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* [svn-r21980] Correct HD prefix in tools for *allocAllen Byrne2012-02-249-33/+33
| | | | Checked for HD support.
* [svn-r21979] Correct HD prefix in tools for strlen and memcpyAllen Byrne2012-02-249-207/+207
| | | | Checked for HD support.
* [svn-r21978] undo HD prefixAllen Byrne2012-02-241-25/+25
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* [svn-r21974] Update HSIZE_T print statements to use correct macro.Allen Byrne2012-02-2323-968/+968
| | | | | | Fix some more HD prefix issues in tools. Tested: local linux
* [svn-r21973] Correct limited reallocation on windows.Allen Byrne2012-02-231-9/+7
| | | | Tested: local linux, windows, h5committest
* [svn-r21972] Split append statement into two parts - linew hsize_t issueAllen Byrne2012-02-231-1/+2
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* [svn-r21971] Correct HD prefixAllen Byrne2012-02-221-1/+1
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* [svn-r21970] Added missing HD prefixAllen Byrne2012-02-221-12/+12
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* [svn-r21969] Added missing HD prefixAllen Byrne2012-02-224-345/+338
| | | | Correct indentation
* [svn-r21968] Added missing HD prefixAllen Byrne2012-02-221-26/+26
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* [svn-r21967] Checked all %lu references and corrected 2 that should have ↵Allen Byrne2012-02-223-8/+8
| | | | | | | | been '%"H5_PRINTF_LL_WIDTH"u' Moved lib variables windows linking declarations to proper file location. Tested: local linux windows
* [svn-r21966] Index used in printing data uses hsize_t variables. Changed ↵Allen Byrne2012-02-211-13/+14
| | | | | | h5ls format to use HSIZE_T_FORMAT. Tested: local linux and windows 32
* [svn-r21963] Fixed issue with compression value not printing - format ↵Allen Byrne2012-02-202-28/+28
| | | | | | | | parameter was wrong, needed to be long long. Enabled compression tests Tested: 32-bit windows
* [svn-r21962] Reference file missing a return - now "be" version is similiar ↵Allen Byrne2012-02-201-0/+1
| | | | to "le" version whitespace
* [svn-r21960] Fix unsigned long long format string in xml code.Allen Byrne2012-02-192-5/+4
| | | | | | Re-enable xml tests Tested: 32-bits
* [svn-r21959] SKIP h5dump XML until MaxDims issue is resolvedAllen Byrne2012-02-181-2/+3
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* [svn-r21958] SKIP failing filter tests until compression values can be verifedAllen Byrne2012-02-181-35/+35
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* [svn-r21957] Windows DLL macro missing on data in headerAllen Byrne2012-02-181-3/+3
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* [svn-r21956] Windows DLL macro missing on functions in headerAllen Byrne2012-02-181-12/+12
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* [svn-r21955] Missed bin/reconfigure on h5dump and tools/libAllen Byrne2012-02-183-9/+19
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* [svn-r21953] HDDFV-7560: h5dump refactoringAllen Byrne2012-02-17122-11099/+22806
| | | | Tested: local linux
* [svn-r21952] HDFFV-5874: -c and -k subsettingAllen Byrne2012-02-173-292/+319
| | | | Tested:local linux
* [svn-r21942] Purpose:Jonathan Kim2012-02-141-4/+6
| | | | | | | | | | | Add shell script test case for HDFFV-7689 - h5dump fix. Description: support to add shell script test case for "HDFFV-7689 - h5dump with the -d option fails to display a dataset that has a "[" in the name." task. The svn commit for HDFFV-7689 was r21931. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r21934] Description:Quincey Koziol2012-02-131-27/+27
| | | | | | | | | Remove some leftover uses of the __FUNCTION__ macro, replacing them with FUNC macro, as used everywhere else. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel (too minor to require h5committest)
* [svn-r21931] HDFFV-7689 - could not not use a "[" character in a dataset name.Allen Byrne2012-02-1313-23/+57
| | | | | | A second problem also discovered was an if statement that should have comapered lengths of a string actually was comapring addreeses. Once thatt was fixed, The "[" character could be used but broke other functionality. Consultation with tools team resulted in the creation of a "--no-subset" option to disable interpretation of "[" character as a subsetting compact-form. This also eliminated and cleaned up the code containing the plomatic if statement. Tested: local linux and added test, CMake updated autotools test to be added next.
* [svn-r21902] Description:Jonathan Kim2012-01-301-3/+4
| | | | update a comment from buzilla# (1797) to jira# (2605). Also prevent conflict from merging source.
* [svn-r21897] Purpose:Jonathan Kim2012-01-261-63/+66
| | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5repack cmake test. Description: Update cmake script to clean up correctly. Revisit h5repack cmake test script updated from r21869. Tested: cmake test for Windows (32-LE) and jam (linux32-LE)
* [svn-r21890] Purpose:Jonathan Kim2012-01-244-11/+26
| | | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21874] Purpose:Jonathan Kim2012-01-115-56/+44
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5copy tool. Description: Update cmake script to fetch test files from anywhere. Also keep the apperance similiar to shell script for better maintainance. some updated shell script. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
* [svn-r21872] Update a comment to make clear from the previous commit ↵Jonathan Kim2012-01-111-2/+3
| | | | (r21869) for HDFFV-7840.
* [svn-r21869] Purpose:Jonathan Kim2012-01-094-57/+86
| | | | | | | | | | | | | | Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
* [svn-r21865] Purpose:Jonathan Kim2012-01-055-4/+86
| | | | | | | | | | | | | Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option Description: Segfault occurred when h5ls access region reference data in an attribute. This didn't occurred when -v option was used. The cause was "h5tool_format_t info;" struct variable members were accessed without proper values were assigned (was NULL), so printf failed later in the code. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake-Windows (32-LE)
* [svn-r21815] Description:Jonathan Kim2011-12-051-0/+4
| | | | | | | Add test case to unix test-script for "HDFFV-2567 - added test for be generated files with at least 9 attributes at root". It's committed previously as r21812 along with Cmake test. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE)
* [svn-r21814] HDFFV-2567 - added test for be generated files with at least 9 ↵Allen Byrne2011-12-053-0/+125
| | | | | | attributes at root Tested: local linux
* [svn-r21804] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-0511-11/+11
| | | | standard 2.8.6
* [svn-r21715] Correct SET_TARGET_PROPERTIES commandsAllen Byrne2011-11-043-7/+1
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* [svn-r21667] Update FOLDER solution option for target properties. Added ↵Allen Byrne2011-10-259-21/+25
| | | | | | OPTION command for solution folder and no packaging. Tested: local linux
* [svn-r21664] Added solution folders for most of the projects. This still ↵Dana Robinson2011-10-2510-0/+28
| | | | | | needs some polish - the solution folder assignment should go closer to the target declaration and not all projects are grouped (parallel, c++, fortran, hl, and a few others). Tested on Windows.
* [svn-r21658] Purpose:Jonathan Kim2011-10-249-32/+78
| | | | | | | | | | | HDFFV-7770 - h5diff segmentation fault on JPSS files Description: Fixed segfault over non-comparable attribute with different dimention or rank, along with '-c' option to display details. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows, Cmake
* [svn-r21629] Purpose: Update fix committed in r21556Neil Fortner2011-10-201-87/+87
| | | | | | | | Description: An old patch was mistakenly committed in r21556. Replaced this fix with the latest. Tested: jam, koala, heiwa (h5committest)
* [svn-r21603] Purpose: Add generic skip list implementationNeil Fortner2011-10-181-1/+1
| | | | | | | | | | | | | Description: Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a client-supplied callback for key comparison. This was added to support the upcoming "merge named datatype" feature for H5Ocopy, but may be used in other places as well. Also added testing. Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added testing for that. Tested: jam, koala, heiwa (h5committest), durandal
* [svn-r21586] Description:Jonathan Kim2011-10-147-18/+64
| | | | | | | | | Added a funtion to reset dataset & hyperslab buffer size for h5repack from an environment variable. This is performance debugging purpose for now. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE), cmake
* [svn-r21489] Bug:Albert Cheng2011-10-071-4/+4
| | | | | | | | | | | h5dump was used in test script but was not invoked by RUNSERIAL. THis does not work in batch machines like Blue Gene in LLNL. Solution: Added $RUNSERIAL to invoke $H5DUMP_BIN. Tested: LLNL BlueGene (udawn)
* [svn-r21457] Problem:Albert Cheng2011-10-041-0/+10
| | | | | | | | | | | Function TOOLTEST_OUTPUT does not filter the extra system messages sent to stdout or stderr, thus causing output mismatched with expected output. Solution: Added STDOUT_FILTER and STDERR_FILTER to filter them out. Tested: Tested LLNL uDawn (Blue-Gene cluster), for serial mode only.
* [svn-r21413] Description:Jonathan Kim2011-09-231-2/+8
| | | | | | | | | | Skip parallel diff test "-c non_comparables1.h5 non_comparables2.h5" due to hanging issue occurring on koala (linux64-LE) intermittently. Plan to put back when resolved. The test was related to J7693. Tested: jam (linux32-LE), koala (linux64-LE)
* [svn-r21396] Purpose:Jonathan Kim2011-09-1627-40/+306
| | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21389] Test case added for HDFFV-5932 - h5repack breaks files with ↵Jonathan Kim2011-09-141-4/+2
| | | | | | | dimension scales. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r21386] Fixed a void pointer (need to cast it to char*) because it ↵Peter Cao2011-09-141-4/+4
| | | | causes problem on Windows.
* [svn-r21382] Update values of references(object and region) of attributes in ↵Peter Cao2011-09-142-160/+324
| | | | h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references.
* [svn-r21378] The tools used "%hhd" to print signed char. But VMS doesn't ↵Raymond Lu2011-09-133-3/+19
| | | | | | know it. So I used H5_VMS to have a different way ("%hd") to print it. Tested on jam. Not tested on VMS yet. Simple change.
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