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* [svn-r27196] Move pbbits file to subfolderAllen Byrne2015-06-1255-137/+137
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* [svn-r27185] fix more instances where both mpi is_initialized and ↵Mohamad Chaarawi2015-06-101-7/+7
| | | | | | is_finalized need to be checked before making any MPI calls. tested with h5committest.
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-0115-59/+59
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r27111] move undef of __attribute__ back to private and remove its ↵Mohamad Chaarawi2015-05-261-3/+3
| | | | usage from public routines.
* [svn-r27071] Description:Quincey Koziol2015-05-151-3/+3
| | | | | | | | Clean up H5B2 interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux 2.6.* (jam) w/serial & parallel
* [svn-r27058] Description:Quincey Koziol2015-05-131-6/+33
| | | | | | | | | | Convert internal chunk structures to use 'scaled' coordinates instead of absolute coordinates. Tested on: Mac OSX/64 10.10.3 (amazon) w/parallel & serial Linux 2.6.x/32 (jam) w/parallel & serial Linux 2.6.x/64 (koala) w/serial
* [svn-r26953] Remove src temporary debug build props.Allen Byrne2015-04-281-2/+2
| | | | Move TOOLS option up before usage.
* [svn-r26936] Incorrect use of HSIZE_T_FORMAT macro, needed to be sub macro ↵Allen Byrne2015-04-271-3/+3
| | | | | | H5_PRINTF_LL_WIDTH. Tested: local linux
* [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-077-25757/+11
| | | | | | | | | compound type. Added the testing to h5repack where it belongs. Undo the tests added to h5dump. Tested: h5committested plus tested in jam by hand.
* [svn-r26721] Disable failing testAllen Byrne2015-04-031-1/+1
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* [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-0212-12/+0
| | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
* [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-011-3/+16
| | | | | | | | | | | | | compound type. Description: The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ... Solution: Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now. Tested: h5committest, emu by hand for both development and production modes. But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
* [svn-r26699] Generators are only built staticAllen Byrne2015-04-016-13/+13
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* [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal}Allen Byrne2015-04-012-94/+22
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* [svn-r26683] Remove internal filter checksAllen Byrne2015-03-312-33/+17
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* [svn-r26682] Add new test from test scriptAllen Byrne2015-03-311-0/+3
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* [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own ↵Albert Cheng2015-03-314-0/+25756
| | | | | | | | | | | | | | | | examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
* [svn-r26670] Remove VPATH and LONE_COLONLarry Knox2015-03-312-19/+1
| | | | Tested with h5committest
* [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-3012-24/+0
| | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
* [svn-r26649] squish warnings.Mohamad Chaarawi2015-03-302-38/+34
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* [svn-r26635] Description:Quincey Koziol2015-03-282-23/+2
| | | | | | | | | | | Bring r26651 from autotools_rework branch to trunk: Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI & HP compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26594] Merge macros and fortran changes from dual_binary feature.Allen Byrne2015-03-2511-43/+43
| | | | Tested: local linux
* [svn-r26509] Run reconfigure after merges from autotools_rework branch.Jerome Soumagne2015-03-2012-24/+0
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* [svn-r26505] Merge r26435 from autotools_rework branch.Jerome Soumagne2015-03-201-1/+1
| | | | | | | Remove DEFAULT_LIBS from configure.ac and irix6.x config file which was using it. Remove references to IRIX/irix* platform.
* [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were inDana Robinson2015-03-112-2/+2
| | | | | | format strings. Tested on: h5committest
* [svn-r26408] Missed an H5_HAVE_FILTER_SHUFFLE line.Dana Robinson2015-03-091-1/+1
| | | | | | Part of: HDFFV-9086 Tested on: jam (minor change)
* [svn-r26387] warning fixes from Feb27.Mohamad Chaarawi2015-03-061-4/+12
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* [svn-r26380] Recapture updated error files for h5dump testsAllen Byrne2015-03-063-105/+21
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* [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-0110-155/+161
| | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
* [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-2720-294/+33
| | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* [svn-r26305] convert dump_dcpl to use switch statementAllen Byrne2015-02-251-241/+189
| | | | | | Add default case refactor out start ctx and end ctx Tested: local linux
* [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-2512-25/+25
| | | | make clean.
* [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-231-3/+0
| | | | functions to work with v16 default API.
* [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-231-1/+0
| | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
* [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-221-0/+3
| | | | Tested on: jam w/ parallel and fortran
* [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-201-3/+0
| | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
* [svn-r26223] add another H5close before finalize so with-mpe does not fail.Mohamad Chaarawi2015-02-181-1/+4
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* [svn-r26208] Update cmake minimumsAllen Byrne2015-02-1812-12/+12
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* [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-1612-12/+24
| | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-1612-12/+0
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls.Allen Byrne2015-01-261-1/+1
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* [svn-r25955] Added Perform and io_timer back into build.Allen Byrne2015-01-052-2/+2
| | | | Tested: local linux cmake
* [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-052-7/+13
| | | | | | | | | | | | | Last changes had caused problems with Windows platform: 1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools. Need to move it to io_timer.c. 2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler does not like it. Screened it out for now. 3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as "H5TOOLS_DLL". 4. STANDALONE mode is broken. Screened out the code for now. Tested; h5committest.
* [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform ↵Allen Byrne2015-01-052-2/+2
| | | | sub-folder due to SHARED compile issues and other issues.
* [svn-r25946] Removed debug statments that use //.Albert Cheng2015-01-043-12/+0
| | | | Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
* [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-018-16/+11
| | | | | | | | | | | | | | | | | | | | | | Move timing measurement routines used by h5perf and h5perf_serial to tools/lib so that they can be used by other tools too. tools/lib/io_timer.c tools/lib/io_timer.h tools/perform/io_timer.c tools/perform/io_timer.h renamed perform/io_timer.[ch] to lib/io_timer.[ch] tools/lib/Makefile.am tools/lib/Makefile.in tools/lib/CMakeLists.txt tools/perform/Makefile.in tools/perform/Makefile.am tools/perform/CMakeLists.txt MANIFEST updated due to the move. Tested; h5committest and jam (serial)
* [svn-r25938] Remove build and test commands for deleted benchpar.cAllen Byrne2014-12-312-16/+0
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* [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, ↵Albert Cheng2014-12-3014-573/+375
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | stage 1. tools/perform/sio_timer.h: tools/perform/pio_timer.c: tools/perform/io_timer.h: tools/perform/io_timer.c: Renamed pio_timer.[ch] as io_timer.[ch]; merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial call the combined io_timer.[ch]. Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. Screened out set_timer_type() and get_timer_type() which were not used by any code. tools/perform/Makefile.am: tools/perform/Makefile.in: tools/perform/CMakeLists.txt Adjusted to use io_timer.c for both h5perf and h5perf_serial. tools/perform/pio_perf.c: tools/perform/sio_perf.c: tools/perform/pio_perf.h: tools/perform/sio_perf.h: Renamed [sp]io_time_destory() to same io_time_destroy(); Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. tools/perform/pio_engine.c: tools/perform/sio_engine.c: Removed #include io_timer.h since it was already #include by [sp]io_perf.h. MANIFEST: Updated the merge of [sp]io_timer.[ch] into io_timer.[ch]. Tested: h5committest and jam in extra.
* [svn-r25918] If not testing skip building test only programs.Allen Byrne2014-12-221-10/+12
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* [svn-r25909] HDFFV-8156: perform/benchpar failed to runAlbert Cheng2014-12-191-488/+0
| | | | | | | Benchpar.c is retired/deleted. If it is ever needed, it can be retrieved from the SVN repository or even previous version of HDF5 source code. Tested: jam parallel make passed.
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