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* [svn-r29186] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2329-139/+1244
| | | | includes new data files
* [svn-r29179] Revert of 29177 which breaks the autotools build.Dana Robinson2016-02-2216-257/+139
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r29177] HDFFV-9654: add VDS options to h5dumpAllen Byrne2016-02-2216-139/+257
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* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-23/+23
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-23/+23
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r28918] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28885] Change TOOLTEST5 to TOOLTEST3, which does not post-process the ↵Allen Byrne2016-01-131-1/+1
| | | | files.
* [svn-r28868] HDFFV-9639: autotools script updateAllen Byrne2016-01-121-30/+35
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* [svn-r28865] HDFFV-9639: Fix double-free error by setting freed var to NULL.Allen Byrne2016-01-124-44/+91
| | | | | Verified issue with "h5dump tgroup.h5 non_existing.h5" Applied patch and retested.
* [svn-r28769] Description:Quincey Koziol2016-01-031-0/+2
| | | | | | | | More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28761] Description:Quincey Koziol2016-01-011-4/+1
| | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28742] Description:Quincey Koziol2015-12-291-0/+4
| | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-171-16/+8
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* [svn-r28669] Changes to correct errors found with -ansi flag.Larry Knox2015-12-151-3/+0
| | | | | | | | | h5tools_dump.c Removed 3 lines commented out with //. h5_vds-percival-unlim.c Changed C++-style comment to C-style comment. Tested with h5committest.new.
* [svn-r28599] Normalization of tools with revise_chunks.Dana Robinson2015-12-1116-278/+249
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28377] CMake 3.4 policy changeAllen Byrne2015-11-171-24/+24
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* [svn-r28176] HDFFV-9550: Add VS2015 fix for change of standard format.Allen Byrne2015-10-211-3/+3
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* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-202-4/+4
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r28115] Replace unreadable, unused test file with newly generated file ↵Larry Knox2015-10-161-0/+0
| | | | that can be read by h5dump from HDF5 1.6.10, 1.8.6, 1.8.16 and trunk.
* [svn-r28025] Description:Quincey Koziol2015-10-111-4/+4
| | | | | | | | Switch 'int' flag variables to booleans. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & paralel (too minor for h5committest)
* [svn-r27848] Description:Quincey Koziol2015-09-226-90/+86
| | | | | | | | Clean up warnings and some normalization against trunk. Tested: McaOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27839] Removed generated autotools stragglers missed in trunk sync.Dana Robinson2015-09-214-6008/+0
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* [svn-r27835] Description:Quincey Koziol2015-09-2141-13466/+321
|\ | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27818] Minor warning fixes.Dana Robinson2015-09-171-6/+0
| | | | | | | | Tested on: h5committest
| * [svn-r27801] Minor warning fixes in the tools.Dana Robinson2015-09-1615-236/+152
| | | | | | | | Tested on: jam (too minor for h5committest)
| * [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-1512-17521/+0
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| | * [svn-r27745] Merge trunk revision 27744Allen Byrne2015-09-101-478/+478
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| | * [svn-r27638] Merged r27500-27631 from trunk.Dana Robinson2015-09-0129-378/+469
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| | * \ [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-1416-369/+368
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| | * \ \ [svn-r27222] Merge of r27035-27221 from the trunk.Dana Robinson2015-06-1773-215/+242
| | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM: Serial: C++ and Fortran 2003 Parallel: Fortran
| | * \ \ \ [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-0723-216/+150
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| | * | | | | [svn-r26641] configure.ac:Larry Knox2015-03-282-19/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove VPATH and related search path syntax checking. Remove check for H5_LONE_COLON and checking for lone colon compiler confusion. tools/h5dump/testh5dumpxml.sh.in tools/h5dump/CMakeTestsXML.cmake Remove test skipping for compilers that were formerly confused by lone colon. Tested with h5committest.
| | * | | | | [svn-r26551] Description:Quincey Koziol2015-03-232-23/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI & HP compilers. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| | * | | | | [svn-r26435] Remove DEFAULT_LIBS from configure.ac and irix6.x config file whichJerome Soumagne2015-03-111-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | was using it. Remove references to IRIX/irix* platform.
| | * | | | | [svn-r26429] Merge of r26393-26428 from the trunk.Dana Robinson2015-03-111-1/+1
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest
| | * \ \ \ \ \ [svn-r26396] Merge of r26349-26392 from the trunk.Dana Robinson2015-03-094-109/+33
| | |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: h5committest
| | * \ \ \ \ \ \ [svn-r26350] Merge of r26273-26348 from the trunk.Dana Robinson2015-03-0412-399/+350
| | |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: h5committest
| | * \ \ \ \ \ \ \ [svn-r26274] Merge of r26096 to r26271 from trunk.Dana Robinson2015-02-2213-13/+16
| | |\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam - serial: C++/Fortran parallel: Fortran
| | * | | | | | | | | [svn-r26097] Removed configure and Makefile.in files from version control.Dana Robinson2015-02-0212-17365/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Developers will now have to run bin/reconfigure (deprecated, will be removed soon) or autogen.sh after checking out code. Part of: HDFFV-9120 Tested on: jam with Fortran and C++
| | * | | | | | | | | [svn-r26096] Merged r26024-26095 from trunk.Dana Robinson2015-02-021-1/+1
| | |\ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested on: jam with Fortran and C++
| | * | | | | | | | | | [svn-r26075] Removed (HD)BSDtimeofday and H5_HAVE_BSDGETTIMEOFDAY. This is ↵Dana Robinson2015-01-291-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | an obsolete system call from Irix 5.3. Part of HDFFV-9085 Tested on: jam
| | * | | | | | | | | | [svn-r26069] Removed the option to selectively disable internal filters like ↵Dana Robinson2015-01-2920-294/+33
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | n-bit at compile time. Fixes HDFFV-9086 Tested on: jam, both serial and parallel w/ fortran & C++
| | * | | | | | | | | | [svn-r26051] Fix for HDFFV-9092Scot Breitenfeld2015-01-2712-12/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Change AC_TRY_RUN TO AC_TRY_COMPILE Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory: aclocal_cxx.m4 (for C++ tests) aclocal_fc.m4 (for Fortran tests) tested: jam
| * | | | | | | | | | | [svn-r27768] Description:Quincey Koziol2015-09-1413-55/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | | | | | | | | | | [svn-r27760] Brought r27631-27755 over from the trunk.Dana Robinson2015-09-112-478/+479
|\ \ \ \ \ \ \ \ \ \ \ \ | |/ / / / / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | tested on: jam
| * | | | | | | | | | | [svn-r27656] HDFFV-9515: repack failed with 5 digit filter ids because a ↵Allen Byrne2015-09-011-478/+478
| | |_|_|_|_|_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | local variable in the parse routine was not large enough. Tested: local linux and windows
* | | | | | | | | | | [svn-r27646] Add version number to VDS global heap object encoding.Neil Fortner2015-09-0123-0/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix handling of layout version number. Other minor fixes/cleanup. NOTE: This commit changes the file format for VDS, all files must be re-generated. Tested: ummon
* | | | | | | | | | | [svn-r27632] Description:Quincey Koziol2015-08-312-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert changes to pass file pointer to selection serialize/deserialize routines. Also patch back in some changes that were merged out in the previous merge w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
* | | | | | | | | | | [svn-r27630] Description:Quincey Koziol2015-08-3136-307/+450
|\ \ \ \ \ \ \ \ \ \ \ | |/ / / / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring in changes from the trunk, through r27628. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| * | | | | | | | | | [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.Dana Robinson2015-08-3124-307/+435
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | gcc 4.9.2 was used to create the warning list - implicit casts - shadowed variables - various enum issues - other minor fixes (comments, unused macros, etc.) Tested on: h5committest