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* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-318-47/+47
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24285] Eliminate several "passing argument ... with different width ↵Larry Knox2013-10-102-14/+14
| | | | | | due to prototype" warnings by casting constants to size_t where expected by string functions. Tested on jam, koala,ostrich and platypus with h5committest.
* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-092-2/+3
| | | | tested with h5committest
* [svn-r24224] HDFFV-8529: Space separate define stringsAllen Byrne2013-09-303-8/+8
| | | | Tested: h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-2411-0/+11
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24172] Position trunk/1.8 vars in similar location for comparison.Allen Byrne2013-09-191-3/+3
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* [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.Allen Byrne2013-09-192-13/+27
| | | | | | | Add more usage info for UserMacros. Add new option information about the Plugin default path. Tested: local linux, jam
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-136-23/+24
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r24137] Cast constants to specified type. Allen Byrne2013-09-131-35/+35
| | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Tested: local linux
* [svn-r24124] HDFFV-8345: Changed usage txt to use dsetN instead ofletters ↵Allen Byrne2013-09-112-79/+42
| | | | | | for objects in examples. Tested: local linux
* [svn-r24120] HDFFV-8345: plugin test properly checks static-exec result to ↵Allen Byrne2013-09-103-4/+6
| | | | | | include test. Tested: jam
* [svn-r24118] Comment out test until configure sets conditional correctlyAllen Byrne2013-09-091-1/+1
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* [svn-r24116] Correct indentation and create single exit point.Allen Byrne2013-09-094-3426/+3270
| | | | Tested : local linux
* [svn-r24115] Reduce warnings for conversions of different widths.Larry Knox2013-09-063-571/+571
| | | | h5committested on jam, ostrich, koala, and platypus.
* [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.Allen Byrne2013-09-0619-540/+2104
| | | | | | Reviewed in H5T-61 Tested: local linux - cmake and autotools
* [svn-r24101] Description:Quincey Koziol2013-09-055-33/+43
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24077] Updated -help output for compile scripts for changing default ↵Larry Knox2013-08-271-4/+6
| | | | | | from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static). Tested with h5committest on jam, koala, ostrich and platypus.
* [svn-r24066] Eliminate switch default warning by printing err message.Allen Byrne2013-08-232-10/+106
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* [svn-r24058] Coorect usage text wrt dataset subsettingAllen Byrne2013-08-229-9/+9
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* [svn-r24057] Add --superblock long name to parser and add tests for both ↵Allen Byrne2013-08-225-0/+53
| | | | | | --boot-block and --superblock. Tested: local linux
* [svn-r24053] HDFFV-8498: --minimum option was disabled by HDFFV-8214. ↵Allen Byrne2013-08-213-7/+56
| | | | | | | | Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff. Corrected test scripts for test folder path Tested: h5committest and local linux with CMake
* [svn-r24050] HDFFV-8498: --minimum option was disabled by HDFFV-8214. ↵Allen Byrne2013-08-215-4/+180
| | | | | | Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff. Tested local linux with CMake
* [svn-r24030] Description:Quincey Koziol2013-08-197-135/+144
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-1920-6664/+6724
| | | | | | developers. Tested: local linux
* [svn-r24023] Added tests to CMakeLists.txt that were only added to the *nix ↵Allen Byrne2013-08-191-0/+91
| | | | | | script. Tested: local linux
* [svn-r24022] any_object option should be any_pathAllen Byrne2013-08-193-5/+5
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* [svn-r24020] Description:Quincey Koziol2013-08-178-46/+44
| | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24015] A bug fix when merging changes from the trunk to 1.8 for h5stat ↵Vailin Choi2013-08-161-15/+24
| | | | | | | bug fix HDFFV-1238: Fix a problem when using opt_arg that is NULL for the new options added: -l N, -m N, -a N. h5committested.
* [svn-r24011] Description:Quincey Koziol2013-08-154-3/+27
| | | | | | | | Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r24002] Fix 32-bit and valgrind issues with new handle_paths code - ↵Allen Byrne2013-08-131-1/+1
| | | | | | correct math of adding a NULL to a string. Tested: local linux (valgrind) and h5committest
* [svn-r23999] Move declaration to top of block - fix for windows.Allen Byrne2013-08-131-1/+1
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* [svn-r23996] HDFFV-7989: Add any_path option to search the file for paths. ↵Allen Byrne2013-08-1215-2/+323
| | | | | | New test added, scripts updated, help text updated. Tested: local linux
* [svn-r23994] Correct printf % handlingAllen Byrne2013-08-129-9/+9
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* [svn-r23991] Reorder groupingAllen Byrne2013-08-129-207/+207
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* [svn-r23976] The following files were missing from previous checkin rev ↵Vailin Choi2013-08-0817-0/+440
| | | | | | #23975 for bug HDFFV-1238. h5committested.
* [svn-r23975] This checkin contains--Vailin Choi2013-08-0813-124/+535
| | | | | | | | | A) Fix for HDFFV-1238: --Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c) --Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c) --Add tests for the new options (tools/h5stat/testh5stat.sh.in) --Update expected output files (tools/h5stat/testfiles/*.ddl) B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c)
* [svn-r23964] Corrected "continuous" layout to "contiguous in h5repack -h ↵Larry Knox2013-08-022-2/+2
| | | | | | | | output and comment. Jira issue HDFFV-8493. No test - text only change.
* [svn-r23960] HDFFV-8490: Reorder and group h5dump help text.Allen Byrne2013-08-019-224/+285
| | | | Tested: local linux
* [svn-r23953] Update stream handling to allow binary mode - due to unjam fix.Allen Byrne2013-07-313-18/+61
| | | | Tested: local linux
* [svn-r23952] Update unjam file handling to eliminate infinite loops and use ↵Allen Byrne2013-07-311-29/+35
| | | | | | binary mode. Tested: windows
* [svn-r23945] fixed HDFFV-8306Peter Cao2013-07-301-72/+33
| | | | using file stream for output data
* [svn-r23944] Move stream functions into tools lib.Allen Byrne2013-07-303-178/+230
| | | | Tested: local linux
* [svn-r23917] Bug fix: HDFFV-8392Albert Cheng2013-07-182-2/+2
| | | | | | | | | | | | | | | | | | | tools/h5diff/testh5diff.sh is run in every "make check", even after it has passed in the previous run. The error was in the previous change made to Makefile.am when testh5diff.sh.in was created. The mistake was in the SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh $(srcdir)/testh5diff.sh no longer existed. It is now generated in the current built directory from $(srcdir)/testh5diff.sh.in (which configure takes care of). I updated the dependance to SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh and that fixes the error. Reviewed: HDF5-149 Tested: h5committested.
* [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.Mohamad Chaarawi2013-07-031-2/+2
| | | | | | This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r23830] HDFFV-8476: Add the optional arg to the help usage text.Allen Byrne2013-06-269-5/+9
| | | | Tested: local linux
* [svn-r23829] HDFFV-8134: allow exclusion of attributes. This implements the ↵Allen Byrne2013-06-268-17/+126
| | | | | | technique and creates a test. Help changes will be added after trunk tests pass the test cycle. Tested: local linux
* [svn-r23825] Bug HDFFV-8469: C++ comments in C code.Albert Cheng2013-06-262-3/+0
| | | | | | | | Found and removed two more "//" comments. Tested: in Koala by $ env CFLAGS="-ansi" ../hdf5/bin/buildhdf5 -fortran -cxx -config # enable fortran and cxx, configure only $ make AM_CFLAGS=-ansi # compile all source file by setting HDF5 build CFLAGS as "-ansi" only
* [svn-r23819] Change name of generated file in test to use the macro based ↵Allen Byrne2013-06-251-8/+2
| | | | | | removal line. Tested: local linux
* [svn-r23811] Remove unused labelAllen Byrne2013-06-241-1/+0
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* [svn-r23800] Added the HD prefix to the system functions used in the ↵Allen Byrne2013-06-201-9/+9
| | | | h5tools_str_replace function.
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