From 1b22cc435e999e7f1415f17b4408e2fa16bc73a5 Mon Sep 17 00:00:00 2001 From: Binh-Minh Ribler Date: Fri, 20 Sep 2013 13:53:21 -0500 Subject: [svn-r24178] Back out the changes that cause daily test to fail r24163 --- c++/src/H5Attribute.cpp | 1 - c++/src/H5CommonFG.cpp | 131 +++++++++++ c++/src/H5CommonFG.h | 12 + c++/src/H5DataSet.cpp | 48 +++- c++/src/H5DataSet.h | 8 +- c++/src/H5DataSpace.cpp | 2 +- c++/src/H5DataType.cpp | 13 +- c++/src/H5DataType.h | 8 +- c++/src/H5File.h | 3 + c++/src/H5Group.cpp | 17 +- c++/src/H5Group.h | 10 +- c++/src/H5IdComponent.cpp | 2 +- c++/src/H5Location.cpp | 420 +++++++++++------------------------ c++/src/H5Location.h | 51 ++--- c++/src/H5Object.cpp | 1 + c++/src/H5PropList.cpp | 5 +- c++/test/trefer.cpp | 548 ++-------------------------------------------- 17 files changed, 375 insertions(+), 905 deletions(-) diff --git a/c++/src/H5Attribute.cpp b/c++/src/H5Attribute.cpp index a98a970..d684b8f 100644 --- a/c++/src/H5Attribute.cpp +++ b/c++/src/H5Attribute.cpp @@ -44,7 +44,6 @@ namespace H5 { #endif // H5_NO_STD #endif -class H5_DLLCPP H5Object; // forward declaration for UserData4Aiterate //-------------------------------------------------------------------------- // Function: Attribute default constructor ///\brief Default constructor: Creates a stub attribute diff --git a/c++/src/H5CommonFG.cpp b/c++/src/H5CommonFG.cpp index 3bf4b4f..d6fe5dc 100644 --- a/c++/src/H5CommonFG.cpp +++ b/c++/src/H5CommonFG.cpp @@ -460,6 +460,137 @@ H5std_string CommonFG::getLinkval( const H5std_string& name, size_t size ) const } //-------------------------------------------------------------------------- +// Function: CommonFG::setComment +///\brief Sets or resets the comment for an object specified by its name. +///\param name - IN: Name of the object +///\param comment - IN: New comment +///\exception H5::FileIException or H5::GroupIException +///\par Description +/// If \a comment is an empty string or a null pointer, the comment +/// message is removed from the object. +/// Comments should be relatively short, null-terminated, ASCII +/// strings. They can be attached to any object that has an +/// object header, e.g., data sets, groups, named data types, +/// and data spaces, but not symbolic links. +// Programmer Binh-Minh Ribler - 2000 +// Modification +// 2007: QAK modified to use H5O APIs; however the first parameter is +// no longer just file or group, this function should be moved +// to another class to accommodate attribute, dataset, and named +// datatype. - BMR +//-------------------------------------------------------------------------- +void CommonFG::setComment( const char* name, const char* comment ) const +{ + herr_t ret_value = H5Oset_comment_by_name( getLocId(), name, comment, H5P_DEFAULT ); + if( ret_value < 0 ) + throwException("setComment", "H5Oset_comment_by_name failed"); +} + +//-------------------------------------------------------------------------- +// Function: CommonFG::setComment +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name and \a comment. +// Programmer Binh-Minh Ribler - 2000 +//-------------------------------------------------------------------------- +void CommonFG::setComment( const H5std_string& name, const H5std_string& comment ) const +{ + setComment( name.c_str(), comment.c_str() ); +} + +//-------------------------------------------------------------------------- +// Function: CommonFG::removeComment +///\brief Removes the comment from an object specified by its name. +///\param name - IN: Name of the object +///\exception H5::FileIException or H5::GroupIException +// Programmer Binh-Minh Ribler - May 2005 +// 2007: QAK modified to use H5O APIs; however the first parameter is +// no longer just file or group, this function should be moved +// to another class to accommodate attribute, dataset, and named +// datatype. - BMR +//-------------------------------------------------------------------------- +void CommonFG::removeComment(const char* name) const +{ + herr_t ret_value = H5Oset_comment_by_name(getLocId(), name, NULL, H5P_DEFAULT); + if( ret_value < 0 ) + throwException("removeComment", "H5Oset_comment_by_name failed"); +} + +//-------------------------------------------------------------------------- +// Function: CommonFG::removeComment +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name. +// Programmer Binh-Minh Ribler - May 2005 +//-------------------------------------------------------------------------- +void CommonFG::removeComment(const H5std_string& name) const +{ + removeComment (name.c_str()); +} + +//-------------------------------------------------------------------------- +// Function: CommonFG::getComment +///\brief Retrieves comment for the specified object and its comment's +/// length. +///\param name - IN: Name of the object +///\param bufsize - IN: Length of the comment to retrieve +///\return Comment string +///\exception H5::FileIException or H5::GroupIException +// Programmer Binh-Minh Ribler - 2000 +// 2007: QAK modified to use H5O APIs; however the first parameter is +// no longer just file or group, this function should be moved +// to another class to accommodate attribute, dataset, and named +// datatype. - BMR +//-------------------------------------------------------------------------- +H5std_string CommonFG::getComment( const char* name, size_t bufsize ) const +{ + // bufsize is default to 256 + // temporary variable + hid_t loc_id = getLocId(); // temporary variable + + // temporary C-string for the object's comment; bufsize already including + // null character + char* comment_C = new char[bufsize]; + ssize_t ret_value = H5Oget_comment_by_name(loc_id, name, comment_C, bufsize, H5P_DEFAULT); + + // if the actual length of the comment is longer than bufsize and bufsize + // was the default value, i.e., not given by the user, then call + // H5Oget_comment_by_name again with the correct value. + // If the call to H5Oget_comment_by_name returned an error, skip this block + // and throw an exception below. + if (ret_value >= 0 && (size_t)ret_value > bufsize && bufsize == 256) + { + size_t new_size = ret_value; + delete []comment_C; + comment_C = new char[new_size]; // new_size including null terminator + ret_value = H5Oget_comment_by_name(loc_id, name, comment_C, new_size, H5P_DEFAULT); + } + + // if H5Oget_comment_by_name returns SUCCEED, return the string comment, + // otherwise, throw an exception + if( ret_value < 0 ) { + delete []comment_C; + throwException("getComment", "H5Oget_comment_by_name failed"); + } + + H5std_string comment = H5std_string(comment_C); + delete []comment_C; + return (comment); +} + +//-------------------------------------------------------------------------- +// Function: CommonFG::getComment +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name. +// Programmer Binh-Minh Ribler - 2000 +//-------------------------------------------------------------------------- +H5std_string CommonFG::getComment( const H5std_string& name, size_t bufsize ) const +{ + return( getComment( name.c_str(), bufsize )); +} + +//-------------------------------------------------------------------------- // Function: CommonFG::mount ///\brief Mounts the file \a child onto this group. ///\param name - IN: Name of the group diff --git a/c++/src/H5CommonFG.h b/c++/src/H5CommonFG.h index b02b05b..22e193a 100644 --- a/c++/src/H5CommonFG.h +++ b/c++/src/H5CommonFG.h @@ -49,6 +49,18 @@ class H5_DLLCPP CommonFG { DataSet openDataSet(const char* name) const; DataSet openDataSet(const H5std_string& name) const; + // Retrieves comment for the HDF5 object specified by its name. + H5std_string getComment(const char* name, size_t bufsize=256) const; + H5std_string getComment(const H5std_string& name, size_t bufsize=256) const; + + // Removes the comment for the HDF5 object specified by its name. + void removeComment(const char* name) const; + void removeComment(const H5std_string& name) const; + + // Sets the comment for an HDF5 object specified by its name. + void setComment(const char* name, const char* comment) const; + void setComment(const H5std_string& name, const H5std_string& comment) const; + // Returns the value of a symbolic link. H5std_string getLinkval(const char* link_name, size_t size=0) const; H5std_string getLinkval(const H5std_string& link_name, size_t size=0) const; diff --git a/c++/src/H5DataSet.cpp b/c++/src/H5DataSet.cpp index 1765ca9..3e3893c 100644 --- a/c++/src/H5DataSet.cpp +++ b/c++/src/H5DataSet.cpp @@ -79,29 +79,57 @@ DataSet::DataSet(const DataSet& original) : AbstractDs(original), H5Object(origi //-------------------------------------------------------------------------- // Function: DataSet overload constructor - dereference -///\brief Given a reference, ref, to an hdf5 location, creates a +///\brief Given a reference, ref, to an hdf5 dataset, creates a /// DataSet object -///\param loc - IN: Dataset reference object is in or location of +///\param obj - IN: Dataset reference object is in or location of /// object that the dataset is located within. ///\param ref - IN: Reference pointer ///\param ref_type - IN: Reference type - default to H5R_OBJECT ///\exception H5::DataSetIException ///\par Description -/// \c loc can be DataSet, Group, H5File, or named DataType, that +/// \c obj can be DataSet, Group, H5File, or named DataType, that /// is a datatype that has been named by DataType::commit. // Programmer Binh-Minh Ribler - Oct, 2006 // Modification // Jul, 2008 // Added for application convenience. //-------------------------------------------------------------------------- -DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : AbstractDs(), H5Object() +DataSet::DataSet(H5Object& obj, const void* ref, H5R_type_t ref_type) : AbstractDs(), H5Object() { - H5Location::dereference(loc, ref, ref_type, plist); + try { + id = p_dereference(obj.getId(), ref, ref_type); + } catch (ReferenceException deref_error) { + throw ReferenceException("DataSet constructor - located by object", + deref_error.getDetailMsg()); + } } //-------------------------------------------------------------------------- // Function: DataSet overload constructor - dereference -///\brief Given a reference, ref, to an hdf5 attribute, creates a +///\brief Given a reference, ref, to an hdf5 dataset, creates a +/// DataSet object +///\param h5file - IN: Location referenced object is in +///\param ref - IN: Reference pointer +///\param ref_type - IN: Reference type - default to H5R_OBJECT +///\exception H5::DataSetIException +// Programmer Binh-Minh Ribler - Oct, 2006 +// Modification +// Jul, 2008 +// Added for application convenience. +//-------------------------------------------------------------------------- +DataSet::DataSet(H5File& h5file, const void* ref, H5R_type_t ref_type) : AbstractDs(), H5Object() +{ + try { + id = p_dereference(h5file.getId(), ref, ref_type); + } catch (ReferenceException deref_error) { + throw ReferenceException("DataSet constructor - located by HDF5 file", + deref_error.getDetailMsg()); + } +} + +//-------------------------------------------------------------------------- +// Function: DataSet overload constructor - dereference +///\brief Given a reference, ref, to an hdf5 dataset, creates a /// DataSet object ///\param attr - IN: Specifying location where the referenced object is in ///\param ref - IN: Reference pointer @@ -112,12 +140,12 @@ DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, co // Jul, 2008 // Added for application convenience. //-------------------------------------------------------------------------- -DataSet::DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : AbstractDs(), H5Object() +DataSet::DataSet(Attribute& attr, const void* ref, H5R_type_t ref_type) : AbstractDs(), H5Object() { - try { - id = p_dereference(attr.getId(), ref, ref_type, plist); + try { + id = p_dereference(attr.getId(), ref, ref_type); } catch (ReferenceException deref_error) { - throw ReferenceException("DataSet constructor - by dereferenced", + throw ReferenceException("DataSet constructor - located by attribute", deref_error.getDetailMsg()); } } diff --git a/c++/src/H5DataSet.h b/c++/src/H5DataSet.h index e2fe702..bc80046 100644 --- a/c++/src/H5DataSet.h +++ b/c++/src/H5DataSet.h @@ -76,12 +76,16 @@ class H5_DLLCPP DataSet : public H5Object, public AbstractDs { // Iterates the selected elements in the specified dataspace - not implemented in C++ style yet int iterateElems( void* buf, const DataType& type, const DataSpace& space, H5D_operator_t op, void* op_data = NULL ); + // Retrieves a dataspace with the region pointed to selected. + DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; + ///\brief Returns this class name. virtual H5std_string fromClass () const { return("DataSet"); } // Creates a dataset by way of dereference. - DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); - DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); + DataSet(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + DataSet(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + DataSet(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT); // Default constructor. DataSet(); diff --git a/c++/src/H5DataSpace.cpp b/c++/src/H5DataSpace.cpp index 059c812..2e2bb35 100644 --- a/c++/src/H5DataSpace.cpp +++ b/c++/src/H5DataSpace.cpp @@ -446,7 +446,7 @@ void DataSpace::getSelectBounds ( hsize_t* start, hsize_t* end ) const } //-------------------------------------------------------------------------- -// Function: DataSpace::selectElements +// Function: DataSpace::H5Sselect_elements ///\brief Selects array elements to be included in the selection for /// this dataspace. ///\param op - IN: Operator specifying how the new selection is to be diff --git a/c++/src/H5DataType.cpp b/c++/src/H5DataType.cpp index 9e9433f..8a62471 100644 --- a/c++/src/H5DataType.cpp +++ b/c++/src/H5DataType.cpp @@ -100,7 +100,7 @@ DataType::DataType( const H5T_class_t type_class, size_t size ) : H5Object() // Jul, 2008 // Added for application convenience. //-------------------------------------------------------------------------- - /* DataType::DataType(H5Object& obj, const void* ref, H5R_type_t ref_type) : H5Object() +DataType::DataType(H5Object& obj, const void* ref, H5R_type_t ref_type) : H5Object() { try { id = p_dereference(obj.getId(), ref, ref_type); @@ -109,7 +109,6 @@ DataType::DataType( const H5T_class_t type_class, size_t size ) : H5Object() deref_error.getDetailMsg()); } } - */ //-------------------------------------------------------------------------- // Function: DataType overload constructor - dereference @@ -124,16 +123,14 @@ DataType::DataType( const H5T_class_t type_class, size_t size ) : H5Object() // Jul, 2008 // Added for application convenience. //-------------------------------------------------------------------------- -DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object() +DataType::DataType(H5File& h5file, const void* ref, H5R_type_t ref_type) : H5Object() { - H5Location::dereference(loc, ref, ref_type, plist); - /* try { + try { id = p_dereference(h5file.getId(), ref, ref_type); } catch (ReferenceException deref_error) { throw ReferenceException("DataType constructor - located by an H5File", deref_error.getDetailMsg()); } - */ } //-------------------------------------------------------------------------- @@ -149,10 +146,10 @@ DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, // Jul, 2008 // Added for application convenience. //-------------------------------------------------------------------------- -DataType::DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object() +DataType::DataType(Attribute& attr, const void* ref, H5R_type_t ref_type) : H5Object() { try { - id = p_dereference(attr.getId(), ref, ref_type, plist); + id = p_dereference(attr.getId(), ref, ref_type); } catch (ReferenceException deref_error) { throw ReferenceException("DataType constructor - located by an Attribute", deref_error.getDetailMsg()); diff --git a/c++/src/H5DataType.h b/c++/src/H5DataType.h index e4254b0..6e56622 100644 --- a/c++/src/H5DataType.h +++ b/c++/src/H5DataType.h @@ -30,8 +30,9 @@ class H5_DLLCPP DataType : public H5Object { DataType( const DataType& original ); // Creates a datatype by way of dereference. - DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); - DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); + DataType(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + DataType(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + DataType(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT); // Closes this datatype. virtual void close(); @@ -100,6 +101,9 @@ class H5_DLLCPP DataType : public H5Object { // Checks whether this datatype is a variable-length string. bool isVariableStr() const; + // Retrieves a dataspace with the region pointed to selected. + DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; + ///\brief Returns this class name. virtual H5std_string fromClass () const { return("DataType"); } diff --git a/c++/src/H5File.h b/c++/src/H5File.h index 2abffea..f906de6 100644 --- a/c++/src/H5File.h +++ b/c++/src/H5File.h @@ -61,6 +61,9 @@ class H5_DLLCPP H5File : public H5Location, public CommonFG { // and datatypes) in the same file. void getObjIDs(unsigned types, size_t max_objs, hid_t *oid_list) const; + // Retrieves a dataspace with the region pointed to selected. + DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; + // Returns the pointer to the file handle of the low-level file driver. void getVFDHandle(FileAccPropList& fapl, void **file_handle) const; void getVFDHandle(void **file_handle) const; diff --git a/c++/src/H5Group.cpp b/c++/src/H5Group.cpp index 3150025..eff7e50 100644 --- a/c++/src/H5Group.cpp +++ b/c++/src/H5Group.cpp @@ -99,18 +99,14 @@ Group::Group(const hid_t existing_id) : H5Object() /// is a datatype that has been named by DataType::commit. // Programmer Binh-Minh Ribler - Oct, 2006 //-------------------------------------------------------------------------- - /* Group::Group(H5Object& obj, const void* ref, H5R_type_t ref_type) : H5Object() - */ -Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object() +Group::Group(H5Object& obj, const void* ref, H5R_type_t ref_type) : H5Object() { - H5Location::dereference(loc, ref, ref_type, plist); - /* try { - id = p_dereference(loc.getId(), ref, ref_type); + try { + id = p_dereference(obj.getId(), ref, ref_type); } catch (ReferenceException deref_error) { throw ReferenceException("Group constructor - located by an H5Object", deref_error.getDetailMsg()); } - */ } //-------------------------------------------------------------------------- @@ -122,7 +118,7 @@ Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 //-------------------------------------------------------------------------- - /* Group::Group(H5File& h5file, const void* ref, H5R_type_t ref_type) : H5Object() +Group::Group(H5File& h5file, const void* ref, H5R_type_t ref_type) : H5Object() { try { id = p_dereference(h5file.getId(), ref, ref_type); @@ -131,7 +127,6 @@ Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const deref_error.getDetailMsg()); } } - */ //-------------------------------------------------------------------------- // Function: Group overload constructor - dereference @@ -142,10 +137,10 @@ Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 //-------------------------------------------------------------------------- -Group::Group(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object() +Group::Group(Attribute& attr, const void* ref, H5R_type_t ref_type) : H5Object() { try { - id = p_dereference(attr.getId(), ref, ref_type, plist); + id = p_dereference(attr.getId(), ref, ref_type); } catch (ReferenceException deref_error) { throw ReferenceException("Group constructor - located by an Attribute", deref_error.getDetailMsg()); diff --git a/c++/src/H5Group.h b/c++/src/H5Group.h index 4003c21..3b53293 100644 --- a/c++/src/H5Group.h +++ b/c++/src/H5Group.h @@ -26,6 +26,9 @@ class H5_DLLCPP Group : public H5Object, public CommonFG { // Close this group. virtual void close(); + // Retrieves a dataspace with the region pointed to selected. + DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; + ///\brief Returns this class name. virtual H5std_string fromClass () const { return("Group"); } @@ -36,10 +39,9 @@ class H5_DLLCPP Group : public H5Object, public CommonFG { virtual hid_t getLocId() const; // Creates a group by way of dereference. - Group(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); - /* Group(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT); - */ - Group(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); + Group(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + Group(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + Group(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT); // default constructor Group(); diff --git a/c++/src/H5IdComponent.cpp b/c++/src/H5IdComponent.cpp index f902116..4a997ab 100644 --- a/c++/src/H5IdComponent.cpp +++ b/c++/src/H5IdComponent.cpp @@ -269,7 +269,7 @@ IdComponent::IdComponent() {} // Description: // This function is protected so that the user applications can // only have access to its code via allowable classes, namely, -// Attribute and H5Location subclasses. +// H5File and H5Object subclasses. // Programmer Binh-Minh Ribler - Jul, 2004 //-------------------------------------------------------------------------- H5std_string IdComponent::p_get_file_name() const diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp index d4c97fa..fcf7ff4 100644 --- a/c++/src/H5Location.cpp +++ b/c++/src/H5Location.cpp @@ -55,17 +55,17 @@ extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name, } //-------------------------------------------------------------------------- -// Function: H5Location default constructor (protected) -// Programmer Binh-Minh Ribler - 2000 +// Function: H5Location default constructor (protected) +// Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Location::H5Location() : IdComponent(0) {} //-------------------------------------------------------------------------- -// Function: H5Location overloaded constructor (protected) -// Purpose Creates an H5Location object using the id of an existing HDF5 -// object. -// Parameters object_id - IN: Id of an existing HDF5 object -// Programmer Binh-Minh Ribler - 2000 +// Function: H5Location overloaded constructor (protected) +// Purpose Creates an H5Location object using the id of an existing HDF5 +// object. +// Parameters object_id - IN: Id of an existing HDF5 object +// Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Location::H5Location(const hid_t object_id) : IdComponent(object_id) {} @@ -78,30 +78,6 @@ H5Location::H5Location(const hid_t object_id) : IdComponent(object_id) {} //-------------------------------------------------------------------------- H5Location::H5Location( const H5Location& original ) : IdComponent( original ) {} -//-------------------------------------------------------------------------- -// Function: H5Location constructor -///\brief Dereferences into an HDF5 object, given an HDF5 location. -///\param loc - IN: H5Location instance to copy -///\param ref - IN: Name of the object to be referenced -///\param ref_type - IN: Dataspace with selection -// Programmer Binh-Minh Ribler - 2000 -//-------------------------------------------------------------------------- - // Dereferences into an HDF5 object, given an HDF5 location. - /* H5Location::H5Location(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) -{ - hid_t temp_id; - try { - temp_id = p_dereference(loc.getId(), ref, ref_type, plist); - } - catch (ReferenceException deref_error) { - throw ReferenceException("H5Location constructor - by dereferenced", - deref_error.getDetailMsg()); - } - setId(temp_id); -} - */ - - #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- @@ -366,7 +342,7 @@ void H5Location::renameAttr(const H5std_string& oldname, const H5std_string& new /// which can be either of these values: /// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file /// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file -///\exception H5::Exception +///\exception H5::FileIException ///\par Description /// This location is used to identify the file to be flushed. // Programmer Binh-Minh Ribler - 2012 @@ -379,7 +355,7 @@ void H5Location::flush(H5F_scope_t scope) const herr_t ret_value = H5Fflush(getId(), scope); if( ret_value < 0 ) { - throw Exception(inMemFunc("flush"), "H5Fflush failed"); + throw FileIException(inMemFunc("flush"), "H5Fflush failed"); } } @@ -400,147 +376,17 @@ H5std_string H5Location::getFileName() const } } -//-------------------------------------------------------------------------- -// Function: H5Location::setComment -///\brief Sets or resets the comment for an object specified by its name. -///\param name - IN: Name of the object -///\param comment - IN: New comment -///\exception H5::Exception -///\par Description -/// If \a comment is an empty string or a null pointer, the comment -/// message is removed from the object. -/// Comments should be relatively short, null-terminated, ASCII -/// strings. They can be attached to any object that has an -/// object header, e.g., data sets, groups, named data types, -/// and data spaces, but not symbolic links. -// Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) -// Modification -// 2007: QAK modified to use H5O APIs; however the first parameter is -// no longer just file or group, this function should be moved -// to another class to accommodate attribute, dataset, and named -// datatype. - BMR -//-------------------------------------------------------------------------- -void H5Location::setComment(const char* name, const char* comment) const -{ - herr_t ret_value = H5Oset_comment_by_name(getId(), name, comment, H5P_DEFAULT); - if( ret_value < 0 ) - throw Exception("setComment", "H5Oset_comment_by_name failed"); -} - -//-------------------------------------------------------------------------- -// Function: H5Location::setComment -///\brief This is an overloaded member function, provided for convenience. -/// It differs from the above function in that it takes an -/// \c H5std_string for \a name and \a comment. -// Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) -//-------------------------------------------------------------------------- -void H5Location::setComment(const H5std_string& name, const H5std_string& comment) const -{ - setComment(name.c_str(), comment.c_str()); -} - -//-------------------------------------------------------------------------- -// Function: H5Location::removeComment -///\brief Removes the comment from an object specified by its name. -///\param name - IN: Name of the object -///\exception H5::Exception -// Programmer Binh-Minh Ribler - May 2005 (moved from CommonFG, Sep 2013) -// 2007: QAK modified to use H5O APIs; however the first parameter is -// no longer just file or group, this function should be moved -// to another class to accommodate attribute, dataset, and named -// datatype. - BMR -//-------------------------------------------------------------------------- -void H5Location::removeComment(const char* name) const -{ - herr_t ret_value = H5Oset_comment_by_name(getId(), name, NULL, H5P_DEFAULT); - if( ret_value < 0 ) - throw Exception("removeComment", "H5Oset_comment_by_name failed"); -} - -//-------------------------------------------------------------------------- -// Function: H5Location::removeComment -///\brief This is an overloaded member function, provided for convenience. -/// It differs from the above function in that it takes an -/// \c H5std_string for \a name. -// Programmer Binh-Minh Ribler - May 2005 (moved from CommonFG, Sep 2013) -//-------------------------------------------------------------------------- -void H5Location::removeComment(const H5std_string& name) const -{ - removeComment (name.c_str()); -} - -//-------------------------------------------------------------------------- -// Function: H5Location::getComment -///\brief Retrieves comment for the specified object and its comment's -/// length. -///\param name - IN: Name of the object -///\param bufsize - IN: Length of the comment to retrieve -///\return Comment string -///\exception H5::Exception -// Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) -// 2007: QAK modified to use H5O APIs; however the first parameter is -// no longer just file or group, this function should be moved -// to another class to accommodate attribute, dataset, and named -// datatype. - BMR -//-------------------------------------------------------------------------- -H5std_string H5Location::getComment(const char* name, size_t bufsize) const -{ - // bufsize is default to 256 - // temporary variable - hid_t loc_id = getId(); // temporary variable - - // temporary C-string for the object's comment; bufsize already including - // null character - char* comment_C = new char[bufsize]; - ssize_t ret_value = H5Oget_comment_by_name(loc_id, name, comment_C, bufsize, H5P_DEFAULT); - - // if the actual length of the comment is longer than bufsize and bufsize - // was the default value, i.e., not given by the user, then call - // H5Oget_comment_by_name again with the correct value. - // If the call to H5Oget_comment_by_name returned an error, skip this block - // and throw an exception below. - if (ret_value >= 0 && (size_t)ret_value > bufsize && bufsize == 256) - { - size_t new_size = ret_value; - delete []comment_C; - comment_C = new char[new_size]; // new_size including null terminator - ret_value = H5Oget_comment_by_name(loc_id, name, comment_C, new_size, H5P_DEFAULT); - } - - // if H5Oget_comment_by_name returns SUCCEED, return the string comment, - // otherwise, throw an exception - if (ret_value < 0) { - delete []comment_C; - throw Exception("getComment", "H5Oget_comment_by_name failed"); - } - - H5std_string comment = H5std_string(comment_C); - delete []comment_C; - return (comment); -} - -//-------------------------------------------------------------------------- -// Function: H5Location::getComment -///\brief This is an overloaded member function, provided for convenience. -/// It differs from the above function in that it takes an -/// \c H5std_string for \a name. -// Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) -//-------------------------------------------------------------------------- -H5std_string H5Location::getComment(const H5std_string& name, size_t bufsize) const -{ - return(getComment(name.c_str(), bufsize)); -} #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- -// Function: H5Location::p_reference (protected) -// Purpose Creates a reference to an HDF5 object or a dataset region. +// Function: H5Location::p_reference (protected) +// Purpose Creates a reference to an HDF5 object or a dataset region. // Parameters -// name - IN: Name of the object to be referenced -// dataspace - IN: Dataspace with selection -// ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION -// Exception H5::IdComponentException -// Programmer Binh-Minh Ribler - May, 2004 +// name - IN: Name of the object to be referenced +// dataspace - IN: Dataspace with selection +// ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION +// Exception H5::IdComponentException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const { @@ -554,18 +400,17 @@ void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_ty #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- -// Function: H5Location::reference -///\brief Creates a reference to an HDF5 object or a dataset region. -///\param ref - IN: Reference pointer -///\param name - IN: Name of the object to be referenced -///\param dataspace - IN: Dataspace with selection -///\param ref_type - IN: Type of reference to query, valid values are: +// Function: H5Location::reference +///\brief Creates a reference to an HDF5 object or a dataset region. +///\param ref - IN: Reference pointer +///\param name - IN: Name of the object to be referenced +///\param dataspace - IN: Dataspace with selection +///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference. /// \li \c H5R_DATASET_REGION - Reference is a dataset region /// reference. - this is the default -///\exception H5::ReferenceException -///\notes This method is more suitable for a dataset region reference. -// Programmer Binh-Minh Ribler - May, 2004 +///\exception H5::ReferenceException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const { @@ -578,49 +423,23 @@ void H5Location::reference(void* ref, const char* name, const DataSpace& dataspa } //-------------------------------------------------------------------------- -// Function: H5Location::reference -///\brief This is an overloaded member function, provided for convenience. -/// It differs from the above function in that it takes an -/// \c H5std_string for \a name. -///\param ref - IN: Reference pointer -///\param name - IN: Name of the object to be referenced -///\param dataspace - IN: Dataspace with selection -///\param ref_type - IN: Type of reference to query, valid values are: -/// \li \c H5R_OBJECT - Reference is an object reference. -/// \li \c H5R_DATASET_REGION - Reference is a dataset region -/// reference. - this is the default -///\exception H5::ReferenceException -///\notes This method is more suitable for a dataset region reference. -// Programmer Binh-Minh Ribler - May, 2004 -//-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const H5std_string& name, const DataSpace& dataspace, H5R_type_t ref_type) const -{ - try { - p_reference(ref, name.c_str(), dataspace.getId(), ref_type); - } - catch (ReferenceException E) { - throw ReferenceException("H5Location::reference", E.getDetailMsg()); - } -} - -//-------------------------------------------------------------------------- -// Function: H5Location::reference -///\brief This is an overloaded function, provided for your convenience. -/// It differs from the above function in that it does not take -/// a DataSpace object and the reference type must be specified. -///\param ref - IN: Reference pointer -///\param name - IN: Name of the object to be referenced -///\param ref_type - IN: Type of reference to query, valid values are: -/// \li \c H5R_OBJECT - Reference is an object reference. -/// \li \c H5R_DATASET_REGION - Reference is a dataset region -///\exception H5::ReferenceException -///\notes This method is more suitable for an object reference. -// Programmer Binh-Minh Ribler - May, 2004 +// Function: H5Location::reference +///\brief This is an overloaded function, provided for your convenience. +/// It differs from the above function in that it only creates +/// a reference to an HDF5 object, not to a dataset region. +///\param ref - IN: Reference pointer +///\param name - IN: Name of the object to be referenced - \c char pointer +///\exception H5::ReferenceException +///\par Description +// This function passes H5R_OBJECT and -1 to the protected +// function for it to pass to the C API H5Rcreate +// to create a reference to the named object. +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const char* name, H5R_type_t ref_type) const +void H5Location::reference(void* ref, const char* name) const { try { - p_reference(ref, name, -1, ref_type); + p_reference(ref, name, -1, H5R_OBJECT); } catch (ReferenceException E) { throw ReferenceException("H5Location::reference", E.getDetailMsg()); @@ -628,21 +447,17 @@ void H5Location::reference(void* ref, const char* name, H5R_type_t ref_type) con } //-------------------------------------------------------------------------- -// Function: H5Location::reference -///\brief This is an overloaded function, provided for your convenience. -/// It differs from the above function in that it takes an -/// \c H5std_string for the object's name. -///\param ref - IN: Reference pointer -///\param name - IN: Name of the object to be referenced - \c H5std_string -///\param ref_type - IN: Type of reference to query, valid values are: -/// \li \c H5R_OBJECT - Reference is an object reference. -/// \li \c H5R_DATASET_REGION - Reference is a dataset region -///\notes This method is more suitable for an object reference. -// Programmer Binh-Minh Ribler - May, 2004 +// Function: H5Location::reference +///\brief This is an overloaded function, provided for your convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for the object's name. +///\param ref - IN: Reference pointer +///\param name - IN: Name of the object to be referenced - \c H5std_string +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_type) const +void H5Location::reference(void* ref, const H5std_string& name) const { - reference(ref, name.c_str(), ref_type); + reference(ref, name.c_str()); } #ifndef DOXYGEN_SHOULD_SKIP_THIS @@ -660,16 +475,10 @@ void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_t // May 2008 - BMR // Moved from IdComponent. //-------------------------------------------------------------------------- -hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const PropList& plist) +hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type) { - hid_t plist_id; - if (p_valid_id(plist.getId())) - plist_id = plist.getId(); - else - plist_id = H5P_DEFAULT; - hid_t temp_id; - temp_id = H5Rdereference2(loc_id, plist_id, ref_type, ref); + temp_id = H5Rdereference2(loc_id, H5P_DEFAULT, ref_type, ref); if (temp_id < 0) { throw ReferenceException("", "H5Rdereference failed"); @@ -687,16 +496,16 @@ hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_ty ///\param ref - IN: Reference pointer ///\param ref_type - IN: Reference type ///\exception H5::ReferenceException -// Programmer Binh-Minh Ribler - Oct, 2006 +// Programmer Binh-Minh Ribler - Oct, 2006 // Modification // May, 2008 // Corrected missing parameters. - BMR //-------------------------------------------------------------------------- -void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) +void H5Location::dereference(H5Object& obj, const void* ref, H5R_type_t ref_type) { hid_t temp_id; try { - temp_id = p_dereference(loc.getId(), ref, ref_type, plist); + temp_id = p_dereference(obj.getId(), ref, ref_type); } catch (ReferenceException E) { throw ReferenceException("H5Location::dereference - located by object", E.getDetailMsg()); @@ -706,21 +515,45 @@ void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t //-------------------------------------------------------------------------- // Function: H5Location::dereference +///\brief Dereferences a reference into an HDF5 object, given an HDF5 file. +///\param h5file - IN: HDF5 file specifying the location of the referenced object +///\param ref - IN: Reference pointer +///\param ref_type - IN: Reference type +///\exception H5::ReferenceException +// Programmer Binh-Minh Ribler - Oct, 2006 +// Modification +// May, 2008 +// Corrected missing parameters. - BMR +//-------------------------------------------------------------------------- +void H5Location::dereference(H5File& h5file, const void* ref, H5R_type_t ref_type) +{ + hid_t temp_id; + try { + temp_id = p_dereference(h5file.getId(), ref, ref_type); + } + catch (ReferenceException E) { + throw ReferenceException("H5Location::dereference - located by file", E.getDetailMsg()); + } + p_setId(temp_id); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::dereference ///\brief Dereferences a reference into an HDF5 object, given an attribute. ///\param attr - IN: Attribute specifying the location of the referenced object ///\param ref - IN: Reference pointer ///\param ref_type - IN: Reference type ///\exception H5::ReferenceException -// Programmer Binh-Minh Ribler - Oct, 2006 +// Programmer Binh-Minh Ribler - Oct, 2006 // Modification // May, 2008 // Corrected missing parameters. - BMR //-------------------------------------------------------------------------- -void H5Location::dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) +void H5Location::dereference(Attribute& attr, const void* ref, H5R_type_t ref_type) { hid_t temp_id; try { - temp_id = p_dereference(attr.getId(), ref, ref_type, plist); + temp_id = p_dereference(attr.getId(), ref, ref_type); } catch (ReferenceException E) { throw ReferenceException("H5Location::dereference - located by attribute", E.getDetailMsg()); @@ -760,20 +593,20 @@ H5G_obj_t H5Location::getObjType(void *ref, H5R_type_t ref_type) const #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- -// Function: H5Location::p_get_obj_type (protected) -// Purpose Retrieves the type of object that an object reference points to. +// Function: H5Location::p_get_obj_type (protected) +// Purpose Retrieves the type of object that an object reference points to. // Parameters -// ref - IN: Reference to query -// ref_type - IN: Type of reference to query -// Return An object type, which can be one of the following: -// H5G_UNKNOWN \tFailure occurs (-1) -// H5G_GROUP \tObject is a group. -// H5G_DATASET \tObject is a dataset. -// H5G_TYPE Object \tis a named datatype. -// H5G_LINK \tObject is a symbolic link. -// H5G_UDLINK \tObject is a user-defined link. -// Exception H5::ReferenceException -// Programmer Binh-Minh Ribler - May, 2004 +// ref - IN: Reference to query +// ref_type - IN: Type of reference to query +// Return An object type, which can be one of the following: +// H5G_UNKNOWN \tFailure occurs (-1) +// H5G_GROUP \tObject is a group. +// H5G_DATASET \tObject is a dataset. +// H5G_TYPE Object \tis a named datatype. +// H5G_LINK \tObject is a symbolic link. +// H5G_UDLINK \tObject is a user-defined link. +// Exception H5::ReferenceException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const { @@ -789,20 +622,20 @@ H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const #endif /* H5_NO_DEPRECATED_SYMBOLS */ //-------------------------------------------------------------------------- -// Function: H5Location::getRefObjType -///\brief Retrieves the type of object that an object reference points to. -///\param ref - IN: Reference to query -///\param ref_type - IN: Type of reference to query, valid values are: -/// \li \c H5R_OBJECT - Reference is an object reference. -/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference. -///\return An object type, which can be one of the following: -/// \li \c H5O_TYPE_UNKNOWN - Unknown object type (-1) -/// \li \c H5O_TYPE_GROUP - Object is a group -/// \li \c H5O_TYPE_DATASET - Object is a dataset -/// \li \c H5O_TYPE_NAMED_DATATYPE - Object is a named datatype -/// \li \c H5O_TYPE_NTYPES - Number of different object types -///\exception H5::ReferenceException -// Programmer Binh-Minh Ribler - May, 2004 +// Function: H5Location::getRefObjType +///\brief Retrieves the type of object that an object reference points to. +///\param ref - IN: Reference to query +///\param ref_type - IN: Type of reference to query, valid values are: +/// \li \c H5R_OBJECT - Reference is an object reference. +/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference. +///\return An object type, which can be one of the following: +/// \li \c H5O_TYPE_UNKNOWN - Unknown object type (-1) +/// \li \c H5O_TYPE_GROUP - Object is a group +/// \li \c H5O_TYPE_DATASET - Object is a dataset +/// \li \c H5O_TYPE_NAMED_DATATYPE - Object is a named datatype +/// \li \c H5O_TYPE_NTYPES - Number of different object types +///\exception H5::ReferenceException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const { @@ -816,19 +649,19 @@ H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- -// Function: H5Location::p_get_ref_obj_type (protected) -// Purpose Retrieves the type of object that an object reference points to. +// Function: H5Location::p_get_ref_obj_type (protected) +// Purpose Retrieves the type of object that an object reference points to. // Parameters -// ref - IN: Reference to query -// ref_type - IN: Type of reference to query -// Return An object type, which can be one of the following: +// ref - IN: Reference to query +// ref_type - IN: Type of reference to query +// Return An object type, which can be one of the following: // H5O_TYPE_UNKNOWN - Unknown object type (-1) // H5O_TYPE_GROUP - Object is a group // H5O_TYPE_DATASET - Object is a dataset // H5O_TYPE_NAMED_DATATYPE - Object is a named datatype // H5O_TYPE_NTYPES - Number of object types -// Exception H5::ReferenceException -// Programmer Binh-Minh Ribler - May, 2004 +// Exception H5::ReferenceException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const { @@ -844,29 +677,24 @@ H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const //-------------------------------------------------------------------------- -// Function: H5Location::getRegion -///\brief Retrieves a dataspace with the region pointed to selected. -///\param ref - IN: Reference to get region of -///\param ref_type - IN: Type of reference to get region of - default -// to H5R_DATASET_REGION -///\return DataSpace object -///\exception H5::ReferenceException -// Programmer Binh-Minh Ribler - May, 2004 +// Function: H5Location::p_get_region (protected) +// Purpose Retrieves a dataspace with the region pointed to selected. +// Parameters +// ref_type - IN: Type of reference to get region of - default +// to H5R_DATASET_REGION +// ref - IN: Reference to get region of +// Return Dataspace id +// Exception H5::ReferenceException +// Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -DataSpace H5Location::getRegion(void *ref, H5R_type_t ref_type) const +hid_t H5Location::p_get_region(void *ref, H5R_type_t ref_type) const { hid_t space_id = H5Rget_region(getId(), ref_type, ref); if (space_id < 0) { throw ReferenceException("", "H5Rget_region failed"); } - try { - DataSpace dataspace(space_id); - return(dataspace); - } - catch (DataSpaceIException E) { - throw ReferenceException("H5Location::getRegion", E.getDetailMsg()); - } + return(space_id); } diff --git a/c++/src/H5Location.h b/c++/src/H5Location.h index 996cc21..1f54439 100644 --- a/c++/src/H5Location.h +++ b/c++/src/H5Location.h @@ -36,12 +36,12 @@ typedef void (*attr_operator_t)( H5Location& loc/*in*/, class UserData4Aiterate { // user data for attribute iteration public: - attr_operator_t op; - void* opData; - H5Location* location; + attr_operator_t op; + void* opData; + H5Location* location; }; -// An H5Location can be a file, group, dataset, or committed datatype. +// An H5Location can be a file, group, dataset, named datatype, or attribute. class H5_DLLCPP H5Location : public IdComponent { public: @@ -85,47 +85,29 @@ class H5_DLLCPP H5Location : public IdComponent { bool attrExists(const char* name) const; bool attrExists(const H5std_string& name) const; - // Renames the named attribute to a new name. - void renameAttr(const char* oldname, const char* newname) const; - void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; - // Removes the named attribute from this location. void removeAttr(const char* name) const; void removeAttr(const H5std_string& name) const; - // Sets the comment for an HDF5 object specified by its name. - void setComment(const char* name, const char* comment) const; - void setComment(const H5std_string& name, const H5std_string& comment) const; - - // Retrieves comment for the HDF5 object specified by its name. - H5std_string getComment(const char* name, size_t bufsize=256) const; - H5std_string getComment(const H5std_string& name, size_t bufsize=256) const; - - // Removes the comment for the HDF5 object specified by its name. - void removeComment(const char* name) const; - void removeComment(const H5std_string& name) const; + // Renames the named attribute to a new name. + void renameAttr(const char* oldname, const char* newname) const; + void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; // Creates a reference to a named object or to a dataset region // in this object. - void reference(void* ref, const char* name, - H5R_type_t ref_type = H5R_OBJECT) const; - void reference(void* ref, const H5std_string& name, - H5R_type_t ref_type = H5R_DATASET_REGION) const; void reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type = H5R_DATASET_REGION) const; - void reference(void* ref, const H5std_string& name, const DataSpace& dataspace, - H5R_type_t ref_type = H5R_DATASET_REGION) const; + void reference(void* ref, const char* name) const; + void reference(void* ref, const H5std_string& name) const; // Open a referenced object whose location is specified by either // a file, an HDF5 object, or an attribute. - void dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); - void dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT); + void dereference(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + void dereference(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT); + void dereference(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT); - // Retrieves a dataspace with the region pointed to selected. - DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; - - ///\brief Returns an identifier. (pure virtual) - virtual hid_t getId() const = 0; + ///\brief Returns an identifier. (pure virtual) + virtual hid_t getId() const = 0; protected: #ifndef DOXYGEN_SHOULD_SKIP_THIS @@ -142,7 +124,7 @@ class H5_DLLCPP H5Location : public IdComponent { void p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const; // Dereferences a ref into an HDF5 id. - hid_t p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const PropList& plist); + hid_t p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type); #ifndef H5_NO_DEPRECATED_SYMBOLS // Retrieves the type of object that an object reference points to. @@ -152,6 +134,9 @@ class H5_DLLCPP H5Location : public IdComponent { // Retrieves the type of object that an object reference points to. H5O_type_t p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const; + // Retrieves a dataspace with the region pointed to selected. + hid_t p_get_region(void *ref, H5R_type_t ref_type) const; + // Noop destructor. virtual ~H5Location(); diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp index 1d96f2e..b596092 100644 --- a/c++/src/H5Object.cpp +++ b/c++/src/H5Object.cpp @@ -52,6 +52,7 @@ H5Object::H5Object() : H5Location() {} //-------------------------------------------------------------------------- H5Object::H5Object( const hid_t object_id ) : H5Location( object_id ) {} + //-------------------------------------------------------------------------- // Function: H5Object copy constructor ///\brief Copy constructor: makes a copy of the original H5Object diff --git a/c++/src/H5PropList.cpp b/c++/src/H5PropList.cpp index e070406..c14d74f 100644 --- a/c++/src/H5PropList.cpp +++ b/c++/src/H5PropList.cpp @@ -39,7 +39,7 @@ namespace H5 { //-------------------------------------------------------------------------- ///\brief Constant for default property. //-------------------------------------------------------------------------- -const PropList PropList::DEFAULT; +const PropList PropList::DEFAULT( H5P_DEFAULT ); //-------------------------------------------------------------------------- // Function Default constructor @@ -644,9 +644,6 @@ void PropList::removeProp(const H5std_string& name) const //-------------------------------------------------------------------------- bool PropList::operator==(const PropList& rhs) const { - fprintf(stderr, "operator==\n"); -H5Eprint2(H5E_DEFAULT, stderr); - htri_t ret_value = H5Pequal(id, rhs.getId()); if( ret_value > 0 ) return true; diff --git a/c++/test/trefer.cpp b/c++/test/trefer.cpp index 6acf8a9..ce18e58 100644 --- a/c++/test/trefer.cpp +++ b/c++/test/trefer.cpp @@ -27,6 +27,13 @@ #endif #include +#ifndef H5_NO_NAMESPACE +#ifndef H5_NO_STD + using std::cerr; + using std::endl; +#endif // H5_NO_STD +#endif + #include "H5Cpp.h" // C++ API header file #ifndef H5_NO_NAMESPACE @@ -37,10 +44,11 @@ const H5std_string FILE1("trefer1.h5"); const H5std_string FILE2("trefer2.h5"); +const H5std_string FILE3("trefer3.h5"); +const H5std_string DSET_DEFAULT_NAME("default"); // Dataset 1 const H5std_string DSET1_NAME("Dataset1"); -const H5std_string DSET2_NAME("Dataset2"); const int DSET1_LEN = 8; const H5std_string MEMBER1( "a_name" ); @@ -48,15 +56,15 @@ const H5std_string MEMBER2( "b_name" ); const H5std_string MEMBER3( "c_name" ); // 1-D dataset with fixed dimensions +const H5std_string SPACE1_NAME("Space1"); const int SPACE1_RANK = 1; const int SPACE1_DIM1 = 4; -/* Larger 1-D dataset with fixed dimensions */ -const int SPACE3_RANK = 1; -const int SPACE3_DIM1 = 100; +// 2-D dataset with fixed dimensions +const H5std_string SPACE2_NAME("Space2"); -/* Element selection information */ -const int POINT1_NPOINTS = 10; +// Larger 1-D dataset with fixed dimensions +const H5std_string SPACE3_NAME("Space3"); // Compound datatype typedef struct s1_t { @@ -67,122 +75,8 @@ typedef struct s1_t { /**************************************************************** ** -** test_reference_params(): Test basic H5R (reference) parameters -** for correct processing -** -****************************************************************/ -static void -test_reference_params(void) -{ - const char *write_comment = "Foo!"; /* Comments for group */ - - // Output message about test being performed - SUBTEST("Object Reference Parameters"); - - H5File* file1 = NULL; - try { - hobj_ref_t *wbuf, // buffer to write to disk - *rbuf, // buffer read from disk - *tbuf; // temp. buffer read from disk - - // Allocate write & read buffers - int temp_size = MAX(sizeof(unsigned),sizeof(hobj_ref_t)); - wbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1); - rbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1); - tbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1); - - // Create file FILE1 - file1 = new H5File (FILE1, H5F_ACC_TRUNC); - - // Create dataspace for datasets - hsize_t dims1[] = {SPACE1_DIM1}; - DataSpace sid1(SPACE1_RANK, dims1); - - // Create a group - Group group = file1->createGroup("Group1"); - - // Set group's comment - group.setComment(".", write_comment); - - // Create a dataset (inside /Group1) - DataSet dataset = group.createDataSet(DSET1_NAME, PredType::NATIVE_UINT, sid1); - - unsigned *tu32; // Temporary pointer to uint32 data - int i; - for (tu32=(unsigned *)wbuf, i=0; icreateDataSet("Dataset3", PredType::STD_REF_OBJ, sid1); - - /* Test parameters to H5Location::reference */ - try { - file1->reference(NULL, "/Group1/Dataset1"); - } catch (ReferenceException E) {} // We expect this to fail - try { - file1->reference(&wbuf[0], NULL); - } catch (ReferenceException E) {} // We expect this to fail - try { - file1->reference(&wbuf[0], ""); - } catch (ReferenceException E) {} // We expect this to fail - try { - file1->reference(&wbuf[0], "/Group1/Dataset1", H5R_MAXTYPE); - } catch (ReferenceException E) {} // We expect this to fail - try { - file1->reference(&wbuf[0], "/Group1/Dataset1", H5R_DATASET_REGION); - } catch (ReferenceException E) {} // We expect this to fail - - // Close resources - dataset.close(); - file1->close(); - // Let sid1 go out of scope - - // Free memory buffers - HDfree(wbuf); - HDfree(rbuf); - HDfree(tbuf); - - PASSED(); - } // end try - catch (Exception E) { - issue_fail_msg("test_reference_obj()", __LINE__, __FILE__, E.getCDetailMsg()); - } - - if(file1) - delete file1; -} /* test_reference_param() */ - -/**************************************************************** -** -** test_reference_obj(): Test basic object reference functions -** to various kinds of objects +** test_reference_obj(): Test basic object reference functionality. +** Tests references to various kinds of objects ** ****************************************************************/ static void test_reference_obj(void) @@ -427,412 +321,6 @@ static void test_reference_obj(void) delete file1; } // test_reference_obj() - -/**************************************************************** -** -** test_reference_group(): Test object reference functionality -** Tests for correct behavior of various routines on -** dereferenced group -** -****************************************************************/ -#define GROUPNAME "/group" -#define GROUPNAME2 "group2" -#define GROUPNAME3 "group3" -#define DSETNAME "/dset" -#define DSETNAME2 "dset2" -#define NAME_SIZE 16 - -static void -test_reference_group(void) -{ - hobj_ref_t wref; /* Reference to write */ - hobj_ref_t rref; /* Reference to read */ - int i; // counting variables - const H5std_string write_comment="Foo!"; // Comments for group - - // Output message about test being performed - SUBTEST("Object Reference to Group"); - - H5File* file1 = NULL; - try { - // Create file with a group and a dataset containing an object reference to the group - - // Create file FILE1 - file1 = new H5File (FILE1, H5F_ACC_TRUNC); - - // Create scalar dataspace - DataSpace sid1; - - // Create a group - Group group = file1->createGroup(GROUPNAME); - - /* Create nested groups */ - Group group2 = group.createGroup(GROUPNAME2); - group2.close(); - group2 = group.createGroup(GROUPNAME3); - group2.close(); - - // Create bottom dataset - DataSet dset1 = group.createDataSet(DSETNAME2, PredType::NATIVE_INT, sid1); - dset1.close(); - - // Close group 1 - group.close(); - - // Create dataset - DataSet dset2 = file1->createDataSet(DSETNAME, PredType::STD_REF_OBJ, sid1); - - file1->reference(&wref, GROUPNAME); - - // Write selection to disk - dset2.write(&wref, PredType::STD_REF_OBJ); - - // Close resources - dset2.close(); - sid1.close(); - file1->close(); - - /* - * Re-open the file and test deferencing group - */ - - // Re-open file - file1->openFile(FILE1, H5F_ACC_RDWR); - - // Re-open dataset - dset1 = file1->openDataSet(DSETNAME); - - // Read in the reference - dset1.read(&rref, PredType::STD_REF_OBJ); - - // Dereference to get the group - Group refgroup(dset1, &rref); - - // Dereference group object the other way - group.dereference(dset1, &rref); - - /* - * Various queries on the group opened - */ - - // Check number of objects in the group dereferenced by constructor - hsize_t nobjs = refgroup.getNumObjs(); - verify_val(nobjs, 3, "H5Group::getNumObjs", __LINE__, __FILE__); - - // Check number of objects in the group dereferenced by ::reference - nobjs = group.getNumObjs(); - verify_val(nobjs, 3, "H5Group::getNumObjs", __LINE__, __FILE__); - - // Check getting file name given the group dereferenced via constructor - H5std_string fname = refgroup.getFileName(); - verify_val(fname, FILE1, "H5Group::getFileName", __LINE__, __FILE__); - - // Check getting file name given the group dereferenced by ::reference - fname = group.getFileName(); - verify_val(fname, FILE1, "H5Group::getFileName", __LINE__, __FILE__); - - // Unlink one of the objects in the dereferenced group, and re-check - refgroup.unlink(GROUPNAME2); - nobjs = refgroup.getNumObjs(); - verify_val(nobjs, 2, "H5Group::getNumObjs", __LINE__, __FILE__); - - // Close resources - group.close(); - refgroup.close(); - dset1.close(); - file1->close(); - - PASSED(); - } // end try - catch (Exception E) { - issue_fail_msg("test_reference_group()", __LINE__, __FILE__, E.getCDetailMsg()); - } - - if(file1) - delete file1; -} /* test_reference_group() */ - -/**************************************************************** -** -** test_reference_region_1D(): Test 1-D reference functionality -** Tests 1-D references to various kinds of objects -** -****************************************************************/ -static void -test_reference_region_1D(void) -{ - hid_t fid1; /* HDF5 File IDs */ - hid_t dset1, /* Dataset ID */ - dset3; /* Dereferenced dataset ID */ - hid_t sid1, /* Dataspace ID #1 */ - sid3; /* Dataspace ID #3 */ - hid_t dapl_id; /* Dataset access property list */ - hsize_t dims1[] = {SPACE1_DIM1}, - dims3[] = {SPACE3_DIM1}; - hsize_t start[SPACE3_RANK]; /* Starting location of hyperslab */ - hsize_t stride[SPACE3_RANK]; /* Stride of hyperslab */ - hsize_t count[SPACE3_RANK]; /* Element count of hyperslab */ - hsize_t block[SPACE3_RANK]; /* Block size of hyperslab */ - hsize_t coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */ - hsize_t * coords; /* Coordinate buffer */ - hsize_t low[SPACE3_RANK]; /* Selection bounds */ - hsize_t high[SPACE3_RANK]; /* Selection bounds */ - uint8_t *tu8; /* Temporary pointer to uint8 data */ - H5O_type_t obj_type; /* Object type */ - int i; /* counting variables */ - herr_t ret; /* Generic return value */ - - // Output message about test being performed - SUBTEST("1-D Dataset Region Reference Functions"); - - try { - hdset_reg_ref_t *wbuf, // buffer to write to disk - *rbuf, // buffer read from disk - *tbuf; // temp. buffer read from disk - uint8_t *dwbuf, // Buffer for writing numeric data to disk - *drbuf; // Buffer for reading numeric data from disk - - // Allocate write & read buffers - wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1); - rbuf = (hdset_reg_ref_t *)HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1); - dwbuf = (uint8_t *)HDmalloc(sizeof(uint8_t) * SPACE3_DIM1); - drbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1); - - // Create file FILE1 - H5File file1(FILE2, H5F_ACC_TRUNC); - - // Create dataspace for datasets - hsize_t dims3[] = {SPACE3_DIM1}; - DataSpace sid3(SPACE3_RANK, dims3); - - // Create dataset access property list - PropList dapl(H5P_DATASET_ACCESS); - - // Create a dataset - DataSet dset3 = file1.createDataSet(DSET2_NAME, PredType::STD_U8LE, sid3); - - uint8_t *tu8; // Temporary pointer to uint8 data - for (tu8 = dwbuf, i = 0; i < SPACE3_DIM1; i++) - *tu8++ = i * 3; // from C test - - // Write selection to disk - dset3.write(dwbuf, PredType::STD_U8LE); - - // Close Dataset - dset3.close(); - - // Create dataspace for datasets - hsize_t dims1[] = {SPACE1_DIM1}; - DataSpace sid1(SPACE1_RANK, dims1); - - // Create a dataset (inside /Group1) - DataSet dset1 = file1.createDataSet(DSET1_NAME, PredType::STD_REF_DSETREG, sid1); - - /* Create references */ - - /* Select 15 2x1 hyperslabs for first reference */ - start[0] = 2; - stride[0] = 5; - count[0] = 15; - block[0] = 2; - - // Select a hyperslab region to add to the current selected region - sid3.selectHyperslab(H5S_SELECT_SET, count, start, stride, block); - - // Get and verify the number of elements in a dataspace selection - hssize_t nelms = sid3.getSelectNpoints(); - verify_val(nelms, 30, "DataSet::getRefObjType", __LINE__, __FILE__); - - // Store first dataset region - file1.reference(&wbuf[0], "/Dataset2", sid3); - - // Get and verify object type - H5O_type_t obj_type = dset1.getRefObjType(&wbuf[0], H5R_DATASET_REGION); - verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__); - - /* Select sequence of ten points for second reference */ - coord1[0][0] = 16; - coord1[1][0] = 22; - coord1[2][0] = 38; - coord1[3][0] = 41; - coord1[4][0] = 52; - coord1[5][0] = 63; - coord1[6][0] = 70; - coord1[7][0] = 89; - coord1[8][0] = 97; - coord1[9][0] = 3; - - // Selects array elements to be included in the selection for sid3 - sid3.selectElements(H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1); - - // Get and verify the number of elements in a dataspace selection - nelms = sid3.getSelectNpoints(); - verify_val(nelms, 10, "DataSet::getRefObjType", __LINE__, __FILE__); - - // Store first dataset region - file1.reference(&wbuf[1], "/Dataset2", sid3); - - // Write selection to disk - dset1.write(wbuf, PredType::STD_REF_DSETREG); - - // Close disk dataspace, dataset, and file - sid1.close(); - dset1.close(); - sid3.close(); - file1.close(); - - // Re-open the file - file1.openFile(FILE2, H5F_ACC_RDWR); - - // Open the dataset - dset1 = file1.openDataSet("/Dataset1"); - - // Read selection from disk - dset1.read(rbuf, PredType::STD_REF_DSETREG); - - // Dereference dataset object by ctor, from the location where - // 'dset1' is located - dset3.dereference(dset1, &rbuf[0], H5R_DATASET_REGION, dapl); - - /* DataSet adset3(dset1, &rbuf[0], H5R_DATASET_REGION, dapl); - */ - - // Get and verify object type - obj_type = dset1.getRefObjType(&rbuf[0], H5R_DATASET_REGION); - verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__); - - // Check information in the referenced dataset, i.e., adset3 - - // Get dataspace of adset3 the verify number of elements - sid1 = dset3.getSpace(); - nelms = sid1.getSimpleExtentNpoints(); - verify_val((long)nelms, 100, "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__); - - // Read from disk - dset3.read(drbuf, PredType::STD_U8LE); - - for(tu8 = (uint8_t *)drbuf, i = 0; i < SPACE3_DIM1; i++, tu8++) - verify_val(*tu8, (uint8_t)(i * 3), "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__); - - // Get the referenced region and verify values - - // Get region - DataSpace reg_sp = dset1.getRegion(&rbuf[0]); - - // Get and verify number of elements in a dataspace selection - nelms = reg_sp.getSelectNpoints(); - verify_val((long)nelms, 30, "DataSpace::getSelectNpoints", __LINE__, __FILE__); - - // Get and verify number of hyperslab blocks - nelms = reg_sp.getSelectHyperNblocks(); - verify_val((long)nelms, 15, "DataSpace::getSelectNpoints", __LINE__, __FILE__); - - /* Allocate space for the hyperslab blocks */ - coords = (hsize_t *)HDmalloc(nelms * SPACE3_RANK * sizeof(hsize_t) * 2); - - // Get the list of hyperslab blocks currently selected - reg_sp.getSelectHyperBlocklist((hsize_t)0, (hsize_t)nelms, coords); - - // Verify values in the list - verify_val(coords[0], 2, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[1], 3, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[2], 7, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[3], 8, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[4], 12, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[5], 13, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[6], 17, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[7], 18, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[8], 22, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[9], 23, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[10], 27, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[11], 28, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[12], 32, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[13], 33, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[14], 37, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[15], 38, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[16], 42, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[17], 43, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[18], 47, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[19], 48, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[20], 52, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[21], 53, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[22], 57, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[23], 58, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[24], 62, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[25], 63, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[26], 67, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[27], 68, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[28], 72, "Hyperslab Coordinates", __LINE__, __FILE__); - verify_val(coords[29], 73, "Hyperslab Coordinates", __LINE__, __FILE__); - - HDfree(coords); - - // Check boundaries - reg_sp.getSelectBounds(low, high); - verify_val(low[0], 2, "DataSpace::getSelectBounds", __LINE__, __FILE__); - verify_val(high[0], 73, "DataSpace::getSelectBounds", __LINE__, __FILE__); - - /* Close region space */ - reg_sp.close(); - - // Get the referenced region and verify values - - // Get region - DataSpace elm_sp = dset1.getRegion(&rbuf[1]); - - // Get and verify number of element points in the current selection - hssize_t nelmspts = elm_sp.getSelectElemNpoints(); - verify_val((long)nelmspts, 10, "DataSpace::getSelectNpoints", __LINE__, __FILE__); - - /* Allocate space for the hyperslab blocks */ - coords = (hsize_t *)HDmalloc(nelmspts * SPACE3_RANK * sizeof(hsize_t)); - - // Get the list of element points currently selected - elm_sp.getSelectElemPointlist((hsize_t)0, (hsize_t)nelmspts, coords); - - // Verify points - verify_val(coords[0], coord1[0][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[1], coord1[1][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[2], coord1[2][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[3], coord1[3][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[4], coord1[4][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[5], coord1[5][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[6], coord1[6][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[7], coord1[7][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[8], coord1[8][0], "Element Coordinates", __LINE__, __FILE__); - verify_val(coords[9], coord1[9][0], "Element Coordinates", __LINE__, __FILE__); - - HDfree(coords); - - // Check boundaries - elm_sp.getSelectBounds(low, high); - verify_val(low[0], 3, "DataSpace::getSelectBounds", __LINE__, __FILE__); - verify_val(high[0], 97, "DataSpace::getSelectBounds", __LINE__, __FILE__); - - // Close element space - elm_sp.close(); - - // Close resources - sid1.close(); - dset3.close(); - dset1.close(); - file1.close(); - - // Free memory buffers - HDfree(wbuf); - HDfree(rbuf); - HDfree(dwbuf); - HDfree(drbuf); - - PASSED(); - } // end try - catch (Exception E) { - issue_fail_msg("test_reference_region_1D()", __LINE__, __FILE__, E.getCDetailMsg()); - } - -} /* test_reference_region_1D() */ - - /**************************************************************** ** ** test_reference_compat(): Test basic object reference functionality. @@ -858,10 +346,7 @@ void test_reference(void) // Output message about test being performed MESSAGE(5, ("Testing References\n")); - test_reference_params(); // Test basic parameters of reference functionality test_reference_obj(); // Test basic object reference functionality - test_reference_group(); // Test group reference functionality - test_reference_region_1D(); // Test 1-D reference functionality test_reference_compat(); // Tests deprecated reference routines (not yet) } // test_reference() @@ -878,6 +363,5 @@ extern "C" void cleanup_reference(void) { HDremove(FILE1.c_str()); - HDremove(FILE2.c_str()); } -- cgit v0.12