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* [svn-r11967] Purpose:Quincey Koziol2006-02-271-32/+40
| | | | | | | | | | | | | | | New feature Description: Check in initial "fractal heap" code, for supporting the group redesign. Also, remove some remnants of the segmented heap/block tracker/B+tree code which I didn't find during the last pass. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4
* [svn-r11965] Purpose:Quincey Koziol2006-02-241-49/+0
| | | | | | | | | | | | Maintenance Description: Remove half-built (half-baked? :-) implementation of B+tree, block tracker and segmented heaps. (In preparation for starting the new heap coding) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping)
* [svn-r11958] Purpose:James Laird2006-02-201-2/+0
| | | | | | | | | | | | | | | Change to release script Description: Silenced doxygen's output when bin/release doc is run. Now if doxygen has an error the release script will exit. Someone forgot to run reconfigure after a Makefile.am, so testing the release script seems to have had the side effect of regenerating a Makefile.in. Platforms tested: mir
* [svn-r11932] Purpose:Pedro Vicente Nunes2006-02-102-12/+48
| | | | | | | | | | | | | | | bug fix Description: the --disable-hl switch was causing linking errors on gif2h5 that uses image api (bugzilla #1) Solution: used the condional macro for hl to build gif2h5 Platforms tested: linux Misc. update:
* [svn-r11931] Purpose:Pedro Vicente Nunes2006-02-092-4/+4
| | | | | | | | | | | | | | | | bug fix Description: the linking order in Makefile.am of the gif2h5 tool was causing linking errors on some configurations (pgcc, --disable-shared) Solution: changed the order of the linking (hl before hdf5) Platforms tested: linux, several configurations solaris Misc. update:
* [svn-r11919] Purpose:Pedro Vicente Nunes2006-02-061-5/+0
| | | | | | | | | | | | | some code cleaning Description: Solution: Platforms tested: none Misc. update:
* [svn-r11918] Purpose:Pedro Vicente Nunes2006-02-063-328/+41
| | | | | | | | | | | | | | | | bug fix , bugzilla bug #1 Description: the gif2h5 was not writing HDF5 images correctly Solution: use the Image API to write the image, rewrote the writing functionY Platforms tested: linux solaris Misc. update:
* [svn-r11889] Purpose:Quincey Koziol2006-01-241-0/+1
| | | | | | | | | | Bug fix Description: Fix compile problem with C++ compiler after recent changes. Platforms tested: FreeBSD 4.11 (sleipnir) w/CC=g++
* [svn-r11886] Purpose:Quincey Koziol2006-01-2335-1212/+1135
| | | | | | | | | | | | | Code cleanup Description: Check in some of the code cleanups from working on the external link support. (This doesn't include any of the external link features) Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX.4 (amazon) Linux 2.4
* [svn-r11879] Purpose:Pedro Vicente Nunes2006-01-111-229/+232
| | | | | | | | | | | | | | | | | | | | bug fix a call to sprintf was giving incorrect output in the system Fedora Core 4 with gcc 4.0 (not supported by us, but user reported) Solution: the call was using the same buffer for source and destination variables, used different ones Platforms tested: linux (mir) solaris (sol) Misc. update:
* [svn-r11799] James Laird2005-12-162-4/+4
| | | | | | | | | | | | | | | Purpose: Bug fix Description: Libraries were listed in the wrong order in tools/gifconv Makefile.am, confusing the linker. Solution: Put HDF5 library after tools library in Makefile.am and ran reconfigure. Platforms tested: mir, sleipnir
* [svn-r11796] Purpose:Pedro Vicente Nunes2005-12-151-17/+60
| | | | | | | | | | | | | | | | | | | | h52gif bug fix (494) Description: the reading routines were using file datatype sizes for memory allocation Changed the HDF5 read routines to use memory types and sizes, for both the image and pallete datasets Solution: Platforms tested: linux solaris Misc. update:
* [svn-r11792] Purpose:James Laird2005-12-132-2/+4
| | | | | | | | | | | | | | Makefile fix Description: The h5diff parallel test script depends on the serial test script. Added this dependency. Solution: Used SCRIPT_DEPEND variable. Also added ph5diff (when it is compiled). Platforms tested: mir
* [svn-r11790] Purpose:Albert Cheng2005-12-131-12/+42
| | | | | | | | | | | | | | | | Improvement Description: Some parallel system would dump some system messages in the stdout stream of an MPI application. That caused the output matching script to fail unnecessarily. Solution: Added the STDOUT_FILTER feature to filter out those system messages out of stdout result. Platforms tested: Tested in LANL Lambda.
* [svn-r11787] Purpose:Quincey Koziol2005-12-121-4/+0
| | | | | | | | | | | | Bug fix Description: Remove several macros that are already defined in H5private.h and are causing failures on copper. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11781] Purpose:Quincey Koziol2005-12-101-0/+1
| | | | | | | | | | | Bug fix Description: Include more header files with prototypes to make CC=g++ builds work. Platforms tested: FreeBSD 4.11 (sleipnir) w/CC=g++ Too minor to require h5committest
* [svn-r11771] Purpose:Quincey Koziol2005-12-081-10/+10
| | | | | | | | | | | | Code cleanup Description: Fix a bunch of warnings flagged by Windows compilers. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11741] Purpose:James Laird2005-11-1810-60/+160
| | | | | | | | | | | | | | | | | Bug fix Description: Fortran type generation was broken in two ways. Fixed both. Solution: Firstly, there were a couple of path problems. Fixed a typo and specified the full path of a file. Secondly, the dependencies weren't right when building with HDF5-specific commands (make lib, make check-s, etc.). Tweaked dependencies to fix the problem. Platforms tested: mir, modi4, sleipnir
* [svn-r11738] Purpose:James Laird2005-11-1810-0/+40
| | | | | | | | | | | | | | | | | | | Configure feature Description: Added 'make trace' target. Solution: Added tracing to 1.7. This was done automatically in 1.6, but left out of 1.7 until now (oops!). Tracing in 1.7 only happens manually, when the user types 'make trace.' Tracing automatically requires more framework than it's worth. I also fixed a couple of tracing bugs and ran trace. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11737] Purpose:James Laird2005-11-1710-0/+80
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Before this checkin, 'gmake check-s' would fail if there was a file in the current directory named 'check-s'. This is fixed under gmake (not sure how to fix for other makes). Solution: check, progs, install, etc. are what gmake calls "phony" targets, which means that no file should be created. These targets can be specified by a line of the form .PHONY: check progs install ... Automake adds this line for targets it knows about, but HDF5 has a lot of custom rules. This checkin adds a .PHONY line for those rules. I believe that only gmake recognizes the .PHONY line (at least, pmake doesn't seem to), but a partial solution is better than none. This error should occur very rarely anyway (the user has to manually create files with names like 'build-check-s' or '_test'). Platforms tested: mir, sleipnir, modi4
* [svn-r11736] Purpose:Albert Cheng2005-11-161-4/+0
| | | | | | | | | | | | | | Cleanup. Description: Removed reference to H5_HAVE_VSNPRINTF and the corresponding abort since we do not use the home-grown potentially memory wacking version any more. Platforms tested: heping. Misc. update:
* [svn-r11730] Purpose:Quincey Koziol2005-11-161-58/+60
| | | | | | | | | | | | | | | | | Bug fix Description: Correct use of H5Gget_objinfo() which recent compact group checkins exposed: we were attempting to follow dangling soft links. Solution: Don't follow links for H5Gget_objinfo() when initializing object tables for h5dump. Platforms tested: Solaris 2.8 w/64-bit enabled Linux 2.4 FreeBSD 4.11 (sleipnir)
* [svn-r11712] Purpose:Quincey Koziol2005-11-153-6/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11668] Purpose:James Laird2005-11-012-16/+17
| | | | | | | | | | | | | | Copyright fix Description: Added a blank line so that Automake would put the copyright at the top of the file. Platforms tested: Trivial change Misc. update:
* [svn-r11646] Purpose:James Laird2005-10-3110-40/+140
| | | | | | | | | | | | | | | | | | Bug fix/feature Description: Added support for -shlib in h5fc and h5c++. Made check-install use -shlib when only shared libraries have been installed. Solution: h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against shared libraries. When static libraries are disabled, the examples Makefiles will automatically use the -shlib option to link against shared libraries. Thus, --disable-static and make check-install should work together. Platforms tested: heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
* [svn-r11619] Purpose:Quincey Koziol2005-10-292-0/+28
| | | | | | | | | | | Update copyrights. Description: Solution: This should address almost all of the "simple" cases in the repository. There's still work to do, but it's going to require actually thinking about the files in question instead of just copying & pasting.
* [svn-r11612] Purpose:James Laird2005-10-2710-10/+10
| | | | | | | | | | | | | Bug fix Description: Failed parallel tests now cause make to exit with an error. Solution: Edited config/conclude.am to throw an error if parallel test programs fail. Platforms tested: heping, modi4
* [svn-r11607] Purpose:Pedro Vicente Nunes2005-10-262-3/+10
| | | | | | | | | | | | | | | | | new h5diff test Description: added a test to the test h5diff script that compares a file to itself. this test is done to test some features of the library that open the same file and the root group twice Solution: Platforms tested: linux solaris Misc. update:
* [svn-r11602] Purpose:James Laird2005-10-2411-55/+7
| | | | | | | | | | | | Bug fix Description: Removed detection of pdb from configure.in as a corollary to removal of pdb2hdf5 tool. Platforms tested: mir, modi4
* [svn-r11601] Purpose:James Laird2005-10-242-679/+0
| | | | | | | | | | | | | | | | | Added additional targets to build-all Description: Surveyed files to find out which ones are not built. Added test/space_overflow and perform/benchpar to programs built with --enable-build-all. Discovered that tools/misc/pdb2hdf5 and tools/misc/h5import were obsolete and deleted them. Platforms tested: mir, modi4, sol Misc. update: Update of release file and removal of --enable-pdb2hdf5 to follow.
* [svn-r11584] Purpose:Pedro Vicente Nunes2005-10-192-6/+14
| | | | | | | | | | | | | | | | | | | | | | | | bug fix Description: an assertion after the search for objects was saying that the number of objects in file should be > 0 removed it, since there can be a case where the number of objects is 0. in this case this was found by a case where zlib was not present and the output file was not written any objects to note: this was only detected on the windows batch files, that do not have a conditional condition to not run tests when a filter is not present Solution: Platforms tested: linux Misc. update:
* [svn-r11577] Purpose: Maintenance/small VMS bug fixElena Pourmal2005-10-181-13/+13
| | | | | | | | | | | | Description: VMS doesn't like file names with more than one "." Some h5repacktst output file names were of the form <name>.out.h5 causing h5repacktst to choke. Solution: Renamed output files to be of the form <name>out.h5 Platforms tested: heping, unnamed VMS machine Misc. update:
* [svn-r11573] Purpose:James Laird2005-10-1710-0/+10
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Changed configure.in to use an environment variable TR to set the path to the tr utility. Solution: There are two kind of tr on Solaris with slightly different syntax. HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers have needed to make sure that the "right" tr was found before the wrong one in their path; now they can use an environment variable. Platforms tested: mir, shanti, sol Misc. update: Forgot to update release notes. Off to do that now.
* [svn-r11566] Purpose:James Laird2005-10-1410-0/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | Makefile bug fix Description: Previously, automake didn't output rules to build perform/mpi-perf or the test/gen_* programs. Now these can be built by typing 'make mpi-perf' (or 'make foo') or by configuring with --enable-build-all. Solution: Automake doesn't like having rules for programs it doesn't build. Tricked it by having these programs built "sometimes"--whenever the user enables --build-all. This should be used mostly for testing and to ensure that these helper programs compile. ***IMPORTANT*** These programs do *not* currently compile. When --enable-build-all is used (not the default), gen_new_fill fails because it uses an old API. This is an existing "bug" that has simply been exposed by this checkin. Platforms tested: sleipnir, modi4, sol Misc. update:
* [svn-r11539] Purpose:Albert Cheng2005-10-111-0/+14
| | | | | | | Added Copyright notice. Platforms tested: Tested in heping.
* [svn-r11500] Bug fix.Albert Cheng2005-10-051-1/+6
| | | | | | | | | SETUP Was using "cp" command which means file $2 will inherit the permission setting of file $1. If $1 is read-only, so will $2. That will cause failure when the test attempts to write it later on. Changed to use the "cat" command. Tested in LANL QSC and Flash.
* [svn-r11478] Purpose:Albert Cheng2005-09-2910-80/+70
| | | | | | | | | | | | | | | | bug fix. Description: When a parallel test script test fails, make would continue because the way it was setup inside a for loop. Fixed it by issuing an exit 1 inside the loop. There was also a typo error in the newer command comparision that it must be $${chkname} in order to be valid. Also, the test script itself was not checked in the newer lists. All fixed. Platforms tested: h5committested and also hand tested in heping pp mode.
* [svn-r11446] Purpose:James Laird2005-09-2010-20/+30
| | | | | | | | | | | Bug fix Description: Massaged the newer script and config/conclude.am to make SX6 happy. Platforms tested: SX6, sol, mir
* [svn-r11445] Purpose:Pedro Vicente Nunes2005-09-207-0/+14
| | | | | | | | | | | | | | | | | | | | | | | | | h5diff new feature Description: a user asked for the message "Some objects are not comparable" to be more noticeable Solution: -------------------------------- Some objects are not comparable -------------------------------- Platforms tested: linux Misc. update:
* [svn-r11443] Purpose:Pedro Vicente Nunes2005-09-196-61/+132
| | | | | | | | | | | | | | | | | | | | | | new features Description: added support for the scale/offset filter there is a new filter symbol 'SOFF' -f SOFF=<scale_factor,scale_type> scale_factor = integer scale_type = 'IN' or 'DS' Solution: Platforms tested: Linux SunOS Misc. update:
* [svn-r11431] Purpose:Albert Cheng2005-09-1810-20/+30
| | | | | | | | | | | | | | | | | New feature. Description: Added the time command to the make check target to report time usage of the execute of each test and test scripts. This gives us some idea how long each test takes and some vague idea it is compute bound or not. powerpc-ibm-aix5.x: Change $RUNPARALLEL default setting to allow it being invoked by the time command. Platforms tested: h5committested.
* [svn-r11425] Purpose:Quincey Koziol2005-09-173-6/+653
| | | | | | | | | | | Add new tool Description: Add 'h5stat' tool to repo. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11421] Purpose:James Laird2005-09-1610-40/+110
| | | | | | | | | | | | | | | Feature Description: Added H5_CFLAGS, etc. to 1.7 branch. Now compilation flags can be put in H5_*FLAGS and they'll be used when building hdf5 but not in h5cc. Platforms tested: mir, sleipnir, modi4 Misc. update:
* [svn-r11420] Purpose:James Laird2005-09-1610-0/+20
| | | | | | | | | | | | | | | | | Bug fix Description: Disabled C++ shared libraries for Sun Workshop compiler. Solution: This bug only seems to happen when using the -xarch=v9 flag to compile in 64-bit mode, but disabling shared libraries entirely for this compiler is an easier fix (I don't know how to detect 64 bit mode from the command line). The framework for disabling shared libraries for other C++ compilers is in place. Platforms tested: sol, mir, sleipnir, modi4
* [svn-r11418] Purpose:James Laird2005-09-1510-0/+20
| | | | | | | | | | | | | | | | Bug fix/feature Description: Disabled shared libraries for a number of Fortran compilers that don't support them. This allows other compilers to support shared Fortran libraries. Solution: Added a conditional, SHARED_FORTRAN_CONDITIONAL, which is true if Fortran supports shared libraries. It is set in configure.in. Platforms tested: mir, sleipnir, colonelk, heping
* [svn-r11411] Purpose:James Laird2005-09-132-14/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Building with --disable-static seems to have been broken on several platforms. Fixed this. Configure will now disable shared libraries automatically when using pgf90 or when building on Cygwin. Solution: To avoid errors when using shared libraries with pgf90 (which I had not realized were compiler-specific), I had manually set convenience libraries to use the -static linking flag. Apparently, this is not necessary, and caused these libraries to be created as empty archives when --disable-static was used. Also, some libraries were including other libraries, which was not necessary. I also fixed code in configure.in to correctly detect whether shared or static libraries are enabled, and moved code that disables shared libraries to before libtool is created (rather than editing libtool after the fact). Despite repeated warnings that only one shared library can be linked at a time, I have yet to have shared libraries break the linking of tests on any system. We'll see if the Daily Tests turn up anything. Platforms tested: mir (fortran, C++), sleipnir (C++), modi4 (fortran, C++, parallel), sol (fortran, C++), cygwin
* [svn-r11404] Purpose: MaintenanceElena Pourmal2005-09-132-1/+2
| | | | | | | | | | Description: Brought back changes from SX-6. Solution: Program will not compile. Fixed. Platforms tested: SX-6, heping and mir with new g95 Misc. update:
* [svn-r11388] Purpose:Pedro Vicente Nunes2005-09-122-9/+13
| | | | | | | | | | | | | | | bug fix Description: during the generation of some test files, H5Fclose was not called during the #ifdef detection of the scale ofsset filter, a wrong macro symbol was used Solution: Platforms tested: linux Misc. update:
* [svn-r11337] Purpose:Quincey Koziol2005-09-013-3/+3
| | | | | | | | | | | | Code cleanup Description: Changed some scale+offset filter symbols from H5_SO_... -> H5Z_SO_... to indicate that they are in the H5Z package. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11329] Purpose:MuQun Yang2005-08-311-1/+1
| | | | | | | | | | | | code changes due to the change of scaleoffset API. Description: Solution: Platforms tested: Misc. update:
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