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* [svn-r12504] Pedro Vicente Nunes2006-07-272-151/+169
| | | | | | | | | | | | bug fix calling h5tools_get_fapl running the mpio driver caused H5FD_pl_copy to fail silently in some conditions. a MPI call was made before MPI_Init. solution: corrected the MPI call to be made after MPI_Init and added error return conditions to H5FD_pl_copy and h5tools_get_fapl tested on copper parallel, mir, shanti
* [svn-r12490] Pedro Vicente Nunes2006-07-211-6/+6
| | | | commented h5copy calls that are failing with mpicc compiler
* [svn-r12489] removed some whitespacePedro Vicente Nunes2006-07-211-12/+2
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* [svn-r12487] Pedro Vicente Nunes2006-07-201-3/+1
| | | | updated some comments
* [svn-r12486] added some tests to the h5copy shell scriptPedro Vicente Nunes2006-07-201-6/+24
| | | | tested: shanti, mir
* [svn-r12483] Removed some white space from h5copy.cPedro Vicente Nunes2006-07-191-11/+11
| | | | | | his line, and those below, will be ignored-- M h5copy/h5copy.c
* [svn-r12482] new tool h5copyPedro Vicente Nunes2006-07-196-2/+1290
| | | | | | | | it uses the API function H5Gcopy to copy groups and datasets from file to file, read from a command line note: the test script is not finished yet tested on heping, copper, shanti
* [svn-r12474] Quincey Koziol2006-07-151-25/+25
| | | | | | | | Clean up some compiler warnings. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12467] Rename h5stat output file to avoid lower/upper-case filename ↵MuQun Yang2006-07-142-1/+1
| | | | clash on Windows
* [svn-r12456] Mark dumper output file as binary, missed during CVS conversionQuincey Koziol2006-07-071-2/+1
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* [svn-r12452] Purpose:James Laird2006-07-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12444] Purpose:Pedro Vicente Nunes2006-06-286-9/+67
| | | | | | | | | | | | | | | | | | | | new feature Description: added support for h5dump to dump binary data using the file type format added one test to the test script that tests this Solution: Platforms tested: mir shanti copper Misc. update:
* [svn-r12440] Purpose:Quincey Koziol2006-06-2720-694/+694
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12438] Purpose:Pedro Vicente Nunes2006-06-261-1/+1
| | | | | | | | | | | | updated some comments Description: Solution: Platforms tested: Misc. update:
* [svn-r12437] Purpose:Pedro Vicente Nunes2006-06-269-33/+647
| | | | | | | | | | | | | | | | | | | | | | new feature. h5dump output of binary data Description: a new switch -b FILE_NAME that dumps the contents of memory data to file FILE_NAME in binary form new program binread.c that reads the contents of this file and outputs it to stdout added a test for the h5dump shell script that does a run of -b the binread.c program reads the data used in this run, usage is ./binread FILE_NAME Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12431] Purpose:James Laird2006-06-2117-166/+77
| | | | | | | | | | | | | | Configuration feature Description: 'make install' now tests both static and shared libraries if both are installed. Solution: Previously, shared libraries were only tested when static libraries were not installed. Also cleaned up line in commence.am that was including HL library in all Makefiles. Platforms tested: mir (Makefile change only)
* [svn-r12419] Purpose: Maintenance/new featureElena Pourmal2006-06-189-0/+165
| | | | | | | | | | | | Description: Added new tests for the h5stat tool; added --version flag to display library version information and updated expected output files. Solution: Platforms tested: heping, shanti Misc. update:
* [svn-r12418] Purpose: Maintenance/new featureElena Pourmal2006-06-182-2/+23
| | | | | | | | | | | Description: Added new tests for the h5stat tool; added --version flag to the h5stat tool to display library version information Solution: Platforms tested: heping, shanti Misc. update:
* [svn-r12416] Purpose: MaintenanceElena Pourmal2006-06-175-8/+174
| | | | | | | | | | | | | | Description: Added test script and two test files in the tools/misc/testfiles directory for testing h5stat tool; modified Makefile.am in tools/misc and configure.in files to run the new test script; reran bin/recofigure to update relevant configuration files; updated MANIFEST Solution: Platforms tested: heping with in place and srcdir builds; will do more testing after the checkin. Misc. update:
* [svn-r12411] Purpose:James Laird2006-06-1311-5/+34
| | | | | | | | | | | | | | Bug fix - bugzilla #552 Description: On Cray X1, trying to use : as an argument confused the system. Solution: Added a test in configure to see if : as an argument is bad. If so, skipped the test. Platforms tested: mir, Cray X1 (change to configure only)
* [svn-r12402] Purpose: New featuresElena Pourmal2006-06-043-82/+318
| | | | | | | | | | | | | | | | | | | | Description: I am checking in changes for the h5stat tool: - updated Makefile.am to use tools library - regenerated Makefile.in - added command flags to display selected information - added support for external files and filters - small output formatting changes For more information about current features and output see updated h5stat RFC http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf Solution: Platforms tested: mir, heping, shanti, copper 64-bit, copper 32-bit parallel using files from tools/testfiles directory and some NASA files from our Web site. Misc. update:
* [svn-r12358] Purpose:Albert Cheng2006-05-199-9/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12349] Purpose:Quincey Koziol2006-05-151-14/+37
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12304] Purpose:Pedro Vicente Nunes2006-04-261-3/+6
| | | | | | | | | | | | | | | bug fix Description: the diff region output was done in verbose mode Solution: avoid it in verbose Platforms tested: linux Misc. update:
* [svn-r12303] Purpose:Pedro Vicente Nunes2006-04-266-7/+7
| | | | | | | | | | | | | | new feature Description: modified the test case for region points, so that there is not an ordered sequence of points that differ, but one with gaps Solution: Platforms tested: linux Misc. update:
* [svn-r12298] Purpose:Pedro Vicente Nunes2006-04-251-0/+13
| | | | | | | | | | | | one more test file forgotten in the last check in Description: Solution: Platforms tested: Misc. update:
* [svn-r12297] Purpose:Pedro Vicente Nunes2006-04-2515-2640/+2775
| | | | | | | | | | | | | | | | | new feature Description: added support for the printout of dataset region references differences added a new test for this merged the h5diff generator of test files into a single file Solution: Platforms tested: linux 32, 64 solaris Misc. update:
* [svn-r12295] Purpose:James Laird2006-04-219-27/+27
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12254] Purpose:Quincey Koziol2006-04-1410-103/+144
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12229] Purpose:Pedro Vicente Nunes2006-04-1217-32/+57
| | | | | | | | | | | | | | | | | | | | | new feature Description: 1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library 2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in) 3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h Solution: Platforms tested: linux 32, 64 AIX solaris with fortran and c++ (one packet table example fails) Misc. update:
* [svn-r12221] Purpose:Quincey Koziol2006-04-1012-7/+7
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12218] Purpose:Quincey Koziol2006-04-101-8/+1
| | | | | | | | | | | | | Code cleanup Description: Remove remnents of references to unimplemented H5S_COMPLEX dataspace. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12211] Purpose:Pedro Vicente Nunes2006-04-073-9/+5
| | | | | | | | | | | | | | | | new feature Description some more check in related to the print of compression ratios: print warning messages after the print of the dataset name and compression: Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12208] Purpose:Pedro Vicente Nunes2006-04-064-8/+19
| | | | | | | | | | | | | | | | new feature Description: some more formatting for the new printout of compression ratios Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12207] Purpose:Pedro Vicente Nunes2006-04-061-14/+27
| | | | | | | | | | | | | | | | | new feature Description: some more formatting of the output for the new compression ratio printout Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12206] Purpose:Pedro Vicente Nunes2006-04-061-8/+11
| | | | | | | | | | | | | | | | new feature Description: added some alignment for the printout of attributes, so that is formatted with the new printout of datasets compression Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12205] Purpose:Pedro Vicente Nunes2006-04-0610-99/+119
| | | | | | | | | | | | | | | | new feature Description: added the printout of the compression ratio for filters in h5repack, after the filter name, obtained with H5Dget_storage_size, before and after applying the filter Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12199] Purpose:Pedro Vicente Nunes2006-04-042-4/+4
| | | | | | | | | | | | | | | | | | | bug fix Description: the percent error calculation in h5diff using double precision floating point were causing different results on the release and debug versions of Visual Studio version 6, due to a compiler bug Solution: used single precision (float) Platforms tested: windows linux solaris AIX Misc. update:
* [svn-r12196] Purpose:Pedro Vicente Nunes2006-04-032-0/+154
| | | | | | | | | | | | | | | bug fix Description: h5ls was not printing root group attributes Solution: Platforms tested: linux 32, 64 solaris Misc. update:
* [svn-r12171] Purpose:Pedro Vicente Nunes2006-03-289-110/+257
| | | | | | | | | | | | | | | | | | | | | | | bug fixes Description: h5dump/h5ls were not displaying long doubles correctly Solution: 1) the print datatype functions were incorrectly testing for the valid return value from H5Tequal, (TRUE), causing the display of an incorrect name of a dataype in error cases from H5Tequal 2) h5tools_print_str did not have a case for native long double 3) added a file generator for a long double dataset 4) added one script test for the long double data (commented , some sytems don't have a native long double match, and the output differs) 5) added a vms file and h5dump script test Platforms tested: linux 32, 64 solaris AIX Misc. update:
* [svn-r12159] Purpose:Pedro Vicente Nunes2006-03-278-87/+92
| | | | | | | | | | | | | | | | | bug fix Description: h5repack was not dealing with family files Solution: use the toolslib function h5tools_open to open the file instead of H5Fopen in h5repack Platforms tested: linux solaris AIX Misc. update:
* [svn-r12158] Purpose:Pedro Vicente Nunes2006-03-276-292/+372
| | | | | | | | | | | | | | | | bug fix Description: h5dump was not printing attributes for the named datatype cases Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r12157] Purpose:Pedro Vicente Nunes2006-03-271-0/+0
| | | | | | | | | | | | | | bug fix Description: regenerate a binary file. the previous one was not being open on the scale offeset filter dataset, probably due to a solved bug with the corresponding binary file not being updated Solution: Platforms tested: linux Misc. update:
* [svn-r12149] Purpose:James Laird2006-03-239-63/+9
| | | | | | | | | | | | | | | | Bug fix Description: Previous checkin did a bad thing; 'make clean' failed in example directories. Solution: Fixed commence.am so that examples no longer break, and fixed a mistake in conclude.am. Platforms tested: heping (minor makefile change) Misc. update:
* [svn-r12146] Purpose:Pedro Vicente Nunes2006-03-2313-18/+100
| | | | | | | | | | | | | | | | | bug fix Description: percent relative error was done using integer arythmetic; use floating point instead added the case for unsigned long long integer to float conversion Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12143] Purpose:James Laird2006-03-239-0/+36
| | | | | | | | | | | | | | Bug fix Description: make check-clean didn't clean results of example tests Solution: Fixed Makefiles so that check-clean recurses into example directories. Also a little Makefile cleanup. Platforms tested: mir, modi4, heping, copper
* [svn-r12140] Purpose:MuQun Yang2006-03-231-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | portable issue on windows Description: setvbuf on visual studio 2005 needs the size to be greater or equal to 2. <description of setvbuf from msdn library> Buffer size in bytes. Allowable range: 2 <= size <= INT_MAX (2147483647). Internally, the value supplied for size is rounded down to the nearest multiple of 2. h5import used linebuffer option of setvbuf for stderr and stdout and the size is 0 by default. This causes core dump with visual 2005 on windows 64-bit. Solution: 1. Use HDsetvbuf inside h5import.c, 2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around the core dump of h5import test. This is probably a bug inside visual studio 2005. Platforms tested: h5committest( shanti refuses to be connected) windows 6.0 at XP visual 2005 at XP-64bit Misc. update:
* [svn-r12134] Purpose:Pedro Vicente Nunes2006-03-2236-1666/+1712
| | | | | | | | | | | | | | | | | | bug fix Description: 1) added a more explainative usage message 2) the percent relative error for the integer type (division) was being done using integer arythmetic; use floating point arythmetic instead 3) added a new test for integer percent Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12128] Purpose:Quincey Koziol2006-03-222-0/+2
| | | | | | | | | | | Code cleanup Description: Clean up some compiler warnings (esp. those flagged on Windows builds) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12126] Purpose:Pedro Vicente Nunes2006-03-215-316/+261
| | | | | | | | | | | | | | | | | bug fix Description: the compare check for the datatype sign was not done in the correct place, causing invalid comparisons to be made Solution: put it on the correct place Platforms tested: linux 32, 64 AIX Misc. update:
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