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* [svn-r21101] HDFFV-7639Mike McGreevy2011-07-141-7/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: jam, h5committest, ember
* [svn-r21072] Purpose:Jonathan Kim2011-07-071-4/+30
| | | | | | | | | | | | Work for HDFFV-7600 - GMQS: h5diff - argument options -d, -p and --use-system-epsilon should be mutually exclusive. Description: Fixed h5diff to display instructive error message and exit with 1 when mutually exclusive options (-d, -p and --use-system-epsilon) are used together. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21055] Correct proj file tag mismatchAllen Byrne2011-06-301-328/+328
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* [svn-r21033] Snapshot version 1.9 release 84HDF Tester2011-06-261-3/+3
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* [svn-r21000] Snapshot version 1.9 release 83HDF Tester2011-06-191-3/+3
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* [svn-r20922] Snapshot version 1.9 release 82HDF Tester2011-05-291-3/+3
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* [svn-r20903] Removed PACKED_BITS check to match removal of option in codeAllen Byrne2011-05-251-3/+80
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* [svn-r20890] Snapshot version 1.9 release 82HDF Tester2011-05-231-3/+3
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* [svn-r20676] Purpose:Jonathan Kim2011-04-291-6/+6
| | | | | | | | | | | | | | | | - HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Fixed: 1) adding h5tools_is_obj_same() function to check if two given IDs or paths point to the same object. This function can be very useful for other tools and applications. 2) using h5tools_is_obj_same() at h5diff() and diff() in h5diff.c. If two paths point to the same object, there is no need to check the details of the object since we know there is no difference. The fix will increase the performance by skipping the content comparison. It also fixed the problem of reporting difference for some cases of comparing the same file, e.g. empty files or files with incomparable objects the same file. Test update: Updat prvious test cases (171, 172, 530) affected by this fix, so they still perfrom originally intended testing without bypassing. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20501] Added missing '1' to #define H5_HAVE_GETTIMEOFDAYDana Robinson2011-04-141-1/+1
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* [svn-r20499] Fixes erroneous H5_HAVE_GETTIMEOFDAY behavior on Windows (JIRA ↵Dana Robinson2011-04-141-3/+3
| | | | | | | | HDFFV-5931). Previously, H5_HAVE_GETTIMEOFDAY was never properly defined. The timezone struct and Wgettimeofday() timezone output was also added. This is a merge of several changesets from the log_vfd branch where this work took place: 20355, 20359, 20411, 20413, 20431, 20460 Tested on: Windows
* [svn-r20476] Removed all references to memory.hDana Robinson2011-04-111-3/+0
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* [svn-r20405] Description:Quincey Koziol2011-04-041-3/+3
| | | | Bump patch release number, after giving out private snapshots.
* [svn-r20384] Purpose:Jonathan Kim2011-03-311-2/+12
| | | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Merged from HDF5 1.8 branch r20369. Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20294] Purpose:Jonathan Kim2011-03-221-0/+48
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. This fix covers all other cases. Also didn't display useful information about attribute difference. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20265] Cleanup due to project file syncing with 1.8 branchAllen Byrne2011-03-175-50/+10
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* [svn-r20254] Description:Jonathan Kim2011-03-151-2/+2
| | | | | | | | | h5ls is used to verify for the result, so change the two tests not to run h5diff like others. This is related to the previous checkin SVN r18398 for Bug#1733. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20141] Bring 1.8 r20139 cmake and windows changes to trunkAllen Byrne2011-02-2219-235/+957
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* [svn-r20132] Purpose:Jonathan Kim2011-02-211-1/+1
| | | | | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: improve the test case from previous checkin r20108, which also display dataset via region reference. Previous Log: h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
* [svn-r20108] Purpose:Jonathan Kim2011-02-151-0/+1
| | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19971] Purpose:Jonathan Kim2011-01-211-0/+3
| | | | | | | h5dump: add dangling external link test case as part of Chicago project. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19936] Add new signed/unsigned test to legacy test scriptAllen Byrne2011-01-101-0/+3
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* [svn-r19751] Purpose:Jonathan Kim2010-11-091-0/+3
| | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32)
* [svn-r19740] Snapshot version 1.9 release 79HDF Tester2010-11-071-3/+3
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* [svn-r19712] Purpose:Jonathan Kim2010-11-021-0/+8
| | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (Mac32)
* [svn-r19701] Snapshot version 1.9 release 78HDF Tester2010-10-311-3/+3
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* [svn-r19666] Snapshot version 1.9 release 77HDF Tester2010-10-241-3/+3
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* [svn-r19628] Because h5diff fix (bug1975) which can compare groups ↵Jonathan Kim2010-10-181-6/+6
| | | | recursively, h5copy diff tests no longer should fail.
* [svn-r19569] Snapshot version 1.9 release 76HDF Tester2010-10-101-3/+3
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* [svn-r19512] Snapshot version 1.9 release 75HDF Tester2010-10-051-3/+3
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* [svn-r19447] Fix for Windows legacy test added for 1890 h5diff exclude-pathJonathan Kim2010-09-211-2/+2
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* [svn-r19443] Purpose:Jonathan Kim2010-09-201-0/+4
| | | | | | | | | | Fix for group comparison with exclude-path case. Use relative path. Description: Related to "1890: h5diff excluding object for file comparison via command line" checkins. (r19406) Tested: jam, amani and heiwa
* [svn-r19430] Update to H5REPACK tests for layout info required a new ↵Allen Byrne2010-09-201-23/+161
| | | | | | function in batch file Tested: Windows
* [svn-r19425] Fix for legay Windows test for h5diff updates.Jonathan Kim2010-09-201-8/+10
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* [svn-r19409] Purpose: Jonathan Kim2010-09-161-0/+27
| | | | | | | | | | | Add extra test cases for bug1975 h5diff - support recursive comparison on group when specified as an object. Description: Additional tests for combination of group recursive and --follow-symlinks with multi-linked external links with several files (same name/strucure). Tested: jam, amani, heiwa
* [svn-r19406] Purpose:Jonathan Kim2010-09-161-0/+35
| | | | | | | | | | | Add --exclude-path option Description: Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani and heiwa
* [svn-r19400] Purpose:Jonathan Kim2010-09-161-29/+93
| | | | | | | | | | Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly. Tested: jam, amani, heiwa
* [svn-r19135] Added new file to windows project files.Allen Byrne2010-07-282-4/+12
| | | | Added new file to src/CMakeLists.txt
* [svn-r19086] Snapshot version 1.9 release 74HDF Tester2010-07-181-3/+3
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* [svn-r19064] Snapshot version 1.9 release 73HDF Tester2010-07-111-3/+3
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* [svn-r19051] Purpose:Jonathan Kim2010-07-071-0/+11
| | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Tested: jam, amani and heiwa
* [svn-r19047] Snapshot version 1.9 release 72HDF Tester2010-07-041-3/+3
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* [svn-r19031] Snapshot version 1.9 release 71HDF Tester2010-06-281-3/+3
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* [svn-r19025] Correct defines for zlib and szipAllen Byrne2010-06-211-10/+9
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* [svn-r19022] Snapshot version 1.9 release 70HDF Tester2010-06-201-3/+3
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* [svn-r18949] Corrected where the static *.mod files are installed toAllen Byrne2010-06-021-6/+6
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* [svn-r18947] Purpose:Jonathan Kim2010-06-021-6/+22
| | | | | | | | Update Windows testing for h5ls according to the updates for Support follow symbolic links. Description: Sync with hdf5 trunk SVN r18943
* [svn-r18930] Enabled mf test since it is fixed.Allen Byrne2010-06-011-2/+1
| | | | Tested: windows
* [svn-r18877] Update testh5diff.bat for --follow-symlinks changeAllen Byrne2010-05-211-76/+76
| | | | Tested: windows
* [svn-r18823] Snapshot version 1.9 release 69HDF Tester2010-05-161-3/+3
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