 'eq' in test scriptAllen Byrne2020-10-051-1/+1
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* HDFFV-11096 Correct h5dump usage textAllen Byrne2020-10-0510-23/+23
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* Source formattedAllen Byrne2020-10-0193-30257/+30273
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* Merge clang-format changes from developAllen Byrne2020-10-0112-19/+334
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* The version string has a second use for packagingAllen Byrne2020-08-261-1/+1
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* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-2213-13/+26
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* Fix ifort warning flag.Larry Knox2020-05-0413-0/+39
| | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-3013-0/+26
| | | | libhdf5.settings.in to remove unworkable changes.
* TRILAB-192 - merge changes from developAllen Byrne2020-04-073-6/+5
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2020-04-062-16/+46
|\ | | | | | | | | * commit '9da5bbcc9bae79f91788e72bace53ed2323e887f': H5repack bug fixes from develop
| * H5repack bug fixes from developJordan Henderson2020-04-052-16/+46
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* | Autotools reconfigure updateAllen Byrne2020-03-3113-13/+39
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* | TRILAB-192 merging warnings changes from developAllen Byrne2020-03-318-0/+28
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* Correct conditions for parallel builds with and without tests.Larry Knox2020-03-202-3/+3
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* Fixes for test failures with --disable-tests --disable-tools options.Larry Knox2020-03-192-1/+6
| | | | Don't test ph5diff if tests are disabled.
* Add missing includeAllen Byrne2020-03-181-0/+4
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* Remove double entryAllen Byrne2020-03-151-2/+0
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* Remove unneeded filesAllen Byrne2020-03-112-52/+0
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* Fix commentAllen Byrne2020-03-101-1/+1
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* h5dump reg ref chnages has no error fileAllen Byrne2020-03-093-33/+6
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* Check sizeof type to use correct ref_typeAllen Byrne2020-03-093-78/+65
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* Correct grep text for filter testAllen Byrne2020-03-061-3/+3
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* Revert incorrect bool typeAllen Byrne2020-03-052-4/+4
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