From 6787a5bbef0e69aacadc9182f773ffc8a6d12127 Mon Sep 17 00:00:00 2001
From: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date: Thu, 18 May 2023 13:07:19 -0500
Subject: Hdf5 1 12 dt action (#2965)

---
 .github/workflows/cmake-ctest.yml | 217 ++++++++++++++++++++++++++++++++++++++
 .github/workflows/daily-build.yml |  28 +++++
 .github/workflows/tarball.yml     | 105 ++++++++++++++++++
 config/toolchain/aarch64.cmake    |   8 +-
 4 files changed, 354 insertions(+), 4 deletions(-)
 create mode 100644 .github/workflows/cmake-ctest.yml
 create mode 100644 .github/workflows/daily-build.yml
 create mode 100644 .github/workflows/tarball.yml

diff --git a/.github/workflows/cmake-ctest.yml b/.github/workflows/cmake-ctest.yml
new file mode 100644
index 0000000..365039e
--- /dev/null
+++ b/.github/workflows/cmake-ctest.yml
@@ -0,0 +1,217 @@
+name: hdf5 1.12 ctest runs
+
+# Controls when the action will run. Triggers the workflow on a schedule
+on:
+  workflow_call:
+    inputs:
+      file_base:
+        description: "The common base name of the source tarballs"
+        required: true
+        type: string
+
+# A workflow run is made up of one or more jobs that can run sequentially or
+# in parallel
+jobs:
+  build_and_test_win:
+  # Windows w/ MSVC + CMake
+  #
+    name: "Windows MSVC CTest"
+    runs-on: windows-latest
+    steps:
+      - name: Install Dependencies (Windows)
+        run: choco install ninja
+
+      - name: Enable Developer Command Prompt
+        uses: ilammy/msvc-dev-cmd@v1.12.1
+
+      - name: Set file base name (Windows)
+        id: set-file-base
+        run: |
+          FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
+          echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
+        shell: bash
+
+      # Get files created by release script
+      - name: Get zip-tarball (Windows)
+        uses: actions/download-artifact@v3
+        with:
+              name: zip-tarball
+              path: ${{ github.workspace }}
+
+      - name: using powershell
+        shell: pwsh
+        run: Get-Location
+
+      - name: List files for the space (Windows)
+        run: |
+              Get-ChildItem -Path ${{ github.workspace }}
+              Get-ChildItem -Path ${{ runner.workspace }}
+        shell: pwsh
+
+      - name: Uncompress source (Windows)
+        working-directory: ${{ github.workspace }}
+        run: 7z x ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
+        shell: bash
+
+      - name: Run ctest (Windows)
+        run: |
+          cd "${{ runner.workspace }}/hdf5/hdfsrc"
+          cmake --workflow --preset=ci-StdShar-MSVC --fresh
+        shell: bash
+
+      - name: Publish binary (Windows)
+        id: publish-ctest-binary
+        run: |
+          mkdir "${{ runner.workspace }}/build"
+          mkdir "${{ runner.workspace }}/build/hdf5"
+          Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING -Destination ${{ runner.workspace }}/build/hdf5/
+          Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 -Destination ${{ runner.workspace }}/build/hdf5/
+          Copy-Item -Path ${{ runner.workspace }}/hdf5/hdfsrc/README.md -Destination ${{ runner.workspace }}/build/hdf5/
+          Copy-Item -Path ${{ runner.workspace }}/hdf5/build/ci-StdShar-MSVC/* -Destination ${{ runner.workspace }}/build/hdf5/ -Include *.zip
+          cd "${{ runner.workspace }}/build"
+          7z a -tzip ${{ steps.set-file-base.outputs.FILE_BASE }}-win_vs2022.zip hdf5
+        shell: pwsh
+
+      - name: List files in the space (Windows)
+        run: |
+              Get-ChildItem -Path ${{ github.workspace }}
+              Get-ChildItem -Path ${{ runner.workspace }}
+        shell: pwsh
+
+      # Save files created by ctest script
+      - name: Save published binary (Windows)
+        uses: actions/upload-artifact@v3
+        with:
+              name: zip-vs2022-binary
+              path: ${{ runner.workspace }}/build/${{ steps.set-file-base.outputs.FILE_BASE }}-win_vs2022.zip
+              if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+  build_and_test_linux:
+  # Linux (Ubuntu) w/ gcc + CMake
+  #
+    name: "Ubuntu gcc CMake"
+    runs-on: ubuntu-latest
+    steps:
+      - name: Install CMake Dependencies (Linux)
+        run: sudo apt-get install ninja-build
+
+      - name: Set file base name (Linux)
+        id: set-file-base
+        run: |
+          FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
+          echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
+
+      # Get files created by release script
+      - name: Get tgz-tarball (Linux)
+        uses: actions/download-artifact@v3
+        with:
+              name: tgz-tarball
+              path: ${{ github.workspace }}
+
+      - name: List files for the space (Linux)
+        run: |
+              ls ${{ github.workspace }}
+              ls ${{ runner.workspace }}
+
+      - name: Uncompress source (Linux)
+        run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
+
+      - name: Run ctest (Linux)
+        run: |
+          cd "${{ runner.workspace }}/hdf5/hdfsrc"
+          cmake --workflow --preset=ci-StdShar-GNUC --fresh
+        shell: bash
+
+      - name: Publish binary (Linux)
+        id: publish-ctest-binary
+        run: |
+          mkdir "${{ runner.workspace }}/build"
+          mkdir "${{ runner.workspace }}/build/hdf5"
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/build/ci-StdShar-GNUC/*.tar.gz ${{ runner.workspace }}/build/hdf5
+          cd "${{ runner.workspace }}/build"
+          tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204.tar.gz hdf5
+        shell: bash
+
+      - name: List files in the space (Linux)
+        run: |
+              ls ${{ github.workspace }}
+              ls ${{ runner.workspace }}
+
+      # Save files created by ctest script
+      - name: Save published binary (Linux)
+        uses: actions/upload-artifact@v3
+        with:
+              name: tgz-ubuntu-2204-binary
+              path: ${{ runner.workspace }}/build/${{ steps.set-file-base.outputs.FILE_BASE }}-ubuntu-2204.tar.gz
+              if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+  build_and_test_mac:
+  # MacOS w/ Clang + CMake
+  #
+    name: "MacOS Clang CMake"
+    runs-on: macos-11
+    steps:
+      - name: Install Dependencies (MacOS)
+        run: brew install ninja
+
+      - name: Set file base name (MacOS)
+        id: set-file-base
+        run: |
+          FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
+          echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
+
+      # Get files created by release script
+      - name: Get tgz-tarball (MacOS)
+        uses: actions/download-artifact@v3
+        with:
+              name: tgz-tarball
+              path: ${{ github.workspace }}
+
+      - name: List files for the space (MacOS)
+        run: |
+              ls ${{ github.workspace }}
+              ls ${{ runner.workspace }}
+
+      - name: Uncompress source (MacOS)
+        run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
+
+      # symlinks the compiler executables to a common location 
+      - name: Setup GNU Fortran
+        uses: modflowpy/install-gfortran-action@v1
+  
+      - name: Run ctest (MacOS)
+        id: run-ctest
+        run: |
+          cd "${{ runner.workspace }}/hdf5/hdfsrc"
+          cmake --workflow --preset=ci-StdShar-Clang --fresh
+        shell: bash
+
+      - name: Publish binary (MacOS)
+        id: publish-ctest-binary
+        run: |
+          mkdir "${{ runner.workspace }}/build"
+          mkdir "${{ runner.workspace }}/build/hdf5"
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/COPYING_LBNL_HDF5 ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/hdfsrc/README.md ${{ runner.workspace }}/build/hdf5
+          cp ${{ runner.workspace }}/hdf5/build/ci-StdShar-Clang/*.tar.gz ${{ runner.workspace }}/build/hdf5
+          cd "${{ runner.workspace }}/build"
+          tar -zcvf ${{ steps.set-file-base.outputs.FILE_BASE }}-osx12.tar.gz hdf5
+        shell: bash
+
+      - name: List files in the space (MacOS)
+        run: |
+              ls ${{ github.workspace }}
+              ls ${{ runner.workspace }}
+
+      # Save files created by ctest script
+      - name: Save published binary (MacOS)
+        uses: actions/upload-artifact@v3
+        with:
+              name: tgz-osx12-binary
+              path: ${{ runner.workspace }}/build/${{ steps.set-file-base.outputs.FILE_BASE }}-osx12.tar.gz
+              if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
diff --git a/.github/workflows/daily-build.yml b/.github/workflows/daily-build.yml
new file mode 100644
index 0000000..63b7dab
--- /dev/null
+++ b/.github/workflows/daily-build.yml
@@ -0,0 +1,28 @@
+name: hdf5 1.12 daily build
+
+# Controls when the action will run. Triggers the workflow on a schedule
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: "8 0 * * *"
+
+# A workflow run is made up of one or more jobs that can run sequentially or
+# in parallel.
+jobs:
+  call-workflow-tarball:
+    uses: ./.github/workflows/tarball.yml
+
+  call-workflow-ctest:
+    needs: call-workflow-tarball
+    uses: ./.github/workflows/cmake-ctest.yml
+    with:
+      file_base: ${{ needs.call-workflow-tarball.outputs.file_base }}
+    if: ${{ needs.call-workflow-tarball.outputs.has_changes == 'true' }}
+
+  call-workflow-release:
+    needs: call-workflow-ctest
+    uses: ./.github/workflows/release.yml
+    with:
+      file_base: ${{ needs.call-workflow-tarball.outputs.file_base }}
+    if: ${{ needs.call-workflow-tarball.outputs.has_changes == 'true' }}
+
diff --git a/.github/workflows/tarball.yml b/.github/workflows/tarball.yml
new file mode 100644
index 0000000..62fd270
--- /dev/null
+++ b/.github/workflows/tarball.yml
@@ -0,0 +1,105 @@
+name: hdf5 1.12 tarball
+
+# Controls when the action will run. Triggers the workflow on a schedule
+on:
+  workflow_call:
+    outputs:
+      has_changes:
+        description: "Whether there were changes the previous day"
+        value: ${{ jobs.check_commits.outputs.has_changes }}
+      file_base:
+        description: "The common base name of the source tarballs"
+        value: ${{ jobs.create_tarball.outputs.file_base }}
+
+# A workflow run is made up of one or more jobs that can run sequentially or
+# in parallel
+jobs:
+  check_commits:
+    name: Check for recent commits
+    runs-on: ubuntu-latest
+    outputs:
+      has_changes: ${{ steps.check-new-commits.outputs.has-new-commits }}
+      branch_ref: ${{ steps.get-branch-name.outputs.BRANCH_REF }}
+      branch_sha: ${{ steps.get-branch-sha.outputs.BRANCH_SHA }}
+    steps:
+    - name: Get branch name
+      id: get-branch-name
+      env:
+        GITHUB_REF: ${{ github.ref }}
+        GITHUB_REF_NAME: ${{ github.ref_name }}
+        GITHUB_HEAD_REF: ${{ github.head_ref }}
+      #run: echo "${{ env.GITHUB_REF_NAME }} | grep -P '[0-9]+/merge' &> /dev/null && BRANCH_REF=${{ env.GITHUB_HEAD_REF }} || BRANCH_REF=${{ env.GITHUB_REF_NAME }}" >> $GITHUB_OUTPUT
+      run: echo "BRANCH_REF=${{ env.GITHUB_HEAD_REF || env.GITHUB_REF_NAME }}" >> $GITHUB_OUTPUT
+
+    - name: Get branch sha
+      id: get-branch-sha
+      env:
+        GITHUB_SHA: ${{ github.sha }}
+        GITHUB_WF_SHA: ${{ github.workflow_sha }}
+      run: |
+        SHORT_SHA=$(echo "${{ env.GITHUB_WF_SHA }}" | cut -c1-7)
+        echo "BRANCH_SHA=$SHORT_SHA" >> $GITHUB_OUTPUT
+
+    - name: Check for changed source
+      id: check-new-commits
+      uses: adriangl/check-new-commits-action@v1
+      with:
+        seconds: 86400 # One day in seconds
+        branch: '${{ steps.get-branch-name.outputs.branch_ref }}'
+
+    - run: echo "You have ${{ steps.check-new-commits.outputs.new-commits-number }} new commit(s) in ${{ steps.get-branch-name.outputs.BRANCH_REF }} ✅!"
+      if: ${{ steps.check-new-commits.outputs.has-new-commits == 'true' }}
+
+    - run: echo "Short commit sha is ${{ steps.get-branch-sha.outputs.BRANCH_SHA }}!"
+
+  create_tarball:
+    name: Create a source tarball
+    runs-on: ubuntu-latest
+    needs: check_commits
+    if: ${{ needs.check_commits.outputs.has_changes == 'true' }}
+    outputs:
+      file_base: ${{ steps.set-file-base.outputs.FILE_BASE }}
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - name: Get Sources
+        uses: actions/checkout@v3
+        with:
+          path: hdfsrc
+
+      - name: Install Autotools Dependencies (Linux, serial)
+        run: |
+             sudo apt update
+             sudo apt install automake autoconf libtool libtool-bin gzip dos2unix
+
+      - name: Set file base name
+        id: set-file-base
+        run: |
+          FILE_NAME_BASE=$(echo "hdf5-${{ needs.check_commits.outputs.branch_ref }}-${{ needs.check_commits.outputs.branch_sha }}")
+          echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
+
+      - name: Run release script
+        id: run-release-script
+        run: |
+          cd "$GITHUB_WORKSPACE/hdfsrc"
+          bin/bbrelease -d $GITHUB_WORKSPACE --branch ${{ needs.check_commits.outputs.branch_ref }} --revision gzip zip
+        shell: bash
+
+      - name: List files in the repository
+        run: |
+              ls ${{ github.workspace }}
+              ls $GITHUB_WORKSPACE
+
+      # Save files created by release script
+      - name: Save tgz-tarball
+        uses: actions/upload-artifact@v3
+        with:
+              name: tgz-tarball
+              path: ${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
+              if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
+
+      - name: Save zip-tarball
+        uses: actions/upload-artifact@v3
+        with:
+              name: zip-tarball
+              path: ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
+              if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
diff --git a/config/toolchain/aarch64.cmake b/config/toolchain/aarch64.cmake
index 6996833..fd216a9 100644
--- a/config/toolchain/aarch64.cmake
+++ b/config/toolchain/aarch64.cmake
@@ -1,7 +1,7 @@
 set(TOOLCHAIN_PREFIX aarch64-linux-gnu)
-set(ANDROID_NDK /opt/android-ndk-linux)
-set (CMAKE_SYSTEM_NAME Android)
-set (CMAKE_ANDROID_ARCH_ABI x86_64)
+set(CMAKE_SYSTEM_NAME Linux)
+set(CMAKE_SYSTEM_PROCESSOR aarch64)
+#set (CMAKE_ANDROID_ARCH_ABI x86_64)
 #set (CMAKE_ANDROID_STANDALONE_TOOLCHAIN ${ANDROID_NDK}/build/cmake/android.toolchain.cmake)
 set (CMAKE_C_COMPILER ${TOOLCHAIN_PREFIX}-gcc)
 set (CMAKE_CXX_COMPILER ${TOOLCHAIN_PREFIX}-g++)
@@ -12,7 +12,7 @@ set (CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)
 set (CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)
 set (CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)
 set (CMAKE_FIND_ROOT_PATH_MODE_PACKAGE ONLY)
-set (CMAKE_CROSSCOMPILING_EMULATOR qemu-aarch64)
+set(CMAKE_CROSSCOMPILING_EMULATOR "qemu-aarch64-static;-L;/usr/aarch64-linux-gnu/" CACHE FILEPATH "Path to the emulator for the target system.")
 
 include_directories(/usr/${TOOLCHAIN_PREFIX}/include)
 
-- 
cgit v0.12