From b0fe30721b1ece1721a99c9151c4685901c05d20 Mon Sep 17 00:00:00 2001 From: Quincey Koziol Date: Thu, 29 May 2014 16:26:28 -0500 Subject: [svn-r25225] Description: Bring r25215 from trunk to 1.8 branch: Bring changes from Coverity branch back to trunk: r20914: Use HDstrncpy and HDstrncat! --gh r20915: Use HDstrncpy and HDstrncat! --gh Tested on: MacOSX/64 10.9.3 (amazon) w/gcc 4.9, FORTRAN, C++, multi-threads & parallel (h5committested on the trunk) --- config/cmake/H5pubconf.h.in | 3 + configure | 2 +- configure.ac | 2 +- perform/sio_standalone.h | 1 + src/H5config.h.in | 3 + src/H5private.h | 3 + tools/lib/h5diff.c | 293 ++++++++++++++++++++++++-------------------- vms/src/h5pubconf.h | 3 + 8 files changed, 178 insertions(+), 132 deletions(-) diff --git a/config/cmake/H5pubconf.h.in b/config/cmake/H5pubconf.h.in index 9f5206d..d299987 100644 --- a/config/cmake/H5pubconf.h.in +++ b/config/cmake/H5pubconf.h.in @@ -453,6 +453,9 @@ /* Define to 1 if you have the header file. */ #cmakedefine H5_HAVE_UNISTD_H @H5_HAVE_UNISTD_H@ +/* Define to 1 if you have the `asprintf' function. */ +#cmakedefine H5_HAVE_ASPRINTF @H5_HAVE_ASPRINTF@ + /* Define to 1 if you have the `vasprintf' function. */ #cmakedefine H5_HAVE_VASPRINTF @H5_HAVE_VASPRINTF@ diff --git a/configure b/configure index f49638b..ac1926f 100755 --- a/configure +++ b/configure @@ -27307,7 +27307,7 @@ _ACEOF fi done -for ac_func in tmpfile vasprintf waitpid +for ac_func in tmpfile asprintf vasprintf waitpid do : as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh` ac_fn_c_check_func "$LINENO" "$ac_func" "$as_ac_var" diff --git a/configure.ac b/configure.ac index 2408b63..5effb8d 100644 --- a/configure.ac +++ b/configure.ac @@ -2217,7 +2217,7 @@ AC_CHECK_FUNCS([gethostname getpwuid getrusage lstat]) AC_CHECK_FUNCS([rand_r random setsysinfo]) AC_CHECK_FUNCS([signal longjmp setjmp siglongjmp sigsetjmp sigprocmask]) AC_CHECK_FUNCS([snprintf srandom strdup symlink system]) -AC_CHECK_FUNCS([tmpfile vasprintf waitpid]) +AC_CHECK_FUNCS([tmpfile asprintf vasprintf waitpid]) ## Check for vsnprintf() separately, so we can detect situations where it ## doesn't return the correct size for formatted strings that are too large diff --git a/perform/sio_standalone.h b/perform/sio_standalone.h index b407ecb..b2f8220 100644 --- a/perform/sio_standalone.h +++ b/perform/sio_standalone.h @@ -79,6 +79,7 @@ #endif /* H5_HAVE_ALARM */ #define HDasctime(T) asctime(T) #define HDasin(X) asin(X) +#define HDasprintf asprintf /*varargs*/ #define HDassert(X) assert(X) #define HDatan(X) atan(X) #define HDatan2(X,Y) atan2(X,Y) diff --git a/src/H5config.h.in b/src/H5config.h.in index 76de6c6..261c2ca 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -402,6 +402,9 @@ /* Define to 1 if you have the header file. */ #undef HAVE_UNISTD_H +/* Define to 1 if you have the `asprintf' function. */ +#undef HAVE_ASPRINTF + /* Define to 1 if you have the `vasprintf' function. */ #undef HAVE_VASPRINTF diff --git a/src/H5private.h b/src/H5private.h index 18a0fc0..3f0fccf 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -540,6 +540,9 @@ typedef struct { #ifndef HDasin #define HDasin(X) asin(X) #endif /* HDasin */ +#ifndef HDasprintf + #define HDasprintf asprintf /*varargs*/ +#endif /* HDasprintf */ #ifndef HDassert #define HDassert(X) assert(X) #endif /* HDassert */ diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 883bd5f..2eb66f9 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -468,75 +468,81 @@ static herr_t trav_grp_symlinks(const char *path, const H5L_info_t *linfo, switch(linfo->type) { - case H5L_TYPE_SOFT: - ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); - /* error */ - if (ret < 0) - goto done; - /* no dangling link option given and detect dangling link */ - else if (ret == 0) - { - tinfo->symlink_visited.dangle_link = TRUE; - trav_info_visit_lnk(path, linfo, tinfo); - if (opts->no_dangle_links) - opts->err_stat = 1; /* make dgangling link is error */ - goto done; - } + case H5L_TYPE_SOFT: + ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); + /* error */ + if (ret < 0) + goto done; + /* no dangling link option given and detect dangling link */ + else if (ret == 0) + { + tinfo->symlink_visited.dangle_link = TRUE; + trav_info_visit_lnk(path, linfo, tinfo); + if (opts->no_dangle_links) + opts->err_stat = 1; /* make dgangling link is error */ + goto done; + } - /* check if already visit the target object */ - if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path)) - goto done; + /* check if already visit the target object */ + if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path)) + goto done; - /* add this link as visited link */ - if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path) < 0) - goto done; - - if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, - trav_grp_objs,trav_grp_symlinks, tinfo) < 0) - { - parallel_print("Error: Could not get file contents\n"); - opts->err_stat = 1; - goto done; - } - break; - - case H5L_TYPE_EXTERNAL: - ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); - /* error */ - if (ret < 0) - goto done; - /* no dangling link option given and detect dangling link */ - else if (ret == 0) - { - tinfo->symlink_visited.dangle_link = TRUE; - trav_info_visit_lnk(path, linfo, tinfo); - if (opts->no_dangle_links) - opts->err_stat = 1; /* make dgangling link is error */ - goto done; - } + /* add this link as visited link */ + if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path) < 0) + goto done; + + if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, + trav_grp_objs,trav_grp_symlinks, tinfo) < 0) + { + parallel_print("Error: Could not get file contents\n"); + opts->err_stat = 1; + goto done; + } + break; + + case H5L_TYPE_EXTERNAL: + ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); + /* error */ + if (ret < 0) + goto done; + /* no dangling link option given and detect dangling link */ + else if (ret == 0) + { + tinfo->symlink_visited.dangle_link = TRUE; + trav_info_visit_lnk(path, linfo, tinfo); + if (opts->no_dangle_links) + opts->err_stat = 1; /* make dgangling link is error */ + goto done; + } - if(H5Lunpack_elink_val(lnk_info.trg_path, linfo->u.val_size, NULL, &ext_fname, &ext_path) < 0) - goto done; + if(H5Lunpack_elink_val(lnk_info.trg_path, linfo->u.val_size, NULL, &ext_fname, &ext_path) < 0) + goto done; - /* check if already visit the target object */ - if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path)) - goto done; + /* check if already visit the target object */ + if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path)) + goto done; - /* add this link as visited link */ - if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path) < 0) - goto done; - - if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, - trav_grp_objs,trav_grp_symlinks, tinfo) < 0) - { - parallel_print("Error: Could not get file contents\n"); + /* add this link as visited link */ + if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path) < 0) + goto done; + + if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, + trav_grp_objs,trav_grp_symlinks, tinfo) < 0) + { + parallel_print("Error: Could not get file contents\n"); + opts->err_stat = 1; + goto done; + } + break; + + case H5L_TYPE_HARD: + case H5L_TYPE_MAX: + case H5L_TYPE_ERROR: + default: + parallel_print("Error: Invalid link type\n"); opts->err_stat = 1; goto done; - } - break; - default: - ; - break; + break; } /* end of switch */ done: @@ -570,7 +576,6 @@ hsize_t h5diff(const char *fname1, hid_t file2_id = (-1); char filenames[2][MAX_FILENAME]; hsize_t nfound = 0; - int i; int l_ret1 = -1; int l_ret2 = -1; char * obj1fullname = NULL; @@ -649,27 +654,37 @@ hsize_t h5diff(const char *fname1, /* if any object is specified */ if (objname1) { - /* malloc 2 more for "/" and end-of-line */ - obj1fullname = (char*)HDcalloc(HDstrlen(objname1) + 2, sizeof(char)); - obj2fullname = (char*)HDcalloc(HDstrlen(objname2) + 2, sizeof(char)); - /* make the given object1 fullpath, start with "/" */ if (HDstrncmp(objname1, "/", 1)) { +#ifdef H5_HAVE_ASPRINTF + /* Use the asprintf() routine, since it does what we're trying to do below */ + HDasprintf(&obj1fullname, "/%s", objname1); +#else /* H5_HAVE_ASPRINTF */ + /* (malloc 2 more for "/" and end-of-line) */ + obj1fullname = (char*)HDmalloc(HDstrlen(objname1) + 2); HDstrcpy(obj1fullname, "/"); HDstrcat(obj1fullname, objname1); +#endif /* H5_HAVE_ASPRINTF */ } else - HDstrcpy(obj1fullname, objname1); + obj1fullname = HDstrdup(objname1); /* make the given object2 fullpath, start with "/" */ if (HDstrncmp(objname2, "/", 1)) { +#ifdef H5_HAVE_ASPRINTF + /* Use the asprintf() routine, since it does what we're trying to do below */ + HDasprintf(&obj2fullname, "/%s", objname2); +#else /* H5_HAVE_ASPRINTF */ + /* (malloc 2 more for "/" and end-of-line) */ + obj2fullname = (char*)HDmalloc(HDstrlen(objname2) + 2); HDstrcpy(obj2fullname, "/"); HDstrcat(obj2fullname, objname2); +#endif /* H5_HAVE_ASPRINTF */ } else - HDstrcpy(obj2fullname, objname2); + obj2fullname = HDstrdup(objname2); /*---------------------------------------------------------- * check if obj1 is root, group, single object or symlink @@ -701,7 +716,8 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo1.type == H5L_TYPE_HARD) { - int idx = 0; + size_t idx; + /* optional data pass */ info1_obj->opts = (diff_opt_t*)options; @@ -711,7 +727,7 @@ hsize_t h5diff(const char *fname1, options->err_stat = 1; goto out; } - obj1type = oinfo1.type; + obj1type = (h5trav_type_t)oinfo1.type; trav_info_add(info1_obj, obj1fullname, obj1type); idx = info1_obj->nused - 1; info1_obj->paths[idx].objno = oinfo1.addr; @@ -759,7 +775,8 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo2.type == H5L_TYPE_HARD) { - int idx = 0; + size_t idx; + /* optional data pass */ info2_obj->opts = (diff_opt_t*)options; @@ -769,7 +786,7 @@ hsize_t h5diff(const char *fname1, options->err_stat = 1; goto out; } - obj2type = oinfo2.type; + obj2type = (h5trav_type_t)oinfo2.type; trav_info_add(info2_obj, obj2fullname, obj2type); idx = info2_obj->nused - 1; info2_obj->paths[idx].objno = oinfo2.addr; @@ -791,11 +808,9 @@ hsize_t h5diff(const char *fname1, else { /* set root group */ - obj1fullname = (char*)HDcalloc((size_t)2, sizeof(char)); - HDstrcat(obj1fullname, "/"); + obj1fullname = (char*)HDstrdup("/"); obj1type = H5TRAV_TYPE_GROUP; - obj2fullname = (char*)HDcalloc((size_t)2, sizeof(char)); - HDstrcat(obj2fullname, "/"); + obj2fullname = (char*)HDstrdup("/"); obj2type = H5TRAV_TYPE_GROUP; } @@ -847,10 +862,11 @@ hsize_t h5diff(const char *fname1, } else if(l_ret1 != 2) /* symbolic link */ { - obj1type = trg_linfo1.trg_type; + obj1type = (h5trav_type_t)trg_linfo1.trg_type; if (info1_lp != NULL) { - int idx = info1_lp->nused - 1; - info1_lp->paths[idx].type = trg_linfo1.trg_type; + size_t idx = info1_lp->nused - 1; + + info1_lp->paths[idx].type = (h5trav_type_t)trg_linfo1.trg_type; info1_lp->paths[idx].objno = trg_linfo1.objno; info1_lp->paths[idx].fileno = trg_linfo1.fileno; } @@ -891,10 +907,11 @@ hsize_t h5diff(const char *fname1, } else if(l_ret2 != 2) /* symbolic link */ { - obj2type = trg_linfo2.trg_type; + obj2type = (h5trav_type_t)trg_linfo2.trg_type; if (info2_lp != NULL) { - int idx = info2_lp->nused - 1; - info2_lp->paths[idx].type = trg_linfo2.trg_type; + size_t idx = info2_lp->nused - 1; + + info2_lp->paths[idx].type = (h5trav_type_t)trg_linfo2.trg_type; info2_lp->paths[idx].objno = trg_linfo2.objno; info2_lp->paths[idx].fileno = trg_linfo2.fileno; } @@ -955,6 +972,8 @@ hsize_t h5diff(const char *fname1, #ifdef H5_HAVE_PARALLEL if(g_Parallel) { + int i; + if((HDstrlen(fname1) > MAX_FILENAME) || (HDstrlen(fname2) > MAX_FILENAME)) { HDfprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); @@ -980,6 +999,8 @@ hsize_t h5diff(const char *fname1, */ if(options->m_verbose) { + unsigned u; + parallel_print("\n"); /* if given objects is group under root */ if (HDstrcmp (obj1fullname,"/") || HDstrcmp (obj2fullname,"/")) @@ -987,12 +1008,12 @@ hsize_t h5diff(const char *fname1, else parallel_print("file1 file2\n"); parallel_print("---------------------------------------\n"); - for(i = 0; i < match_list->nobjs; i++) + for(u = 0; u < match_list->nobjs; u++) { char c1, c2; - c1 = (match_list->objs[i].flags[0]) ? 'x' : ' '; - c2 = (match_list->objs[i].flags[1]) ? 'x' : ' '; - parallel_print("%5c %6c %-15s\n", c1, c2, match_list->objs[i].name); + c1 = (match_list->objs[u].flags[0]) ? 'x' : ' '; + c2 = (match_list->objs[u].flags[1]) ? 'x' : ' '; + parallel_print("%5c %6c %-15s\n", c1, c2, match_list->objs[u].name); } /* end for */ parallel_print ("\n"); } /* end if */ @@ -1074,8 +1095,8 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, hsize_t nfound = 0; unsigned i; - char * grp1_path = ""; - char * grp2_path = ""; + const char * grp1_path = ""; + const char * grp2_path = ""; char * obj1_fullpath = NULL; char * obj2_fullpath = NULL; diff_args_t argdata; @@ -1087,10 +1108,10 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, * if not root, prepare object name to be pre-appended to group path to * make full path */ - if (HDstrcmp (grp1, "/")) - grp1_path = (char *)grp1; - if (HDstrcmp (grp2, "/")) - grp2_path = (char *)grp2; + if(HDstrcmp(grp1, "/")) + grp1_path = grp1; + if(HDstrcmp(grp2, "/")) + grp2_path = grp2; /*------------------------------------------------------------------------- * regarding the return value of h5diff (0, no difference in files, 1 difference ) @@ -1144,22 +1165,32 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, if( table->objs[i].flags[0] && table->objs[i].flags[1]) { /* make full path for obj1 */ - obj1_fullpath = (char*)HDcalloc (HDstrlen(grp1_path) + strlen (table->objs[i].name) + 1, sizeof (char)); +#ifdef H5_HAVE_ASPRINTF + /* Use the asprintf() routine, since it does what we're trying to do below */ + HDasprintf(&obj1_fullpath, "%s%s", grp1_path, table->objs[i].name); +#else /* H5_HAVE_ASPRINTF */ + obj1_fullpath = (char*)HDmalloc(HDstrlen(grp1_path) + HDstrlen(table->objs[i].name) + 1); HDstrcpy(obj1_fullpath, grp1_path); HDstrcat(obj1_fullpath, table->objs[i].name); +#endif /* H5_HAVE_ASPRINTF */ /* make full path for obj2 */ - obj2_fullpath = (char*)HDcalloc (HDstrlen(grp2_path) + strlen (table->objs[i].name) + 1, sizeof (char)); +#ifdef H5_HAVE_ASPRINTF + /* Use the asprintf() routine, since it does what we're trying to do below */ + HDasprintf(&obj2_fullpath, "%s%s", grp2_path, table->objs[i].name); +#else /* H5_HAVE_ASPRINTF */ + obj2_fullpath = (char*)HDmalloc(HDstrlen(grp2_path) + HDstrlen(table->objs[i].name) + 1); HDstrcpy(obj2_fullpath, grp2_path); HDstrcat(obj2_fullpath, table->objs[i].name); +#endif /* H5_HAVE_ASPRINTF */ /* get index to figure out type of the object in file1 */ - while ( info1->paths[idx1].path && - (HDstrcmp (obj1_fullpath, info1->paths[idx1].path) != 0) ) + while(info1->paths[idx1].path && + (HDstrcmp(obj1_fullpath, info1->paths[idx1].path) != 0)) idx1++; /* get index to figure out type of the object in file2 */ - while ( info2->paths[idx2].path && - (HDstrcmp (obj2_fullpath, info2->paths[idx2].path) != 0) ) + while(info2->paths[idx2].path && + (HDstrcmp(obj2_fullpath, info2->paths[idx2].path) != 0)) idx2++; /* Set argdata to pass other args into diff() */ @@ -1343,10 +1374,10 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, } /* end if */ } /* end else */ #endif /* H5_HAVE_PARALLEL */ - if (obj1_fullpath) - HDfree (obj1_fullpath); - if (obj2_fullpath) - HDfree (obj2_fullpath); + if(obj1_fullpath) + HDfree(obj1_fullpath); + if(obj2_fullpath) + HDfree(obj2_fullpath); } /* end if */ } /* end for */ @@ -1561,12 +1592,12 @@ hsize_t diff(hid_t file1_id, if (options->follow_links) { if (linkinfo1.linfo.type == H5L_TYPE_SOFT || - linkinfo1.linfo.type == H5L_TYPE_EXTERNAL) - argdata->type[0] = linkinfo1.trg_type; + linkinfo1.linfo.type == H5L_TYPE_EXTERNAL) + argdata->type[0] = (h5trav_type_t)linkinfo1.trg_type; if (linkinfo2.linfo.type == H5L_TYPE_SOFT || - linkinfo2.linfo.type == H5L_TYPE_EXTERNAL) - argdata->type[1] = linkinfo2.trg_type; + linkinfo2.linfo.type == H5L_TYPE_EXTERNAL) + argdata->type[1] = (h5trav_type_t)linkinfo2.trg_type; } } /* if objects are not the same type */ @@ -1607,29 +1638,30 @@ hsize_t diff(hid_t file1_id, { switch(object_type) { - case H5TRAV_TYPE_DATASET: - do_print_objname("dataset", path1, path2, options); - break; - case H5TRAV_TYPE_NAMED_DATATYPE: - do_print_objname("datatype", path1, path2, options); - break; - case H5TRAV_TYPE_GROUP: - do_print_objname("group", path1, path2, options); - break; - case H5TRAV_TYPE_LINK: - do_print_objname("link", path1, path2, options); - break; - case H5TRAV_TYPE_UDLINK: - if(linkinfo1.linfo.type == H5L_TYPE_EXTERNAL && linkinfo2.linfo.type == H5L_TYPE_EXTERNAL) - do_print_objname("external link", path1, path2, options); - else - do_print_objname ("user defined link", path1, path2, options); - break; - default: - parallel_print("Comparison not supported: <%s> and <%s> are of type %s\n", - path1, path2, get_type(object_type) ); - options->not_cmp = 1; - break; + case H5TRAV_TYPE_DATASET: + do_print_objname("dataset", path1, path2, options); + break; + case H5TRAV_TYPE_NAMED_DATATYPE: + do_print_objname("datatype", path1, path2, options); + break; + case H5TRAV_TYPE_GROUP: + do_print_objname("group", path1, path2, options); + break; + case H5TRAV_TYPE_LINK: + do_print_objname("link", path1, path2, options); + break; + case H5TRAV_TYPE_UDLINK: + if(linkinfo1.linfo.type == H5L_TYPE_EXTERNAL && linkinfo2.linfo.type == H5L_TYPE_EXTERNAL) + do_print_objname("external link", path1, path2, options); + else + do_print_objname ("user defined link", path1, path2, options); + break; + case H5TRAV_TYPE_UNKNOWN: + default: + parallel_print("Comparison not supported: <%s> and <%s> are of type %s\n", + path1, path2, get_type(object_type) ); + options->not_cmp = 1; + break; } /* switch(type)*/ print_found(nfound); @@ -1836,6 +1868,7 @@ hsize_t diff(hid_t file1_id, } break; + case H5TRAV_TYPE_UNKNOWN: default: if(options->m_verbose) parallel_print("Comparison not supported: <%s> and <%s> are of type %s\n", diff --git a/vms/src/h5pubconf.h b/vms/src/h5pubconf.h index fec8793..dc6da8c 100644 --- a/vms/src/h5pubconf.h +++ b/vms/src/h5pubconf.h @@ -405,6 +405,9 @@ /* Define to 1 if you have the header file. */ #define H5_HAVE_UNISTD_H 1 +/* Define to 1 if you have the `asprintf' function. */ +/* #undef H5_HAVE_ASPRINTF */ + /* Define to 1 if you have the `vasprintf' function. */ /* #undef H5_HAVE_VASPRINTF */ -- cgit v0.12