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* [svn-r15557] bug fix: the -m flag add a long description of "--threshold" ↵Pedro Vicente Nunes2008-08-291-1/+1
| | | | | | that was changed to "--minimum" because "--threshold" now refers to the threshold parameter for H5Pset_alignment tested: linux
* [svn-r15556] Check options for H5Pset_alignment.Pedro Vicente Nunes2008-08-291-9/+2
| | | | | | threshold is zero default (a valid value) but zero is not a valid alignment tested: windows, linux
* [svn-r15551] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-287-23/+192
| | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15547] fix typosPedro Vicente Nunes2008-08-272-2/+2
| | | | tested: linux
* [svn-r15527] turn off a debug print flagPedro Vicente Nunes2008-08-251-1/+1
| | | | tested: windows, linux
* [svn-r15526] userblock optionsPedro Vicente Nunes2008-08-253-8/+9
| | | | | | only write the user block of a pre-existing file with user block in case there is no input user block file tested: windows, linux
* [svn-r15521] #1184Pedro Vicente Nunes2008-08-226-16/+310
| | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15509] bug fixPedro Vicente Nunes2008-08-211-270/+282
| | | | | | when comparing attributes, a type ID was not properly closed solution: close the Id on the iteration and continue instead of goto out of the cycle
* [svn-r15462] Description:Quincey Koziol2008-08-122-1/+2
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15458] Purpose: Modify the library to take the proper action when ↵inactive/jpeg_converterNeil Fortner2008-08-1158-3/+14
| | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-072-4/+16
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15445] added some commentsPedro Vicente Nunes2008-08-072-1/+15
| | | | tested: windows, linux
* [svn-r15439] Add the following patch Peter Cao2008-08-061-1/+1
| | | | | | | | | | | | | | | | === The following patch to h5copy.c on or near line 173 makes the tool substantially more useful... *flag = (*flag) | fla; Because the command-line option parsing permits multiple '-f' arguments, this will have the effect of or'ing the flags together so one can do someting like.... ~/tmp/hdf5-1.8.1/tools/h5copy/h5copy -i multi_ucd3d.h5 -s block5 -o gorfo -d foo -f shallow -f soft Mark C. Miller, Lawrence Livermore National Laboratory email: mailto:miller86@llnl.gov ===
* [svn-r15438] Purpose: Bring the Windows H5pubconf.h up-to-dateScott Wegner2008-08-061-1/+1
| | | | | | | | | | | | | | Description: This commit is a major update to the Windows-maintained H5pubconf.h file. This file is statically-distributed because Windows cannot generate it dynamically as other platforms do. Previously, our Windows version contained a minimal subset of the macro definitions required. To update, I've gone through each macro (based on kagiso's output), and tested for the correct value on Windows. This allows us to better target code based on feature flags. It should also be easier to update in the future as changes are made to the configure script. This commit also contains one small bug fix in h5ls.c. Some Windows-specific code was missing a local variable definition. The bug went unnoticed because Windows didn't define the feature flag correctly. I've also made changes to the h5vers script. Whenever the version string is incremented (automatically by h5test after a snapshot), the strings in H5pubconf.h will also be updated. Tested: VS2005 on WinXP (32- and 64-bit) VS.NET on WinXP 32-bit h5vers tested under Cygwin
* [svn-r15432] bug fixPedro Vicente Nunes2008-08-051-6/+8
| | | | | | the compression ratio was being printed for cases where a layout was requested and not a filter tested: windows, linux
* [svn-r15431] added the h5diff "contents" mode to the h5diff calls in the ↵Pedro Vicente Nunes2008-08-051-0/+3
| | | | | | h5repack test tested: windows, linux
* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-0421-116/+361
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r15421] bug fixPedro Vicente Nunes2008-07-281-5/+5
| | | | | | | the parsing of the command line strings for the shared object header message type was not being done correctly (strcmp) fix: substituted by strncmp tested: windows, linux
* [svn-r15337] Unintended change to h5dump.c. Reverted.Neil Fortner2008-07-081-12/+8
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* [svn-r15335] Fixed incorrect error message in H5Pset_fletcher32:Neil Fortner2008-07-081-8/+12
| | | | | | | | "unable to add deflate filter to pipeline" -> "unable to add fletcher32 filter to pipeline" Tested: kagiso
* [svn-r15320] Update the test files for h5stat.Vailin Choi2008-07-034-10/+10
| | | | h5committested.
* [svn-r15315] remove h5jam filesPedro Vicente Nunes2008-07-034-4/+0
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* [svn-r15314] moved h5jam test files to tools/h5jam/testfilesPedro Vicente Nunes2008-07-038-3/+6
| | | | tested: linux
* [svn-r15292] moved h52jpeg to /hl/tools/h52jpegPedro Vicente Nunes2008-06-288-223514/+0
| | | | tested: linux
* [svn-r15291] Implementation of generating more use cases (datasets of ↵Pedro Vicente Nunes2008-06-273-24/+220
| | | | | | | | several types) for the test generator program and file Implementation of transforming 2D datasets with integer and float classes to 8bit acceptable by the jpeg library. tested: windows, linux
* [svn-r15280] code cleaning (for some reason svn has been duplicating blocks ↵Pedro Vicente Nunes2008-06-251-29/+0
| | | | of code)
* [svn-r15279] more code cleaningPedro Vicente Nunes2008-06-251-0/+15
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* [svn-r15278] code cleaning and commentsPedro Vicente Nunes2008-06-251-5/+19
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* [svn-r15277] added code for reading an image type from the command line Pedro Vicente Nunes2008-06-252-6/+35
| | | | | | added a new test run for the shell script with image name specified tested: windows, linux
* [svn-r15276] added the code for using an image name from the command linePedro Vicente Nunes2008-06-251-179/+250
| | | | tested: windows, linux
* [svn-r15251] Moved all h5copy testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-203-1/+1
| | | | | | tools/h5copy/testfiles tested: linux
* [svn-r15247] Moved all h5repack testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-2017-6/+6
| | | | | | tools/h5repack/testfiles tested: linux
* [svn-r15246] Changed the shell script to avoid doing a cd $srcdirPedro Vicente Nunes2008-06-2065-391/+96
| | | | | | | | | | | | The name of the files are now given by its full name relative to $srcdir To avoid the printing of the complete full path of the test file, that hides all the other parameters for long paths, the printing of the command line is done first in TESTING with the name only of the test file, not its full path the printing in the expected output that had the file name was removed as well as 3 tests that tested error messages in which the file name was present tested: linux (in 2 different build directories relative to $srcdir), solaris
* [svn-r15238] Pedro Vicente Nunes2008-06-1976-5/+6
| | | | | | Moved all h5diff testfiles from /tools/testfiles to tools/h5diff/testfiles Tested: linux, solaris
* [svn-r15225] added a function that calls the jpeg library and writes a jgeg ↵Pedro Vicente Nunes2008-06-171-12/+180
| | | | | | file for each HDF5 image tested: windows, linux
* [svn-r15222] moved the h52jpeg testfiles location from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-172-10/+2
| | | | | | | | /tools/h52jpeg/testfiles updated the shell script accordingly tested: linux
* [svn-r15219] added a test file and a test scriptPedro Vicente Nunes2008-06-164-26/+126
| | | | | | | for now, the test script just calls the tool binary with the command line parameters, with no special checking of the accuracy of the output contents (jpeg files) tested: linux
* [svn-r15217] added a HDF5 file generator program that reads 2 realistic ↵Pedro Vicente Nunes2008-06-163-23/+221662
| | | | | | | | images from ASCII files, a true color and a gray color image the HDF5 file generated is used by h52jpeg to generate jpeg images tested: windows
* [svn-r15216] added code for the jpeg library to be linked in linux systemsPedro Vicente Nunes2008-06-162-4/+5
| | | | | | for now, just added "-ljpeg" to the list of libraries, until a permanent solution is added to configure --with-jpeg= that would allow users to specify their own jpeg libary tested: linux (kagiso, that has a jpeg library installed)
* [svn-r15190] added code to read datasets, concatenate output namesPedro Vicente Nunes2008-06-101-28/+120
| | | | tested: windows
* [svn-r15187] Purpose: Disabling h52jpeg directory from being built while ↵Mike McGreevy2008-06-102-2/+2
| | | | | | | | issues surrounding its location and its dependencies are worked out. Tested: kagiso
* [svn-r15184] added the configure and Makefile changes to build h52jpeg in ↵Pedro Vicente Nunes2008-06-095-6/+943
| | | | | | unix systems tested: linux, solaris
* [svn-r15183] Purpose: _WIN32 macro cleanupScott Wegner2008-06-095-32/+1
| | | | | | | | | | Description: As part of our Windows cleanup, we try to remove windows-specific tweaks in the source code. There are many instances where Windows code is introduces via ifdef's. We re-evaluate whether they are still required, and found that many of them are not. Others we change to "feature"-specific code, rather than Windows-specific. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagisopp, smirom, linew)
* [svn-r15178] added the routine h52jpeg that traverses the file in the same ↵Pedro Vicente Nunes2008-06-091-15/+168
| | | | | | way of h5diff/h5repack tested: windows
* [svn-r15150] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-058-33/+33
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
* [svn-r15143] Pedro Vicente Nunes2008-06-053-8/+16
| | | | | | | | | | Fix for #1169 http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1169 don't print attributes to stdout when doing binary output added an attribute to the file run on the binary output test tested: windows, linux
* [svn-r15133] Description:Quincey Koziol2008-06-044-41/+45
| | | | | | | | | | | | | | | | | | | Fixed bug in h5ls that prevented relative group listings (like "h5ls foo.h5/bar") from working correctly. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15131] Description:Quincey Koziol2008-06-031-1/+1
| | | | | | | | | | | | | | | | | | | | | | Finish omnibus chunked dataset I/O refactoring, to separate general actions on chunked datasets from actions that are specific to using the v1 B-tree index. Cleaned up a few bugs and added some additional tests also. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15124] Purpose:Albert Cheng2008-06-022-5/+16
| | | | | | | | | | | | | | bug fixes. Description: Added code to create an empty hdf5 (named h5diff_empty.h5) in order to test if h5diff compares correctly an empty hdf5 vs. a non-empty one. Tested: Tested in kagiso of h5diffgentest itself. Verified by h5dump that h5diff_empty.h5 was indeed empty. Then "h5diff h5diff_empty.h5 h5diff_basic1.h5" returned 0 (should have returned non-zero).
* [svn-r15122] command line parsing and usagePedro Vicente Nunes2008-06-021-0/+128
| | | | tested: windows
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