From 98b8fa7469345ec024acd9c4ee192fd60015b9e3 Mon Sep 17 00:00:00 2001 From: jhendersonHDF Date: Fri, 18 Aug 2023 15:59:25 -0500 Subject: Fix assertion failure during file close on error (#3387) --- release_docs/RELEASE.txt | 11 +++++++++++ src/H5C.c | 2 +- testpar/t_file.c | 51 ++++++++++++++++++++++++++++++++++++++++++++++++ testpar/testphdf5.c | 3 +++ testpar/testphdf5.h | 1 + 5 files changed, 67 insertions(+), 1 deletion(-) diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 36c8865..a0a0985 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -283,6 +283,17 @@ Bug Fixes since HDF5-1.14.0 release =================================== Library ------- + - Fixed an assertion failure in Parallel HDF5 when a file can't be created + due to an invalid library version bounds setting + + An assertion failure could occur in H5MF_settle_raw_data_fsm when a file + can't be created with Parallel HDF5 due to specifying the use of a paged, + persistent file free space manager + (H5Pset_file_space_strategy(..., H5F_FSPACE_STRATEGY_PAGE, 1, ...)) with + an invalid library version bounds combination + (H5Pset_libver_bounds(..., H5F_LIBVER_EARLIEST, H5F_LIBVER_V18)). This + has now been fixed. + - Fixed bugs in selection I/O Previously, the library could fail in some cases when performing selection diff --git a/src/H5C.c b/src/H5C.c index 545154c..24dd800 100644 --- a/src/H5C.c +++ b/src/H5C.c @@ -416,7 +416,7 @@ H5C_prep_for_file_close(H5F_t *f) #ifdef H5_HAVE_PARALLEL if ((H5F_INTENT(f) & H5F_ACC_RDWR) && !image_generated && cache_ptr->aux_ptr != NULL && - f->shared->fs_persist) { + f->shared->sblock && f->shared->fs_persist) { /* If persistent free space managers are enabled, flushing the * metadata cache may result in the deletion, insertion, and/or * dirtying of entries. diff --git a/testpar/t_file.c b/testpar/t_file.c index 314a60c..9338344 100644 --- a/testpar/t_file.c +++ b/testpar/t_file.c @@ -1009,3 +1009,54 @@ test_delete(void) VRFY((SUCCEED == ret), "H5Pclose"); } /* end test_delete() */ + +/* + * Tests for an assertion failure during file close that used + * to occur when the library fails to create a file in parallel + * due to an invalid library version bounds setting + */ +void +test_invalid_libver_bounds_file_close_assert(void) +{ + const char *filename = NULL; + MPI_Comm comm = MPI_COMM_WORLD; + MPI_Info info = MPI_INFO_NULL; + herr_t ret; + hid_t fid = H5I_INVALID_HID; + hid_t fapl_id = H5I_INVALID_HID; + hid_t fcpl_id = H5I_INVALID_HID; + + filename = (const char *)GetTestParameters(); + + /* set up MPI parameters */ + MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); + MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); + + /* setup file access plist */ + fapl_id = H5Pcreate(H5P_FILE_ACCESS); + VRFY((fapl_id != H5I_INVALID_HID), "H5Pcreate"); + ret = H5Pset_fapl_mpio(fapl_id, comm, info); + VRFY((SUCCEED == ret), "H5Pset_fapl_mpio"); + ret = H5Pset_libver_bounds(fapl_id, H5F_LIBVER_EARLIEST, H5F_LIBVER_V18); + VRFY((SUCCEED == ret), "H5Pset_libver_bounds"); + + /* setup file creation plist */ + fcpl_id = H5Pcreate(H5P_FILE_CREATE); + VRFY((fcpl_id != H5I_INVALID_HID), "H5Pcreate"); + + ret = H5Pset_file_space_strategy(fcpl_id, H5F_FSPACE_STRATEGY_PAGE, TRUE, 1); + VRFY((SUCCEED == ret), "H5Pset_file_space_strategy"); + + /* create the file */ + H5E_BEGIN_TRY + { + fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_id, fapl_id); + } + H5E_END_TRY + VRFY((fid == H5I_INVALID_HID), "H5Fcreate"); + + ret = H5Pclose(fapl_id); + VRFY((SUCCEED == ret), "H5Pclose"); + ret = H5Pclose(fcpl_id); + VRFY((SUCCEED == ret), "H5Pclose"); +} diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c index a389d0c..1cca1fd 100644 --- a/testpar/testphdf5.c +++ b/testpar/testphdf5.c @@ -359,6 +359,9 @@ main(int argc, char **argv) AddTest("delete", test_delete, NULL, "MPI-IO VFD file delete", PARATESTFILE); + AddTest("invlibverassert", test_invalid_libver_bounds_file_close_assert, NULL, + "Invalid libver bounds assertion failure", PARATESTFILE); + AddTest("idsetw", dataset_writeInd, NULL, "dataset independent write", PARATESTFILE); AddTest("idsetr", dataset_readInd, NULL, "dataset independent read", PARATESTFILE); diff --git a/testpar/testphdf5.h b/testpar/testphdf5.h index 2a21ee6..820fdc3 100644 --- a/testpar/testphdf5.h +++ b/testpar/testphdf5.h @@ -232,6 +232,7 @@ void external_links(void); void zero_dim_dset(void); void test_file_properties(void); void test_delete(void); +void test_invalid_libver_bounds_file_close_assert(void); void multiple_dset_write(void); void multiple_group_write(void); void multiple_group_read(void); -- cgit v0.12