| Commit message (Collapse) | Author | Age | Files | Lines |
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Description: Multiple copies of Copyright appeared in Makefile.in. This was
due to automake copying the copyright right in the included files such as
config/commence.am.
Solution: Automake treats double hashes as comments and does not copy them
to Makefile.in. Changed all the copyright notices in config/*.am to use
double hashes for the Copyright right notice.
Tested: kagiso via bin/reconfigure.
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Dependency line
in the Makefile.
Makefile change only. Tested on kagiso, to be used to test on cobalt.
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output
attributes in another order
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Test:
Just visual inspection as these are all comments changes.
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Mask off the storage utilization for the h5ls output, so that the
h5ls output is more portable (VL datatype size is reported as the memory size
instead of the file size, making the storage utilization incorrect - entered
in bugzilla)
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up indentation.
Tested on:
Linux/32 2.6 (chicago)
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Blank out the modification time, to eliminate another portability issue.
Tested on:
Linux/32 2.6 (chicago)
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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Use the '-S' command line flag for h5ls, to make the output portable.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add '-p' flag to h5copy tool, to create intermediate "parent" groups
that don't exist in destination file yet.
Add more tests to h5copy script.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Put paths to testfile input & output directories in one place, making it
easier to modify them if we choose to re-arrange our testfile locations in
the future (this should probably be carried over to other test scripts).
Make h5copy exit more cleanly if no command line parameters are given.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command
line, allowing the group structure for a file to be created in a script. This
tool closely follows the 'mkdir' command line tool in UNIX/Linux.
Allow tool library applications to pass a FAPL to the h5tool_fopen() call,
giving some additional flexibility to tools which are adding objects to an
existing HDF5 file (like h5copy & h5mkgrp).
Fix missing files in MANIFEST from previous checkin(s).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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temporary fix for a daily test failure
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Add empty & "full" groups to source HDF5 file and test copying them.
Test renaming objects during copy
Test specifying root group path for source & destination objects
Tested on:
Linux/32 2.6 (chicago)
Too minor to require more tests
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Refactor h5copy testing script to abstract out some of the common behavior,
obey the "HDF5_NOCLEANUP" environment variable, delete any output file left
over from a previous run, add a "test variation" parameter to output file name
for adding next sequence of test variations, etc.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add feature to h5copy to allow it to add an object to an existing file,
instead of blowing away existing file.
Modify h5tools_fopen() routine to take access flags, so it can be used
to open an existing file for writing.
Added check to h5copy test script that verifies it has produced a file
with the correct structure.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Fix core dump for iterating over attributes and not passing in a "starting
point".
Update output files missed in previous checkin. This change essentially
reverses a previous change of attribute ordering, leaving the output of h5dump
& h5ls compatible with 1.6.x
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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replaced a dataset type from H5T_NATIVE_CHAR to H5T_NATIVE_SCHAR
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remove a test that was incorrectly added previously, that was not the feature that had to be tested
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added a test for the printing of long long numbers greater than 4GB
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2 tests that were previously incorporated inside the array indices test file were separated from it. These are a test with a dataset with dimensions greater tan 4GB and a test to read by hyperslabs
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Ran reconfigure to generate the Makefile.in files.
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Tested: visual inspection as they are all just comments.
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Add support for inserting attributes into creation order index.
Also, update support for dense link & attribute storage in h5debug.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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It seems that while Cygwin supports the time command, it has trouble with
the syntax
srcdir="../../hdf5/test" time ./testhdf5
and complains.
The solution is to test the above case in configure and not to use the time
command if it fails; Cygwin is fine with
srcdir="../../hdf5/test" ./testhdf5
Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility
problem since every platform but Cygwin is already fine with the current
syntax.
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replaced the path to XML schema from NCSA page to hdfgroup.org
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Tests run on juniper, kagiso, smirom. h5debug run manually on sample files on
Windows, juniper, and kagiso.
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The problem
came from the EOA for the whole MULTI file. It's taken out because it's
meaningless for MULTI file. Instead, each individual file has its EOA.
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New version of the function h5tools_dump_simple_subset, to display subsetting. The new algorithm is:
Introduced an outer loop for cases where dimensionality is greater
than 2D. In each iteration a 2D block is displayed by rows in a inner
loop. The remainning slower dimensions above the first 2 are incremented
one at a time in the outer loop
Note: when blocks are introduced, the display is not correct. This is a bug that requires an improvement of the algorithm.
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modified the format for the printing of reference information for a string, related to the same change in h5dump to display the name of the referenced dataset
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Fixed #720 h5dump: improve how region references are displayed. h5dump now uses the new API function H5Rget_name to display the name of the dataset referenced instead of its ID. Added a case to the script test file
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one more fix related to bug 551. the printing of the subsetting parameters was not using the new hsize_t printing format
correct output is now
[pvn@kagiso ad]$ /home1/pvn/build_hdf5/tools/h5dump/h5dump -d /a -s "0,8899716890" -c "1,10" jasp_char.h5
HDF5 "jasp_char.h5" {
DATASET "/a" {
DATATYPE H5T_STD_I8LE
DATASPACE SIMPLE { ( 20, 8899716900 ) / ( 20, 8899716900 ) }
SUBSET {
START ( 0, 8899716890 );
STRIDE ( 1, 1 );
COUNT ( 1, 10 );
BLOCK ( 1, 1 );
DATA {
(0,8899716890): 1,
(0,8899716891): 1,
(0,8899716892): 2,
(0,8899716893): 2,
(0,8899716894): 3,
(0,8899716895): 3,
(0,8899716896): 4,
(0,8899716897): 4,
(0,8899716898): 5,
(0,8899716899): 5
}
}
}
}
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fix for bugzilla bug #551
several programming errors contributed to this bug
1) the parsing of subsetting was using atoi to convert the parameter to an int,
which caused problems for numbers greater that int. Substitute with atof
2) several index counters were declared as int, use hsize_t instead
3) the numerical format passed for printf was %lu, defined one compatible with
hsize_t instead (unsigned long long)
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Fix display order of attributes.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Fix several bugs
1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof
2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm
Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by
Position of I(z,y,x) = index_z * size_y * size_x
+ index_y * size_x
+ index_x
And pass that position to the function that dumps data, h5tools_dump_simple_data.
3) several index counters were declared as int, use hsize_t instead
4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
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added a size of array information when printing differences
modified print_pos and diff_datum for having one extra argument *dims
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Take out separate memory type in the file for SOHM objects and create
aliases for existing memory types for SOHM use.
Tested on:
FreeBSD/32 4.11 (sleipnir)
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avoid usage to call exit(1), it makes processes to stop in parallel.
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introduced a new macro PDIFF to calculate differences for unsigned types
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introduced more ABS macro use
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warnings clean
../../../hdf5/tools/h5repack/h5repack_opttable.c:240: warning: passing arg 2 of `aux_tblinsert_layout' as signed due to prototype
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warnings clean
../../../hdf5/tools/h5repack/h5repack_copy.c:615: warning: passing arg 3 of `print_dataset_info' as `float' rather than `double' due to prototype
introduced double precision arithmetic
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fixed warning
../../../hdf5/tools/h5diff/h5diff_common.c: In function `usage':
../../../hdf5/tools/h5diff/h5diff_common.c:346: warning: function might be possible candidate for attribute `noreturn'
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fix some memory allocation problem with info->prefix
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compiler warning clean
../../../hdf5/tools/lib/h5tools_ref.c:257: warning: old-style parameter declaration
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fixed 2 initializations of char* with HDstrdup and HDcalloc
info->prefix = HDcalloc(1, 1);
fname = HDstrdup(argv[opt_ind]);
some were exposed by compiler warnings
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