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* [svn-r21600] add new files to legacy projectsAllen Byrne2011-10-182-125/+145
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* [svn-r21599] add new files to legacy projectsAllen Byrne2011-10-182-3090/+3054
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* [svn-r21588] Snapshot version 1.8 release 8 (snap18)HDF Tester2011-10-171-3/+3
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* [svn-r21528] Merge of 21517 and 21520 from trunk:Dana Robinson2011-10-121-25/+107
| | | | | | | | | | - Added checks for clock_gettime() to configure.in. Tested on Linux, FreeBSD, Solaris, MacOSX to ensure they are found correctly and everything builds. No code currently reliess on clock_gettime(). - Brought Windows and VMS H5pubconf.h files into sync with the Linux file. Some data sizes were corrected in both VMS and Windows. Tested on Windows. Ray will test on VMS when this is pushed to the 1.8.x branch.
* [svn-r21500] Snapshot version 1.8 release 8 (snap17)HDF Tester2011-10-101-3/+3
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* [svn-r21479] Merge revision 21101 from trunk to 1.8 branch:Mike McGreevy2011-10-051-7/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-7639 Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: Jam, h5committest, Ember
* [svn-r21444] Snapshot version 1.8 release 8 (snap16)HDF Tester2011-10-031-3/+3
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* [svn-r21418] Change windows default driver to SEC2Allen Byrne2011-09-261-1/+1
| | | | Add option to allow -fPIC
* [svn-r21416] Snapshot version 1.8 release 8 (snap15)HDF Tester2011-09-261-3/+3
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* [svn-r21399] Snapshot version 1.8 release 8 (snap14)HDF Tester2011-09-191-3/+3
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* [svn-r21376] JIRA-HDFFV-2748: Relplace WIN32 macros in source. New ↵Allen Byrne2011-09-121-0/+6
| | | | | | | | H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines only need to be set on windows. Autotools configure is not affected. Trunk passed for a week and cmake branch has been in place > 3 weeks. Tested: local linux
* [svn-r21375] Snapshot version 1.8 release 8 (snap13)HDF Tester2011-09-121-3/+3
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* [svn-r21368] Purpose:Jonathan Kim2011-09-061-0/+11
| | | | | | | | | | | HDFFV-7712 - h5diff: segfault over combinations of complex container types (compound, array, vlen) Description: - Fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) - Merged from HDF5 trunk r21358. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21361] Snapshot version 1.8 release 8 (snap12)HDF Tester2011-09-051-3/+3
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* [svn-r21330] Snapshot version 1.8 release 8 (snap11)HDF Tester2011-08-291-3/+3
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* [svn-r21276] Snapshot version 1.8 release 8 (snap10)HDF Tester2011-08-221-3/+3
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* [svn-r21239] Description:Jonathan Kim2011-08-171-0/+10
| | | | | | | | | Merged from HDF5 trunk r21237. Add test cases for HDFFV-7656 - "--delta=something" considers two NaN of the same type are different. The fix was added (r21105) before but test cases were incorrectly added and missing for cmake script. Tested: jam (linux32-LE), koala (linux64-LE), tejeda (mac32-LE), cmake (jam)
* [svn-r21226] Snapshot version 1.8 release 8 (snap9)HDF Tester2011-08-151-3/+3
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* [svn-r21186] Snapshot version 1.8 release 8 (snap8)HDF Tester2011-08-081-3/+3
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* [svn-r21159] Snapshot version 1.8 release 8 (snap7)HDF Tester2011-08-011-3/+3
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* [svn-r21150] Snapshot version 1.8 release 8 (snap6)HDF Tester2011-07-251-3/+3
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* [svn-r21092] Needed to remove the "echo Expected Results" section due to ↵Allen Byrne2011-07-114-84/+68
| | | | removal from reference files
* [svn-r21077] Purpose:Jonathan Kim2011-07-081-4/+30
| | | | | | | | | | | | | Work for HDFFV-7600 - GMQS: h5diff - argument options -d, -p and --use-system-epsilon should be mutually exclusive. Description: Merge from HDF5 trunk r21072. Fixed h5diff to display instructive error message and exit with 1 when mutually exclusive options (-d, -p and --use-system-epsilon) are used together. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21065] Snapshot version 1.8 release 8 (snap5)HDF Tester2011-07-041-3/+3
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* [svn-r21054] Synchronize windows project files with trunkAllen Byrne2011-06-3014-876/+66
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* [svn-r21044] Purpose:Mike McGreevy2011-06-281-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-7592 "Remove PACKEDBITS option from autotools files" Description: The code for h5dump's packed bits feature was conditionally compiled in via this option during its 'beta' release in 1.8.5. Now that the feature is fully supported, h5dump has since been changed to always compile the packed bits code (having removed the #ifdef H5_HAVE_H5DUMP_PACKED_BITS checks), so this option in configure is no longer needed. This commit removes the --enable-h5dump-packed-bits configure option, including the help summary from './configure --help' and the libhdf5.settings output summary, the PACKED_BITS Makefile variable, and the definition of H5_HAVE_H5DUMP_PACKED_BITS define in appropriate pubconf header files (which has already been removed from use in source code as of r20722). Note that this option was never added to the trunk, thus this commit only need occur on the 1.8 branch. Tested: - Configure output, help, & summary verified on jam - h5committested
* [svn-r21035] Snapshot version 1.8 release 8 (snap4)HDF Tester2011-06-271-3/+3
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* [svn-r21001] Snapshot version 1.8 release 8 (snap3)HDF Tester2011-06-201-3/+3
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* [svn-r20932] Snapshot version 1.8 release 8 (snap2)HDF Tester2011-06-061-3/+3
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* [svn-r20924] Snapshot version 1.8 release 8 (snap1)HDF Tester2011-05-301-3/+3
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* [svn-r20904] Bring r20871, 20875, 20901, 20903 from trunk.Allen Byrne2011-05-251-107/+88
| | | | Tested: local linux
* [svn-r20889] Snapshot version 1.8 release 8 (snap1)HDF Tester2011-05-231-3/+3
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* [svn-r20706] Purpose:Jonathan Kim2011-05-021-6/+6
| | | | | | | | | | | | | | | | | - HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Merged from HDF5 trunk r20676. Fixed: 1) adding h5tools_is_obj_same() function to check if two given IDs or paths point to the same object. This function can be very useful for other tools and applications. 2) using h5tools_is_obj_same() at h5diff() and diff() in h5diff.c. If two paths point to the same object, there is no need to check the details of the object since we know there is no difference. The fix will increase the performance by skipping the content comparison. It also fixed the problem of reporting difference for some cases of comparing the same file, e.g. empty files or files with incomparable objects the same file. Test update: Updat prvious test cases (171, 172, 530) affected by this fix, so they still perfrom originally intended testing without bypassing. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20565] Update 1.8 branch version to 1.8.8-snap0Mike McGreevy2011-04-201-3/+3
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* [svn-r20500] Merge of 20499 from trunk to fix Windows H5_HAVE_GETTIMEOFDAY ↵Dana Robinson2011-04-141-3/+3
| | | | | | issues (HDFFV-5931). Tested on: Windows
* [svn-r20369] Purpose:Jonathan Kim2011-03-291-2/+12
| | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20299] Purpose:Jonathan Kim2011-03-231-0/+48
| | | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20294 Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. Also didn't display useful information about attribute difference. This fix covers all other cases. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20279] Description:Jonathan Kim2011-03-181-2/+2
| | | | | | | | | | Merged from HDF5 trunk r20254. In test script, h5ls is used to verify for the result, so change the two tests like others. This is related to the previous checkin SVN r18400. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20263] Merge in lahey project files.Allen Byrne2011-03-16228-12973/+5411
| | | | Tested: windows
* [svn-r20193] Snapshot version 1.8 release 7 (snap1)Larry Knox2011-03-071-3/+3
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* [svn-r20142] Remove duplicated project filesAllen Byrne2011-02-222-866/+0
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* [svn-r20139] Add new efc files and projects to windowsAllen Byrne2011-02-222-0/+866
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* [svn-r20137] Correct hl/fortran/src INCLUDE_DIRECTORIES.Allen Byrne2011-02-224-0/+874
| | | | Add new efc files and projects to windows
* [svn-r20133] Purpose:Jonathan Kim2011-02-211-0/+1
| | | | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: Merged from HDF5 trunk r20108 and r20132. h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20081] Update USING file for changes to examples batch files and added ↵Allen Byrne2011-02-116-93/+40
| | | | missing instructions.
* [svn-r19992] Purpose:Jonathan Kim2011-01-251-0/+3
| | | | | | | | h5dump: add dangling external link test case as part of Chicago project. Merged from hdf5 trunk r19971. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), linew (solaris-BE)
* [svn-r19935] Add new packed bits tests to legacy test scriptAllen Byrne2011-01-101-31/+75
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* [svn-r19752] Purpose:Jonathan Kim2010-11-091-0/+3
| | | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Merged from hdf5 trunk r19751. Tested: jam (linux32-LE), amani (linux64-LE)
* [svn-r19713] Purpose:Jonathan Kim2010-11-021-0/+8
| | | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Merged from hdf5 trunk r19712. Tested: jam (linux32-LE), heiwa (linuxppc64-BE)
* [svn-r19627] Remove syntax error mistakenly added in from previous checkin.Jonathan Kim2010-10-181-1/+1
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