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* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-09249-8050/+10153
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* Modifications for the following items in the punch list:Vailin Choi2019-11-141-4/+1
| | | | | | | | | (A) #5: Add the "pb_expansion_threshold" field to the "H5F_vfd_swmr_config_t" structure and update H5Pset_vfd_swmr_config() and H5Pget_vfd_swmr_config() accordingly (B) #13 bullet 2: Comment H5F_vfd_swmr_config_t in H5Fpublic.h properly (copied from John's description in the RFC) (C) Change the field name "vfd_swmr_writer" to "writer" in "struct H5F_vfd_swmr_config_t" (as indicated on page 11 in the RFC) and all references to it
* Expect the h5ls usage message to mention --poll twice.David Young2019-10-215-0/+10
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* First, reduce code duplication in h5tools_fopen(). Then, stop h5tools_fopen()David Young2019-10-211-33/+22
| | | | | from using the SWMR VFD unless the h5tools_fopen() arguments specifically choose that VFD.
* Fix some tools: try all other VFDs before SWMR.David Young2019-10-181-3/+3
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* Introduce PRI*HADDR and PRI*HSIZE for printing haddr_t and hsize_t.David Young2019-10-034-15/+15
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* Make some NetBSD compatibility patches.David Young2019-10-031-2/+2
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* Use calloc instead of malloc so that the VFD SWMR configurationDavid Young2019-09-171-1/+1
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* Enable h5ls to use VFD SWMR.David Young2019-09-122-31/+133
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Dana Robinson2018-09-246-13/+25
|\ | | | | | | | | | | | | | | | | | | * commit '2618dc314b9e4875e6ece7ee8696846ac2d02183': Remove extra unneeded Remove libsettings from pregenerated block CMake changes for SKIPPED and flush tests Correct $withval usage in configure HDFFV-10332 Adjust checks and generation of files HDFFV-10332 Use pre-generated files
| * CMake changes for SKIPPED and flush testsAllen Byrne2018-09-246-13/+25
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* | Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-243-5/+5
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* Snapshot version 1.11 release 2.hdftest2018-09-201-7/+7
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* Develop normalization with vol_integration.Dana Robinson2018-09-197-289/+255
| | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-1811-138/+102
| | | | orginally intended to support the full SWMR feature.
* Cleanup and add intermediate dir for javaAllen Byrne2018-08-311-3/+0
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* HD prefix and whitespaceAllen Byrne2018-08-286-236/+236
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* Merge pull request #1157 in HDFFV/hdf5 from ↵Allen Byrne2018-07-302-3/+3
|\ | | | | | | | | | | | | ~JHENDERSON/hdf5:bugfix/CMake_MPI_libs_fix to develop * commit 'd075c0854d1ffb5a8eae23c5eb9a4456067f30c9': Add quotes to places where MPI_C_LIBRARIES are linked against
| * Add quotes to places where MPI_C_LIBRARIES are linked againstJordan Henderson2018-07-272-3/+3
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* | Add missing test optionAllen Byrne2018-07-241-1/+1
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* | Add test file with unwritten datasetsAllen Byrne2018-07-244-4/+425
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* Merge branch 'develop' of ↵Larry Knox2018-07-1818-135/+441
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * Changes based on feedback from pull request.Vailin Choi2018-07-122-3/+2
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| * Modifications made based on feedback from pull request.Vailin Choi2018-07-114-12/+31
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| * Fix for HDFFV-10333:Vailin Choi2018-07-1116-132/+420
| | | | | | | | | | | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* | Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-181-0/+2
| | | | | | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* | Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-7/+7
| | | | | | | | | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-0419-54/+740
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| * Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-311-0/+684
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| | * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-1527-246/+205
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| | * \ Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-3027-364/+280
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| | * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-301-0/+684
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-2322-52/+56
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * | | | | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-1415-43/+42
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-1428-248/+211
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| * | | | | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-2418-54/+57
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* | | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-2222-52/+56
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| * | | | | Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-0922-52/+56
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* | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-1027-246/+205
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| * | | | Text cleanupAllen Byrne2018-05-082-42/+18
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| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-301-2/+6
| |\ \ \ \ | | | |_|/ | | |/| | | | | | | | | | | | | | | | | | | | | | * commit '1f8cb03e11a46f853881f45dac18eff2dd68401e': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean') Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| * | | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-2625-204/+187
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* | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-0853-628/+603
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| * | | Fix errors in Makefile.am files that cause "make check" to repeat test, evenQuincey Koziol2018-04-291-2/+6
| |/ / | | | | | | | | | | | | when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
| * | TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-2026-26/+26
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| * | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-1726-335/+247
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| * HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-106-8/+8
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| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-03-291-0/+6
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| | * Add missing test fileAllen Byrne2018-03-281-0/+2
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| | * Add missing test which is in autotoolsAllen Byrne2018-03-271-0/+4
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