From d65d8084ff8068befb28251c9dbf62ded4f24f5c Mon Sep 17 00:00:00 2001
From: Vailin Choi <vchoi@hdfgroup.org>
Date: Fri, 27 Jul 2007 12:36:36 -0500
Subject: [svn-r14023] Purpose: reorganization.
Description:
move the h5stat tool into its own directory.
Platform tested:
kagiso.
---
MANIFEST | 35 +-
configure | 7 +-
configure.in | 3 +-
tools/Makefile.am | 2 +-
tools/Makefile.in | 2 +-
tools/h5stat/Makefile.am | 52 +
tools/h5stat/Makefile.in | 891 +++++++++++++++
tools/h5stat/h5stat.c | 1377 ++++++++++++++++++++++++
tools/h5stat/h5stat_gentest.c | 84 ++
tools/h5stat/testfiles/h5stat_filters-F.ddl | 21 +
tools/h5stat/testfiles/h5stat_filters-d.ddl | 33 +
tools/h5stat/testfiles/h5stat_filters-dT.ddl | 42 +
tools/h5stat/testfiles/h5stat_filters-file.ddl | 13 +
tools/h5stat/testfiles/h5stat_filters-g.ddl | 9 +
tools/h5stat/testfiles/h5stat_filters.ddl | 78 ++
tools/h5stat/testfiles/h5stat_filters.h5 | Bin 0 -> 46272 bytes
tools/h5stat/testfiles/h5stat_help1.ddl | 24 +
tools/h5stat/testfiles/h5stat_help2.ddl | 24 +
tools/h5stat/testfiles/h5stat_newgrat.ddl | 74 ++
tools/h5stat/testfiles/h5stat_newgrat.h5 | Bin 0 -> 72236 bytes
tools/h5stat/testfiles/h5stat_tsohm.ddl | 72 ++
tools/h5stat/testfiles/h5stat_tsohm.h5 | Bin 0 -> 3603 bytes
tools/h5stat/testh5stat.sh.in | 135 +++
tools/misc/Makefile.am | 10 +-
tools/misc/Makefile.in | 41 +-
tools/misc/h5stat.c | 1377 ------------------------
tools/misc/h5stat_gentest.c | 84 --
tools/misc/testfiles/h5stat_filters-F.ddl | 21 -
tools/misc/testfiles/h5stat_filters-d.ddl | 33 -
tools/misc/testfiles/h5stat_filters-dT.ddl | 42 -
tools/misc/testfiles/h5stat_filters-file.ddl | 13 -
tools/misc/testfiles/h5stat_filters-g.ddl | 9 -
tools/misc/testfiles/h5stat_filters.ddl | 78 --
tools/misc/testfiles/h5stat_filters.h5 | Bin 46272 -> 0 bytes
tools/misc/testfiles/h5stat_help1.ddl | 24 -
tools/misc/testfiles/h5stat_help2.ddl | 24 -
tools/misc/testfiles/h5stat_newgrat.ddl | 74 --
tools/misc/testfiles/h5stat_newgrat.h5 | Bin 72236 -> 0 bytes
tools/misc/testfiles/h5stat_tsohm.ddl | 72 --
tools/misc/testfiles/h5stat_tsohm.h5 | Bin 3603 -> 0 bytes
tools/misc/testh5stat.sh.in | 135 ---
41 files changed, 2972 insertions(+), 2043 deletions(-)
create mode 100644 tools/h5stat/Makefile.am
create mode 100644 tools/h5stat/Makefile.in
create mode 100644 tools/h5stat/h5stat.c
create mode 100644 tools/h5stat/h5stat_gentest.c
create mode 100644 tools/h5stat/testfiles/h5stat_filters-F.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters-d.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters-dT.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters-file.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters-g.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_filters.h5
create mode 100644 tools/h5stat/testfiles/h5stat_help1.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_help2.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_newgrat.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_newgrat.h5
create mode 100644 tools/h5stat/testfiles/h5stat_tsohm.ddl
create mode 100644 tools/h5stat/testfiles/h5stat_tsohm.h5
create mode 100644 tools/h5stat/testh5stat.sh.in
delete mode 100644 tools/misc/h5stat.c
delete mode 100644 tools/misc/h5stat_gentest.c
delete mode 100644 tools/misc/testfiles/h5stat_filters-F.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters-d.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters-dT.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters-file.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters-g.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters.ddl
delete mode 100644 tools/misc/testfiles/h5stat_filters.h5
delete mode 100644 tools/misc/testfiles/h5stat_help1.ddl
delete mode 100644 tools/misc/testfiles/h5stat_help2.ddl
delete mode 100644 tools/misc/testfiles/h5stat_newgrat.ddl
delete mode 100644 tools/misc/testfiles/h5stat_newgrat.h5
delete mode 100644 tools/misc/testfiles/h5stat_tsohm.ddl
delete mode 100644 tools/misc/testfiles/h5stat_tsohm.h5
delete mode 100644 tools/misc/testh5stat.sh.in
diff --git a/MANIFEST b/MANIFEST
index 1ca18f4..5a3e02a 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -991,25 +991,28 @@
./tools/misc/h5redeploy.in
./tools/misc/h5repart.c
./tools/misc/h5repart_gentest.c
-./tools/misc/h5stat.c
-./tools/misc/h5stat_gentest.c
./tools/misc/repart_test.c
./tools/misc/testh5mkgrp.sh
./tools/misc/testh5repart.sh.in
-./tools/misc/testh5stat.sh.in
-./tools/misc/testfiles/h5stat_filters-d.ddl
-./tools/misc/testfiles/h5stat_filters.ddl
-./tools/misc/testfiles/h5stat_filters-dT.ddl
-./tools/misc/testfiles/h5stat_filters-F.ddl
-./tools/misc/testfiles/h5stat_filters-file.ddl
-./tools/misc/testfiles/h5stat_filters-g.ddl
-./tools/misc/testfiles/h5stat_filters.h5
-./tools/misc/testfiles/h5stat_help1.ddl
-./tools/misc/testfiles/h5stat_help2.ddl
-./tools/misc/testfiles/h5stat_newgrat.ddl
-./tools/misc/testfiles/h5stat_newgrat.h5
-./tools/misc/testfiles/h5stat_tsohm.ddl
-./tools/misc/testfiles/h5stat_tsohm.h5
+
+./tools/h5stat/Makefile.am
+./tools/h5stat/Makefile.in
+./tools/h5stat/h5stat.c
+./tools/h5stat/h5stat_gentest.c
+./tools/h5stat/testh5stat.sh.in
+./tools/h5stat/testfiles/h5stat_filters-d.ddl
+./tools/h5stat/testfiles/h5stat_filters.ddl
+./tools/h5stat/testfiles/h5stat_filters-dT.ddl
+./tools/h5stat/testfiles/h5stat_filters-F.ddl
+./tools/h5stat/testfiles/h5stat_filters-file.ddl
+./tools/h5stat/testfiles/h5stat_filters-g.ddl
+./tools/h5stat/testfiles/h5stat_filters.h5
+./tools/h5stat/testfiles/h5stat_help1.ddl
+./tools/h5stat/testfiles/h5stat_help2.ddl
+./tools/h5stat/testfiles/h5stat_newgrat.ddl
+./tools/h5stat/testfiles/h5stat_newgrat.h5
+./tools/h5stat/testfiles/h5stat_tsohm.ddl
+./tools/h5stat/testfiles/h5stat_tsohm.h5
# h5dump
./tools/testfiles/family_file00000.h5
diff --git a/configure b/configure
index 729ae60..38085c5 100755
--- a/configure
+++ b/configure
@@ -1,5 +1,5 @@
#! /bin/sh
-# From configure.in Id: configure.in 13972 2007-07-13 02:42:17Z koziol .
+# From configure.in Id: configure.in 14022 2007-07-26 21:33:10Z koziol .
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.61 for HDF5 1.8.0-beta2post1.
#
@@ -52649,7 +52649,7 @@ if test -n "$TESTPARALLEL"; then
fi
fi
-ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/misc/testh5stat.sh examples/Makefile examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
+ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
cat >confcache <<\_ACEOF
@@ -53326,7 +53326,8 @@ do
"tools/misc/Makefile") CONFIG_FILES="$CONFIG_FILES tools/misc/Makefile" ;;
"tools/misc/h5cc") CONFIG_FILES="$CONFIG_FILES tools/misc/h5cc" ;;
"tools/misc/testh5repart.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5repart.sh" ;;
- "tools/misc/testh5stat.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5stat.sh" ;;
+ "tools/h5stat/testh5stat.sh") CONFIG_FILES="$CONFIG_FILES tools/h5stat/testh5stat.sh" ;;
+ "tools/h5stat/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5stat/Makefile" ;;
"examples/Makefile") CONFIG_FILES="$CONFIG_FILES examples/Makefile" ;;
"examples/testh5cc.sh") CONFIG_FILES="$CONFIG_FILES examples/testh5cc.sh" ;;
"c++/Makefile") CONFIG_FILES="$CONFIG_FILES c++/Makefile" ;;
diff --git a/configure.in b/configure.in
index 01e4ef2..5d1a7fb 100644
--- a/configure.in
+++ b/configure.in
@@ -3810,7 +3810,8 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/misc/Makefile
tools/misc/h5cc
tools/misc/testh5repart.sh
- tools/misc/testh5stat.sh
+ tools/h5stat/testh5stat.sh
+ tools/h5stat/Makefile
examples/Makefile
examples/testh5cc.sh
c++/Makefile
diff --git a/tools/Makefile.am b/tools/Makefile.am
index d1047da..d52942b 100644
--- a/tools/Makefile.am
+++ b/tools/Makefile.am
@@ -22,6 +22,6 @@
include $(top_srcdir)/config/commence.am
# All subdirectories
-SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
+SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat
include $(top_srcdir)/config/conclude.am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 64f0f76..eabfca2 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -304,7 +304,7 @@ TRACE = perl $(top_srcdir)/bin/trace
CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# All subdirectories
-SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
+SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat
# Automake needs to be taught how to build lib, progs, and tests targets.
# These will be filled in automatically for the most part (e.g.,
diff --git a/tools/h5stat/Makefile.am b/tools/h5stat/Makefile.am
new file mode 100644
index 0000000..b1c2024
--- /dev/null
+++ b/tools/h5stat/Makefile.am
@@ -0,0 +1,52 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+#test script and program
+TEST_PROG=h5stat_gentest
+TEST_SCRIPT=testh5stat.sh
+
+check_PROGRAMS=$(TEST_PROG)
+check_SCRIPTS=$(TEST_SCRIPT)
+SCRIPT_DEPEND=h5stat$(EXEEXT)
+
+# These are our main targets, the tools
+bin_PROGRAMS=h5stat
+bin_SCRIPTS=
+
+# Tell automake to clean h5redeploy script
+CLEANFILES=
+
+# Temporary files. *.h5 are generated by h5repart_gentest. They should
+# copied to the testfiles/ directory if update is required. fst_family*.h5
+# and scd_family*.h5 were created by setting the HDF5_NOCLEANUP variable.
+CHECK_CLEANFILES+=*.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5
+
+# These were generated by configure. Remove them only when distclean.
+DISTCLEANFILES=testh5stat.sh
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in
new file mode 100644
index 0000000..33a3060
--- /dev/null
+++ b/tools/h5stat/Makefile.in
@@ -0,0 +1,891 @@
+# Makefile.in generated by automake 1.10 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# HDF5 Library Makefile(.in)
+#
+
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
+ $(srcdir)/testh5stat.sh.in $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/conclude.am
+check_PROGRAMS = $(am__EXEEXT_1)
+bin_PROGRAMS = h5stat$(EXEEXT)
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS)
+subdir = tools/h5stat
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = testh5stat.sh
+am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)"
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+am__EXEEXT_1 = h5stat_gentest$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+h5stat_SOURCES = h5stat.c
+h5stat_OBJECTS = h5stat.$(OBJEXT)
+h5stat_LDADD = $(LDADD)
+h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+h5stat_gentest_SOURCES = h5stat_gentest.c
+h5stat_gentest_OBJECTS = h5stat_gentest.$(OBJEXT)
+h5stat_gentest_LDADD = $(LDADD)
+h5stat_gentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+DEFAULT_INCLUDES = -I. -I$(top_builddir)/src@am__isrc@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+SOURCES = h5stat.c h5stat_gentest.c
+DIST_SOURCES = h5stat.c h5stat_gentest.c
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AM_MAKEFLAGS = @AM_MAKEFLAGS@
+AR = @AR@
+
+# Set the paths for AFS installs of autotools for Linux machines
+# Ideally, these tools should never be needed during the build.
+AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
+AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
+AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AWK = @AWK@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CC_VERSION = @CC_VERSION@
+
+# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
+# but which shouldn't be exported to h5cc for building other programs.
+CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CLEARFILEBUF = @CLEARFILEBUF@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+F9XMODFLAG = @F9XMODFLAG@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS_f90 = @FCFLAGS_f90@
+FCLIBS = @FCLIBS@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GREP = @GREP@
+H5_CFLAGS = @H5_CFLAGS@
+H5_CPPFLAGS = @H5_CPPFLAGS@
+H5_CXXFLAGS = @H5_CXXFLAGS@
+H5_FCFLAGS = @H5_FCFLAGS@
+H5_LONE_COLON = @H5_LONE_COLON@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
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+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+# UPDATE: docs no longer reside in this build tree, so this target
+# is depreciated.
+install-doc uninstall-doc:
+ @echo "Nothing to be done."
+
+# clean up files generated by tests so they can be re-run.
+build-check-clean:
+ $(RM) -rf $(CHECK_CLEANFILES)
+
+# run check-clean whenever mostlyclean is run
+mostlyclean-local: build-check-clean
+
+# check-install is just a synonym for installcheck
+check-install: installcheck
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test:
+ @$(MAKE) build-check-s
+ @$(MAKE) build-check-p
+
+# Actual execution of check-s.
+build-check-s: $(LIB) $(PROGS) $(TESTS)
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
+ @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \
+ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
+
+# The dummy.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
+ tname=$(@:.chkexe_=)$(EXEEXT);\
+ log=$(@:.chkexe_=.chklog); \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(HDF_FORTRAN)" = "Xyes"; then \
+ echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(HDF_CXX)" = "Xyes"; then \
+ echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
+ else \
+ echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
+ echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ srcdir="$(srcdir)" \
+ $(TIME) $(RUNTESTS) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $(@:.chkexe_=.chkexe) || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ fi
+
+# The dummysh.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
+ @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
+ cmd=$(@:.chkexe_=);\
+ tname=`basename $$cmd`;\
+ chkname=`basename $(@:.chkexe_=.chkexe)`;\
+ log=`basename $(@:.chkexe_=.chklog)`; \
+ echo "============================"; \
+ if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
+ echo "No need to test $${tname} again."; \
+ else \
+ echo "============================" > $${log}; \
+ if test "X$(HDF_FORTRAN)" = "Xyes"; then \
+ echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ elif test "X$(HDF_CXX)" = "Xyes"; then \
+ echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
+ echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ else \
+ echo "Testing $${tname} $(TEST_FLAGS)"; \
+ echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+ fi; \
+ echo "============================" >> $${log}; \
+ RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \
+ srcdir="$(srcdir)" \
+ $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
+ && touch $${chkname} || \
+ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+ (cat $${log} && false) || exit 1; \
+ echo "" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+ echo "============================" >> $${log}; \
+ echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+ cat $${log}; \
+ fi; \
+ echo "============================"; \
+ fi
+
+# Actual execution of check-p.
+build-check-p: $(LIB) $(PROGS) $(TESTS)
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+ fi
+ @if test -n "$(TEST_PROG_PARA)"; then \
+ echo "**** Hint ****"; \
+ echo "Parallel test files reside in the current directory" \
+ "by default."; \
+ echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \
+ echo " HDF5_PARAPREFIX=/PFS/user/me"; \
+ echo " export HDF5_PARAPREFIX"; \
+ echo " make check"; \
+ echo "**** end of Hint ****"; \
+ fi
+ @for test in $(TEST_PROG_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
+ RUNTESTS="$(RUNPARALLEL)" || exit 1; \
+ fi; \
+ done
+ @for test in $(TEST_SCRIPT_PARA) dummy; do \
+ if test $$test != dummy; then \
+ $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
+ fi; \
+ done
+ @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \
+ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+ fi
+
+# Run test with different Virtual File Driver
+check-vfd: $(LIB) $(PROGS) $(TESTS)
+ @for vfd in $(VFD_LIST) dummy; do \
+ if test $$vfd != dummy; then \
+ echo "============================"; \
+ echo "Testing Virtual File Driver $$vfd"; \
+ echo "============================"; \
+ $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \
+ HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \
+ fi; \
+ done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5stat/h5stat.c b/tools/h5stat/h5stat.c
new file mode 100644
index 0000000..8f29519
--- /dev/null
+++ b/tools/h5stat/h5stat.c
@@ -0,0 +1,1377 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include <stdlib.h>
+#include <string.h>
+#include "H5private.h" /* Generic Functions */
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "hdf5.h"
+
+/* Parameters to control statistics gathered */
+#define SIZE_SMALL_GROUPS 10
+#define SIZE_SMALL_ATTRS 10
+#define SIZE_SMALL_DSETS 10
+
+#define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to
+ accommodate for user-define filters + one
+ to accomodate datasets whithout any filters */
+
+
+
+/* Datatype statistics for datasets */
+typedef struct dtype_info_t {
+ hid_t tid; /* ID of datatype */
+ unsigned long count; /* Number of types found */
+ unsigned long named; /* Number of types that are named */
+} dtype_info_t;
+
+typedef struct ohdr_info_t {
+ hsize_t total_size; /* Total size of object headers */
+ hsize_t free_size; /* Total free space in object headers */
+} ohdr_info_t;
+
+/* Info to pass to the iteration functions */
+typedef struct iter_t {
+ const char *container; /* Full name of the container object */
+ unsigned long curr_depth; /* Current depth of hierarchy */
+
+ unsigned long uniq_groups; /* Number of unique groups */
+ unsigned long uniq_dsets; /* Number of unique datasets */
+ unsigned long uniq_types; /* Number of unique named datatypes */
+ unsigned long uniq_links; /* Number of unique links */
+ unsigned long uniq_others; /* Number of other unique objects */
+
+ unsigned long max_depth; /* Maximum depth of hierarchy */
+ unsigned long max_links; /* Maximum # of links to an object */
+ hsize_t max_fanout; /* Maximum fanout from a group */
+ unsigned long num_small_groups[SIZE_SMALL_GROUPS]; /* Size of small groups tracked */
+ unsigned group_nbins; /* Number of bins for group counts */
+ unsigned long *group_bins; /* Pointer to array of bins for group counts */
+ ohdr_info_t group_ohdr_info; /* Object header information for groups */
+
+ hsize_t max_attrs; /* Maximum attributes from a group */
+ unsigned long num_small_attrs[SIZE_SMALL_ATTRS]; /* Size of small attributes tracked */
+ unsigned attr_nbins;
+ unsigned long *attr_bins;
+
+ unsigned long max_dset_rank; /* Maximum rank of dataset */
+ unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */
+ hsize_t max_dset_dims; /* Maximum dimension size of dataset */
+ unsigned long small_dset_dims[SIZE_SMALL_DSETS]; /* Size of dimensions of small datasets tracked */
+ unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */
+ unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
+ unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */
+ dtype_info_t *dset_type_info; /* Pointer to dataset datatype information found */
+ unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */
+ unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */
+ ohdr_info_t dset_ohdr_info; /* Object header information for datasets */
+ hsize_t dset_storage_size; /* Size of raw data for datasets */
+ hsize_t groups_btree_storage_size; /* btree size for group */
+ hsize_t groups_heap_storage_size; /* heap size for group */
+ hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */
+ hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */
+ hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */
+ hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */
+ hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */
+ hsize_t super_ext_size; /* superblock extension size */
+ hsize_t datasets_btree_storage_size; /* btree size for chunked dataset */
+ unsigned long nexternal; /* Number of external files for a dataset */
+ int local; /* Flag to indicate iteration over the object*/
+} iter_t;
+
+
+/* Table containing object id and object name */
+static struct {
+ int nalloc; /* number of slots allocated */
+ int nobjs; /* number of objects */
+ struct {
+ haddr_t id; /* object number */
+ char *name; /* full object name */
+ } *obj;
+} idtab_g;
+
+const char *progname = "h5stat";
+int d_status = EXIT_SUCCESS;
+static int display_all = TRUE;
+static int display_file_metadata = FALSE;
+static int display_file = FALSE;
+static int display_group_metadata = FALSE;
+static int display_group = FALSE;
+static int display_dset_metadata = FALSE;
+static int display_dset = FALSE;
+static int display_dtype_metadata = FALSE;
+/* Not used yet 11/17/06 EIP
+static int display_dtype = FALSE;
+*/
+static int display_object = FALSE;
+static int display_attr = FALSE;
+
+/* a structure for handling the order command-line parameters come in */
+struct handler_t {
+ void (*func)(void *);
+ int flag;
+ char *obj;
+};
+
+
+static const char *s_opts ="AFfhGgDdTO:V";
+static struct long_options l_opts[] = {
+ {"help", no_arg, 'h'},
+ {"hel", no_arg, 'h'},
+ {"file", no_arg, 'f'},
+ {"fil", no_arg, 'f'},
+ {"fi", no_arg, 'f'},
+ {"FILEmetadata", no_arg, 'F'},
+ {"FILEmetadat", no_arg, 'F'},
+ {"FILEmetada", no_arg, 'F'},
+ {"FILEmetad", no_arg, 'F'},
+ {"FILEmeta", no_arg, 'F'},
+ {"FILEmet", no_arg, 'F'},
+ {"FILEme", no_arg, 'F'},
+ {"FILEm", no_arg, 'F'},
+ {"group", no_arg, 'g'},
+ {"grou", no_arg, 'g'},
+ {"gro", no_arg, 'g'},
+ {"gr", no_arg, 'g'},
+ {"groupmetadata", no_arg, 'G'},
+ {"groupmetadat", no_arg, 'G'},
+ {"groupmetada", no_arg, 'G'},
+ {"groupmetad", no_arg, 'G'},
+ {"groupmeta", no_arg, 'G'},
+ {"groupmet", no_arg, 'G'},
+ {"groupme", no_arg, 'G'},
+ {"groupm", no_arg, 'G'},
+ {"dset", no_arg, 'd'},
+ {"dse", no_arg, 'd'},
+ {"ds", no_arg, 'd'},
+ {"d", no_arg, 'd'},
+ {"dsetmetadata", no_arg, 'D'},
+ {"dsetmetadat", no_arg, 'D'},
+ {"dsetmetada", no_arg, 'D'},
+ {"dsetmetad", no_arg, 'D'},
+ {"dsetmeta", no_arg, 'D'},
+ {"dsetmet", no_arg, 'D'},
+ {"dsetme", no_arg, 'D'},
+ {"dsetm", no_arg, 'D'},
+ {"dtypemetadata", no_arg, 'T'},
+ {"dtypemetadat", no_arg, 'T'},
+ {"dtypemetada", no_arg, 'T'},
+ {"dtypemetad", no_arg, 'T'},
+ {"dtypemeta", no_arg, 'T'},
+ {"dtypemet", no_arg, 'T'},
+ {"dtypeme", no_arg, 'T'},
+ {"dtypem", no_arg, 'T'},
+ {"dtype", no_arg, 'T'},
+ { "object", require_arg, 'O' },
+ { "objec", require_arg, 'O' },
+ { "obje", require_arg, 'O' },
+ { "obj", require_arg, 'O' },
+ { "ob", require_arg, 'O' },
+ { "version", no_arg, 'V' },
+ { "versio", no_arg, 'V' },
+ { "versi", no_arg, 'V' },
+ { "vers", no_arg, 'V' },
+ { "ver", no_arg, 'V' },
+ { "ve", no_arg, 'V' },
+ { "attribute", no_arg, 'A' },
+ { "attribut", no_arg, 'A' },
+ { "attribu", no_arg, 'A' },
+ { "attrib", no_arg, 'A' },
+ { "attri", no_arg, 'A' },
+ { "attr", no_arg, 'A' },
+ { "att", no_arg, 'A' },
+ { "at", no_arg, 'A' },
+ { "a", no_arg, 'A' },
+ { NULL, 0, '\0' }
+};
+
+static void
+leave(int ret)
+{
+ h5tools_close();
+ exit(ret);
+}
+
+
+static void usage(const char *prog)
+{
+ fflush(stdout);
+ fprintf(stdout, "\n");
+ fprintf(stdout, "This tool is under development. For detailed information\n");
+ fprintf(stdout, "please see the specification document at\n");
+ fprintf(stdout, "http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf\n");
+ fprintf(stdout, "\n");
+ fprintf(stdout, "Please send your comments and questions to help@hdfgroup.org\n");
+ fprintf(stdout, "\n");
+ fprintf(stdout, "Usage: %s [OPTIONS] file\n", prog);
+ fprintf(stdout, "\n");
+ fprintf(stdout, " OPTIONS\n");
+ fprintf(stdout, " -h, --help Print a usage message and exit\n");
+ fprintf(stdout, " -V, --version Print version number and exit\n");
+ fprintf(stdout, " -f, --file Print file information\n");
+ fprintf(stdout, " -F, --filemetadata Print file metadata\n");
+ fprintf(stdout, " -g, --group Print group information\n");
+ fprintf(stdout, " -G, --groupmetadata Print group metadata\n");
+ fprintf(stdout, " -d, --dset Print dataset information\n");
+ fprintf(stdout, " -D, --dsetmetadata Print dataset metadata\n");
+ fprintf(stdout, " -T, --dtypemetadata Print datatype metadata\n");
+ fprintf(stdout, " -A, --attribute Print attribute information\n");
+ fprintf(stdout, "\n");
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: ceil_log10
+ *
+ * Purpose: Compute the ceiling of log_10(x)
+ *
+ * Return: >0 on success, 0 on failure
+ *
+ * Programmer: Quincey Koziol
+ * Monday, August 22, 2005
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static unsigned
+ceil_log10(unsigned long x)
+{
+ unsigned long pow10 = 1;
+ unsigned ret = 0;
+
+ while(x >= pow10) {
+ pow10 *= 10;
+ ret++;
+ } /* end while */
+
+ return(ret);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: sym_insert
+ *
+ * Purpose: Add a symbol to the table.
+ *
+ * Return: void
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+sym_insert(H5O_info_t *oi, const char *name)
+{
+ /* Don't add it if the link count is 1 because such an object can only
+ * have one name. */
+ if(oi->rc > 1) {
+ int n;
+
+ /* Extend the table */
+ if(idtab_g.nobjs >= idtab_g.nalloc) {
+ idtab_g.nalloc = MAX(256, 2 * idtab_g.nalloc);
+ idtab_g.obj = realloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0]));
+ } /* end if */
+
+ /* Insert the entry */
+ n = idtab_g.nobjs++;
+ idtab_g.obj[n].id = oi->addr;
+ idtab_g.obj[n].name = strdup(name);
+ } /* end if */
+} /* end sym_insert() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: sym_lookup
+ *
+ * Purpose: Find another name for the specified object.
+ *
+ * Return: Success: Ptr to another name.
+ *
+ * Failure: NULL
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+sym_lookup(H5O_info_t *oi)
+{
+ int n;
+
+ /*only one name possible*/
+ if(oi->rc < 2)
+ return NULL;
+
+ for(n = 0; n < idtab_g.nobjs; n++)
+ if(idtab_g.obj[n].id == oi->addr)
+ return idtab_g.obj[n].name;
+
+ return NULL;
+} /* end sym_lookup() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: fix_name
+ *
+ * Purpose: Returns a malloc'd buffer that contains the PATH and BASE
+ * names separated by a single slash. It also removes duplicate
+ * and trailing slashes.
+ *
+ * Return: Success: Ptr to fixed name from malloc()
+ *
+ * Failure: NULL
+ *
+ * Programmer: Robb Matzke
+ * Thursday, January 21, 1999
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+fix_name(const char *path, const char *base)
+{
+ size_t n = (path ? strlen(path) : 0) + (base ? strlen(base) : 0) + 3;
+ char *s = malloc(n), prev='\0';
+ size_t len = 0;
+
+ if (path) {
+ /* Path, followed by slash */
+ for (/*void*/; *path; path++)
+ if ('/'!=*path || '/'!=prev)
+ prev = s[len++] = *path;
+ if ('/' != prev)
+ prev = s[len++] = '/';
+ }
+
+ if (base) {
+ /* Base name w/o trailing slashes */
+ const char *end = base + strlen(base);
+ while (end > base && '/' == end[-1])
+ --end;
+
+ for (/*void*/; base < end; base++)
+ if ('/' != *base || '/' != prev)
+ prev = s[len++] = *base;
+ }
+
+ s[len] = '\0';
+ return s;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: attribute_stats
+ *
+ * Purpose: Gather statistics about attributes on an object
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, July 17, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+attribute_stats(iter_t *iter, const H5O_info_t *oi)
+{
+ unsigned bin; /* "bin" the number of objects falls in */
+
+ /* Update dataset & attribute metadata info */
+ iter->attrs_btree_storage_size += oi->meta_size.attr.index_size;
+ iter->attrs_heap_storage_size += oi->meta_size.attr.heap_size;
+
+ /* Update small # of attribute count & limits */
+ if(oi->num_attrs < SIZE_SMALL_ATTRS)
+ (iter->num_small_attrs[(size_t)oi->num_attrs])++;
+ if(oi->num_attrs > iter->max_attrs)
+ iter->max_attrs = oi->num_attrs;
+
+ /* Add attribute count to proper bin */
+ bin = ceil_log10((unsigned long)oi->num_attrs);
+ if((bin + 1) > iter->attr_nbins) {
+ iter->attr_bins = realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long));
+ assert(iter->attr_bins);
+
+ /* Initialize counts for intermediate bins */
+ while(iter->attr_nbins < bin)
+ iter->attr_bins[iter->attr_nbins++] = 0;
+ iter->attr_nbins++;
+
+ /* Initialize count for new bin */
+ iter->attr_bins[bin] = 1;
+ } /* end if */
+ else
+ (iter->attr_bins[bin])++;
+
+ return 0;
+} /* end attribute_stats() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: group_stats
+ *
+ * Purpose: Gather statistics about the group
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, August 16, 2005
+ *
+ * Modifications: Refactored code from the walk_function
+ * EIP, Wednesday, August 16, 2006
+ *
+ * Vailin Choi 12 July 2007
+ * 1. Gathered storage info for btree and heap
+ * (groups and attributes)
+ * 2. Gathered info for attributes
+ *
+ * Vailin Choi 14 July 2007
+ * Cast "num_objs" and "num_attrs" to size_t
+ * Due to the -Mbounds problem for the pgi-32 bit compiler on indexing
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+group_stats(hid_t group, const char *name, const char *fullname,
+ const H5O_info_t *oi, H5G_iterate_t walk, iter_t *iter)
+{
+ hid_t gid; /* Group ID */
+ const char *last_container;
+ hsize_t num_objs;
+ unsigned bin; /* "bin" the number of objects falls in */
+ herr_t ret;
+
+ /* Gather statistics about this type of object */
+ iter->uniq_groups++;
+ if(iter->curr_depth > iter->max_depth)
+ iter->max_depth = iter->curr_depth;
+
+ /* Get object header information */
+ iter->group_ohdr_info.total_size += oi->hdr.space.total;
+ iter->group_ohdr_info.free_size += oi->hdr.space.free;
+
+ gid = H5Gopen(group, name);
+ assert(gid > 0);
+
+ /* Get number of links in this group */
+ ret = H5Gget_num_objs(gid, &num_objs);
+ assert(ret >= 0);
+
+ /* Update link stats */
+ if(num_objs < SIZE_SMALL_GROUPS)
+ (iter->num_small_groups[(size_t)num_objs])++;
+ if(num_objs > iter->max_fanout)
+ iter->max_fanout = num_objs;
+
+ /* Add group count to proper bin */
+ bin = ceil_log10((unsigned long)num_objs);
+ if((bin + 1) > iter->group_nbins) {
+ /* Allocate more storage for info about dataset's datatype */
+ iter->group_bins = realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long));
+ assert(iter->group_bins);
+
+ /* Initialize counts for intermediate bins */
+ while(iter->group_nbins < bin)
+ iter->group_bins[iter->group_nbins++] = 0;
+ iter->group_nbins++;
+
+ /* Initialize count for new bin */
+ iter->group_bins[bin] = 1;
+ } /* end if */
+ else
+ (iter->group_bins[bin])++;
+
+ /* Update group metadata info */
+ iter->groups_btree_storage_size += oi->meta_size.obj.index_size;
+ iter->groups_heap_storage_size += oi->meta_size.obj.heap_size;
+
+ /* Update attribute metadata info */
+ ret = attribute_stats(iter, oi);
+ assert(ret >= 0);
+
+ /* Close current group */
+ ret = H5Gclose(gid);
+ assert(ret >= 0);
+
+ /* Update current container info */
+ last_container = iter->container;
+ iter->container = fullname;
+ iter->curr_depth++;
+
+ /* Recursively descend into current group's objects */
+ H5Giterate(group, name, NULL, walk, iter);
+
+ /* Revert current container info */
+ iter->container = last_container;
+ iter->curr_depth--;
+
+ return 0;
+} /* end group_stats() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: dataset_stats
+ *
+ * Purpose: Gather statistics about the dataset
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, August 16, 2005
+ *
+ * Modifications: Refactored code from the walk_function
+ * EIP, Wednesday, August 16, 2006
+ *
+ * Vailin Choi 12 July 2007
+ * 1. Gathered storage info for btree and heap
+ * (chunked datasets and attributes)
+ * 2. Gathered info for attributes
+ *
+ * Vailin Choi 14 July 2007
+ * Cast "dims" and "num_attrs" to size_t
+ * Due to the -Mbounds problem for the pgi-32bit compiler on indexing
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+dataset_stats(hid_t group, const char *name, const H5O_info_t *oi, iter_t *iter)
+{
+ unsigned bin; /* "bin" the number of objects falls in */
+ hid_t did; /* Dataset ID */
+ hid_t sid; /* Dataspace ID */
+ hid_t tid; /* Datatype ID */
+ hid_t dcpl; /* Dataset creation property list ID */
+ hsize_t dims[H5S_MAX_RANK];/* Dimensions of dataset */
+ H5D_layout_t lout; /* Layout of dataset */
+ unsigned type_found; /* Whether the dataset's datatype was */
+ /* already found */
+ int ndims; /* Number of dimensions of dataset */
+ hsize_t storage; /* Size of dataset storage */
+ unsigned u; /* Local index variable */
+ int num_ext; /* Number of external files for a dataset */
+ int nfltr; /* Number of filters for a dataset */
+ H5Z_filter_t fltr; /* Filter identifier */
+ herr_t ret;
+
+ /* Gather statistics about this type of object */
+ iter->uniq_dsets++;
+
+ /* Get object header information */
+ iter->dset_ohdr_info.total_size += oi->hdr.space.total;
+ iter->dset_ohdr_info.free_size += oi->hdr.space.free;
+
+ did = H5Dopen(group, name);
+ assert(did > 0);
+
+ /* Update dataset metadata info */
+ iter->datasets_btree_storage_size += oi->meta_size.obj.index_size;
+
+ /* Update attribute metadata info */
+ ret = attribute_stats(iter, oi);
+ assert(ret >= 0);
+
+ /* Get storage info */
+ storage = H5Dget_storage_size(did);
+ iter->dset_storage_size += storage;
+
+ /* Gather dataspace statistics */
+ sid = H5Dget_space(did);
+ assert(sid > 0);
+
+ ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
+ assert(ndims >= 0);
+
+ /* Check for larger rank of dataset */
+ if((unsigned)ndims > iter->max_dset_rank)
+ iter->max_dset_rank = ndims;
+
+ /* Track the number of datasets with each rank */
+ (iter->dset_rank_count[ndims])++;
+
+ /* Only gather dim size statistics on 1-D datasets */
+ if(ndims == 1) {
+ iter->max_dset_dims = dims[0];
+ if(dims[0] < SIZE_SMALL_DSETS)
+ (iter->small_dset_dims[(size_t)dims[0]])++;
+
+ /* Add dim count to proper bin */
+ bin = ceil_log10((unsigned long)dims[0]);
+ if((bin + 1) > iter->dset_dim_nbins) {
+ /* Allocate more storage for info about dataset's datatype */
+ iter->dset_dim_bins = realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long));
+ assert(iter->dset_dim_bins);
+
+ /* Initialize counts for intermediate bins */
+ while(iter->dset_dim_nbins < bin)
+ iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
+ iter->dset_dim_nbins++;
+
+ /* Initialize count for this bin */
+ iter->dset_dim_bins[bin] = 1;
+ } /* end if */
+ else
+ (iter->dset_dim_bins[bin])++;
+ } /* end if */
+
+ ret = H5Sclose(sid);
+ assert(ret >= 0);
+
+ /* Gather datatype statistics */
+ tid = H5Dget_type(did);
+ assert(tid > 0);
+
+ type_found = FALSE;
+ for(u = 0; u < iter->dset_ntypes; u++)
+ if(H5Tequal(iter->dset_type_info[u].tid, tid) > 0) {
+ type_found = TRUE;
+ break;
+ } /* end for */
+ if(type_found)
+ (iter->dset_type_info[u].count)++;
+ else {
+ unsigned curr_ntype = iter->dset_ntypes;
+
+ /* Increment # of datatypes seen for datasets */
+ iter->dset_ntypes++;
+
+ /* Allocate more storage for info about dataset's datatype */
+ iter->dset_type_info = realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t));
+ assert(iter->dset_type_info);
+
+ /* Initialize information about datatype */
+ iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid);
+ assert(iter->dset_type_info[curr_ntype].tid > 0);
+ iter->dset_type_info[curr_ntype].count = 1;
+ iter->dset_type_info[curr_ntype].named = 0;
+
+ /* Set index for later */
+ u = curr_ntype;
+ } /* end else */
+
+ /* Check if the datatype is a named datatype */
+ if(H5Tcommitted(tid) > 0)
+ (iter->dset_type_info[u].named)++;
+
+ ret = H5Tclose(tid);
+ assert(ret >= 0);
+
+ /* Gather layout statistics */
+ dcpl = H5Dget_create_plist(did);
+ assert(dcpl > 0);
+
+ lout = H5Pget_layout(dcpl);
+ assert(lout >= 0);
+
+ /* Track the layout type for dataset */
+ (iter->dset_layouts[lout])++;
+
+ num_ext = H5Pget_external_count(dcpl);
+ assert (num_ext >= 0);
+
+ if(num_ext)
+ iter->nexternal = iter->nexternal + num_ext;
+
+ /* Track different filters */
+ if((nfltr = H5Pget_nfilters(dcpl)) >= 0) {
+ if(nfltr == 0)
+ iter->dset_comptype[0]++;
+ for(u = 0; u < (unsigned)nfltr; u++) {
+#ifdef H5_WANT_H5_V1_6_COMPAT
+ fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0);
+#else /* H5_WANT_H5_V1_6_COMPAT */
+ fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0, NULL);
+#endif /* H5_WANT_H5_V1_6_COMPAT */
+ if(fltr < (H5_NFILTERS_IMPL - 1))
+ iter->dset_comptype[fltr]++;
+ else
+ iter->dset_comptype[H5_NFILTERS_IMPL - 1]++; /*other filters*/
+ } /* end for */
+ } /* endif nfltr */
+
+ ret = H5Pclose(dcpl);
+ assert(ret >= 0);
+
+ ret = H5Dclose(did);
+ assert(ret >= 0);
+
+ return 0;
+} /* end dataset_stats() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: walk
+ *
+ * Purpose: Gather statistics about the file
+ *
+ * Return: Success: 0
+ * Failure: -1
+ *
+ * Programmer: Quincey Koziol
+ * Tuesday, August 16, 2005
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+walk(hid_t group, const char *name, void *_iter)
+{
+ iter_t *iter = (iter_t *)_iter;
+ H5O_info_t oi;
+ char *fullname = NULL;
+ char *s;
+ herr_t ret; /* Generic return value */
+
+ /* Get the full object name */
+ fullname = fix_name(iter->container, name);
+
+ /* Get object information */
+ ret = H5Oget_info(group, name, &oi, H5P_DEFAULT);
+ assert(ret >= 0);
+
+ /* If the object has already been printed then just show the object ID
+ * and return. */
+ if((s = sym_lookup(&oi))) {
+ printf("%s same as %s\n", name, s);
+ } else {
+ sym_insert(&oi, fullname);
+
+ /* Gather some statistics about the object */
+ if(oi.rc > iter->max_links)
+ iter->max_links = oi.rc;
+
+ switch(oi.type) {
+ case H5G_GROUP:
+ group_stats(group, name, fullname, &oi, walk, iter);
+ break;
+
+ case H5G_DATASET:
+ dataset_stats(group, name, &oi, iter);
+ break;
+
+ case H5G_TYPE:
+ /* Gather statistics about this type of object */
+ iter->uniq_types++;
+ break;
+
+ case H5G_LINK:
+ /* Gather statistics about links and UD links */
+ iter->uniq_links++;
+ break;
+
+ default:
+ /* Gather statistics about this type of object */
+ iter->uniq_others++;
+ break;
+ } /* end switch */
+ }
+
+ if(fullname)
+ free(fullname);
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: parse_command_line
+ *
+ * Purpose: Parses command line and sets up global variable to control output
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ * Vailin Choi 12 July 2007
+ * Added 'A' option to display attribute info
+ *
+ *-------------------------------------------------------------------------
+ */
+static struct handler_t *
+parse_command_line(int argc, const char *argv[])
+{
+ int opt, i;
+ struct handler_t *hand;
+
+ /* Allocate space to hold the command line info */
+ hand = calloc((size_t)argc, sizeof(struct handler_t));
+
+ /* parse command line options */
+ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
+ switch ((char)opt) {
+ case 'A':
+ display_all = FALSE;
+ display_attr = TRUE;
+ break;
+ case 'F':
+ display_all = FALSE;
+ display_file_metadata = TRUE;
+ break;
+ case 'f':
+ display_all = FALSE;
+ display_file = TRUE;
+ break;
+ case 'G':
+ display_all = FALSE;
+ display_group_metadata = TRUE;
+ break;
+ case 'g':
+ display_all = FALSE;
+ display_group = TRUE;
+ break;
+ case 'T':
+ display_all = FALSE;
+ display_dtype_metadata = TRUE;
+ break;
+ case 'D':
+ display_all = FALSE;
+ display_dset_metadata = TRUE;
+ break;
+ case 'd':
+ display_all = FALSE;
+ display_dset = TRUE;
+ break;
+ case 'h':
+ usage(progname);
+ leave(EXIT_SUCCESS);
+ case 'V':
+ print_version(progname);
+ leave(EXIT_SUCCESS);
+ break;
+ case 'O':
+ display_object = TRUE;
+ for (i = 0; i < argc; i++)
+ if (!hand[i].obj) {
+ hand[i].obj = HDstrdup(opt_arg);
+ hand[i].flag = 1;
+ break;
+ }
+ break;
+ default:
+ usage(progname);
+ leave(EXIT_FAILURE);
+ }
+ }
+
+ /* check for file name to be processed */
+ if (argc <= opt_ind) {
+ error_msg(progname, "missing file name\n");
+ usage(progname);
+ leave(EXIT_FAILURE);
+ }
+ return hand;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: init_iter
+ *
+ * Purpose: Initialize iter structure
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+iter_init(iter_t *iter)
+{
+ /* Clear everything to zeros */
+ memset(iter, 0, sizeof(*iter));
+
+ /* Initialize non-zero information */
+ iter->container = "/";
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_file_info
+ *
+ * Purpose: Prints information about file
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+print_file_info(const iter_t *iter)
+{
+ printf("File information\n");
+ printf("\t# of unique groups: %lu\n", iter->uniq_groups);
+ printf("\t# of unique datasets: %lu\n", iter->uniq_dsets);
+ printf("\t# of unique named dataypes: %lu\n", iter->uniq_types);
+ printf("\t# of unique links: %lu\n", iter->uniq_links);
+ printf("\t# of unique other: %lu\n", iter->uniq_others);
+ printf("\tMax. # of links to object: %lu\n", iter->max_links);
+ printf("\tMax. depth of hierarchy: %lu\n", iter->max_depth);
+ HDfprintf(stdout, "\tMax. # of objects in group: %Hu\n", iter->max_fanout);
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_file_metadata
+ *
+ * Purpose: Prints metadata information about file
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ * Vailin Choi 12 July 2007
+ * Print storage info for:
+ * 1. btree/heap storage for groups and attributes
+ * 2. btree storage for chunked dataset
+ * 3. hdr/btree/list/heap storage for SOHM table
+ * 4. superblock extension size
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+print_file_metadata(const iter_t *iter)
+{
+ printf("Object header size: (total/unused)\n");
+ HDfprintf(stdout, "\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size,
+ iter->group_ohdr_info.free_size);
+ HDfprintf(stdout, "\tDatasets: %Hu/%Hu\n", iter->dset_ohdr_info.total_size,
+ iter->dset_ohdr_info.free_size);
+
+ printf("Storage information:\n");
+ HDfprintf(stdout, "\tGroups:\n");
+ HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size);
+ HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->groups_heap_storage_size);
+
+ HDfprintf(stdout, "\tAttributes:\n");
+ HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->attrs_btree_storage_size);
+ HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->attrs_heap_storage_size);
+
+ HDfprintf(stdout, "\tChunked datasets:\n");
+ HDfprintf(stdout, "\t\tB-tree: %Hu\n", iter->datasets_btree_storage_size);
+
+ HDfprintf(stdout, "\tShared Messages:\n");
+ HDfprintf(stdout, "\t\tHeader: %Hu\n", iter->SM_hdr_storage_size);
+ HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->SM_index_storage_size);
+ HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->SM_heap_storage_size);
+
+ HDfprintf(stdout, "\tSuperblock extension: %Hu\n", iter->super_ext_size);
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_group_info
+ *
+ * Purpose: Prints information about groups in the file
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+print_group_info(const iter_t *iter)
+{
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
+
+ printf("Small groups:\n");
+ total = 0;
+ for(u = 0; u < SIZE_SMALL_GROUPS; u++) {
+ if(iter->num_small_groups[u] > 0) {
+ printf("\t# of groups of size %u: %lu\n", u, iter->num_small_groups[u]);
+ total += iter->num_small_groups[u];
+ } /* end if */
+ } /* end for */
+ printf("\tTotal # of small groups: %lu\n", total);
+
+ printf("Group bins:\n");
+ total = 0;
+ if(iter->group_bins[0] > 0) {
+ printf("\t# of groups of size 0: %lu\n", iter->group_bins[0]);
+ total = iter->group_bins[0];
+ } /* end if */
+ power = 1;
+ for(u = 1; u < iter->group_nbins; u++) {
+ if(iter->group_bins[u] > 0) {
+ printf("\t# of groups of size %lu - %lu: %lu\n", power, (power * 10) - 1,
+ iter->group_bins[u]);
+ total += iter->group_bins[u];
+ } /* end if */
+ power *= 10;
+ } /* end for */
+ printf("\tTotal # of groups: %lu\n", total);
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_attr_info
+ *
+ * Purpose: Prints information about attributes in the file
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Vailin Choi
+ * July 12, 2007
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+print_attr_info(const iter_t *iter)
+{
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
+
+ printf("Small # of attributes:\n");
+ total = 0;
+ for(u = 1; u < SIZE_SMALL_ATTRS; u++) {
+ if(iter->num_small_attrs[u] > 0) {
+ printf("\t# of objects with %u attributes: %lu\n", u, iter->num_small_attrs[u]);
+ total += iter->num_small_attrs[u];
+ } /* end if */
+ } /* end for */
+ printf("\tTotal # of objects with small # of attributes: %lu\n", total);
+
+ printf("Attribute bins:\n");
+ total = 0;
+ power = 1;
+ for(u = 1; u < iter->attr_nbins; u++) {
+ if(iter->attr_bins[u] > 0) {
+ printf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1,
+ iter->attr_bins[u]);
+ total += iter->attr_bins[u];
+ } /* end if */
+ power *= 10;
+ } /* end for */
+ printf("\tTotal # of objects with attributes: %lu\n", total);
+ printf("\tMax. # of attributes to objects: %lu\n", (unsigned long)iter->max_attrs);
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_dataset_info
+ *
+ * Purpose: Prints information about datasets in the file
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+print_dataset_info(const iter_t *iter)
+{
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ size_t dtype_size; /* Size of encoded datatype */
+ unsigned u; /* Local index variable */
+
+ if(iter->uniq_dsets > 0) {
+ printf("Dataset dimension information:\n");
+ printf("\tMax. rank of datasets: %lu\n", iter->max_dset_rank);
+ printf("\tDataset ranks:\n");
+ for(u = 0; u < H5S_MAX_RANK; u++)
+ if(iter->dset_rank_count[u] > 0)
+ printf("\t\t# of dataset with rank %u: %lu\n", u, iter->dset_rank_count[u]);
+
+ printf("1-D Dataset information:\n");
+ HDfprintf(stdout, "\tMax. dimension size of 1-D datasets: %Hu\n", iter->max_dset_dims);
+ printf("\tSmall 1-D datasets:\n");
+ total = 0;
+ for(u = 0; u < SIZE_SMALL_DSETS; u++) {
+ if(iter->small_dset_dims[u] > 0) {
+ printf("\t\t# of dataset dimensions of size %u: %lu\n", u,
+ iter->small_dset_dims[u]);
+ total += iter->small_dset_dims[u];
+ } /* end if */
+ } /* end for */
+ printf("\t\tTotal small datasets: %lu\n", total);
+
+ /* Protect against no datasets in file */
+ if(iter->dset_dim_nbins > 0) {
+ printf("\t1-D Dataset dimension bins:\n");
+ total = 0;
+ if(iter->dset_dim_bins[0] > 0) {
+ printf("\t\t# of datasets of size 0: %lu\n", iter->dset_dim_bins[0]);
+ total = iter->dset_dim_bins[0];
+ } /* end if */
+ power = 1;
+ for(u = 1; u < iter->dset_dim_nbins; u++) {
+ if(iter->dset_dim_bins[u] > 0) {
+ printf("\t\t# of datasets of size %lu - %lu: %lu\n", power, (power * 10) - 1,
+ iter->dset_dim_bins[u]);
+ total += iter->dset_dim_bins[u];
+ } /* end if */
+ power *= 10;
+ } /* end for */
+ printf("\t\tTotal # of datasets: %lu\n", total);
+ } /* end if */
+
+ printf("Dataset storage information:\n");
+ HDfprintf(stdout, "\tTotal raw data size: %Hu\n", iter->dset_storage_size);
+
+ printf("Dataset layout information:\n");
+ for(u = 0; u < H5D_NLAYOUTS; u++)
+ printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
+ (u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]);
+ printf("\tNumber of external files : %lu\n", iter->nexternal);
+
+ printf("Dataset filters information:\n");
+ printf("\tNumber of datasets with:\n");
+ printf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR+1]);
+ printf("\t\tGZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_DEFLATE]);
+ printf("\t\tSHUFFLE filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SHUFFLE]);
+ printf("\t\tFLETCHER32 filter: %lu\n", iter->dset_comptype[H5Z_FILTER_FLETCHER32]);
+ printf("\t\tSZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SZIP]);
+ printf("\t\tNBIT filter: %lu\n", iter->dset_comptype[H5Z_FILTER_NBIT]);
+ printf("\t\tSCALEOFFSET filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SCALEOFFSET]);
+ printf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL-1]);
+
+ if(display_dtype_metadata) {
+ printf("Dataset datatype information:\n");
+ printf("\t# of unique datatypes used by datasets: %lu\n", iter->dset_ntypes);
+ total = 0;
+ for(u = 0; u < iter->dset_ntypes; u++) {
+ H5Tencode(iter->dset_type_info[u].tid, NULL, &dtype_size);
+ printf("\tDataset datatype #%u:\n", u);
+ printf("\t\tCount (total/named) = (%lu/%lu)\n", iter->dset_type_info[u].count, iter->dset_type_info[u].named);
+ printf("\t\tSize (desc./elmt) = (%lu/%lu)\n", (unsigned long)dtype_size,
+ (unsigned long)H5Tget_size(iter->dset_type_info[u].tid));
+ H5Tclose(iter->dset_type_info[u].tid);
+ total += iter->dset_type_info[u].count;
+ } /* end for */
+ printf("\tTotal dataset datatype count: %lu\n", total);
+ }
+ } /* end if */
+
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_file_statistics
+ *
+ * Purpose: Prints file statistics
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Saturday, August 12, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+print_file_statistics(const iter_t *iter)
+{
+ if(display_all) {
+ display_file = TRUE;
+ display_file_metadata = TRUE;
+ display_group = TRUE;
+ display_group_metadata = TRUE;
+ display_dset = TRUE;
+ display_dtype_metadata = TRUE;
+ display_attr = TRUE;
+ }
+
+ if(display_file) print_file_info(iter);
+ if(display_file_metadata) print_file_metadata(iter);
+ if(display_group) print_group_info(iter);
+ if(display_dset) print_dataset_info(iter);
+ if(display_attr) print_attr_info(iter);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_object_statistics
+ *
+ * Purpose: Prints object statistics
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Thursday, August 17, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+print_object_statistics(const char *name)
+{
+ printf("Object name %s\n", name);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: print_statistics
+ *
+ * Purpose: Prints statistics
+ *
+ * Return: Success: 0
+ *
+ * Failure: Never fails
+ *
+ * Programmer: Elena Pourmal
+ * Thursday, August 17, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+print_statistics(const char *name, const iter_t *iter)
+{
+ if(display_object)
+ print_object_statistics(name);
+ else
+ print_file_statistics(iter);
+}
+
+
+int
+main(int argc, const char *argv[])
+{
+ iter_t iter;
+ const char *fname = NULL;
+ hid_t fid;
+ struct handler_t *hand;
+ char root[] = "/";
+ int i;
+ H5F_info_t finfo;
+
+
+ /* Disable error reporting */
+ H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+
+ /* Initialize h5tools lib */
+ h5tools_init();
+ hand = parse_command_line (argc, argv);
+ if (!hand) {
+ error_msg(progname, "unable to parse command line arguments \n");
+ leave(EXIT_FAILURE);
+ }
+
+ fname = argv[opt_ind];
+ hand[opt_ind].obj = root;
+ hand[opt_ind].flag = 1;
+ if (display_object) hand[opt_ind].flag = 0;
+
+ printf("Filename: %s\n", fname);
+
+ fid = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT);
+ if (fid < 0) {
+ error_msg(progname, "unable to open file \"%s\"\n", fname);
+ leave(EXIT_FAILURE);
+ }
+
+ /* Initialize iter structure */
+ iter_init(&iter);
+
+ /* Get storge info for SOHM's btree/list/heap and superblock extension */
+ if(H5Fget_info(fid, &finfo) < 0)
+ warn_msg(progname, "Unable to retrieve SOHM info\n");
+ else {
+ iter.super_ext_size = finfo.super_ext_size;
+ iter.SM_hdr_storage_size = finfo.sohm.hdr_size;
+ iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size;
+ iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size;
+ }
+
+ /* Walk the objects or all file */
+ for(i = 0; i < argc; i++) {
+ if(hand[i].obj) {
+ if(hand[i].flag) {
+ walk(fid, hand[i].obj, &iter);
+ print_statistics(hand[i].obj, &iter);
+ }
+ }
+ }
+
+ free(hand);
+
+ if(H5Fclose(fid) < 0) {
+ error_msg(progname, "unable to close file \"%s\"\n", fname);
+ leave(EXIT_FAILURE);
+ }
+
+ leave(EXIT_SUCCESS);
+}
+
diff --git a/tools/h5stat/h5stat_gentest.c b/tools/h5stat/h5stat_gentest.c
new file mode 100644
index 0000000..f0219bd
--- /dev/null
+++ b/tools/h5stat/h5stat_gentest.c
@@ -0,0 +1,84 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Generate the binary hdf5 files for the h5stat tests.
+ * Usage: just execute the program without any arguments will
+ * generate all the binary hdf5 files in the ./testfiles directory.
+ *
+ * If you regenerate the test files (e.g., changing some code,
+ * trying it on a new platform, ...), you need to verify the correctness
+ * of the expected output and update the corresponding *.ddl files.
+ */
+
+#include "hdf5.h"
+
+#define FILE "h5stat_newgrat.h5"
+#define DATASET_NAME "DATASET_NAME"
+#define GROUP_NAME "GROUP"
+#define ATTR_NAME "ATTR"
+#define NUM_GRPS 350
+#define NUM_ATTRS 100
+
+/*
+ * Generate 1.8 HDF5 file
+ * with NUM_GRPS groups
+ * with NUM_ATTRS for the
+ */
+static void gen_file(void)
+{
+ int ret, i;
+ hid_t fapl, gid;
+ hid_t file, type_id, space_id, attr_id, dset_id;
+ char name[30];
+ char attrname[30];
+
+
+ fapl = H5Pcreate(H5P_FILE_ACCESS);
+ ret = H5Pset_latest_format(fapl,1);
+
+ /* Create dataset */
+ file=H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
+ for (i=1; i<=NUM_GRPS; i++) {
+ sprintf(name, "%s%d", GROUP_NAME,i);
+ gid = H5Gcreate(file, name, (size_t)0);
+ H5Gclose(gid);
+ }
+
+
+ /* Create a datatype to commit and use */
+ type_id=H5Tcopy(H5T_NATIVE_INT);
+ /* Create dataspace for dataset */
+ space_id=H5Screate(H5S_SCALAR);
+ /* Create dataset */
+ dset_id=H5Dcreate(file, DATASET_NAME,type_id,space_id,H5P_DEFAULT);
+ for (i=1; i<=NUM_ATTRS; i++) {
+ sprintf(attrname, "%s%d", ATTR_NAME,i);
+ attr_id=H5Acreate(dset_id,attrname, type_id,space_id,H5P_DEFAULT);
+ ret=H5Aclose(attr_id);
+ }
+
+ ret=H5Dclose(dset_id);
+ ret=H5Sclose(space_id);
+ ret=H5Tclose(type_id);
+ ret=H5Fclose(file);
+}
+
+int main(void)
+{
+ gen_file();
+
+ return 0;
+}
diff --git a/tools/h5stat/testfiles/h5stat_filters-F.ddl b/tools/h5stat/testfiles/h5stat_filters-F.ddl
new file mode 100644
index 0000000..544d0c7
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters-F.ddl
@@ -0,0 +1,21 @@
+#############################
+Expected output for 'h5stat -F h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+Object header size: (total/unused)
+ Groups: 48/8
+ Datasets: 4936/1344
+Storage information:
+ Groups:
+ B-tree/List: 1200
+ Heap: 288
+ Attributes:
+ B-tree/List: 0
+ Heap: 0
+ Chunked datasets:
+ B-tree: 31392
+ Shared Messages:
+ Header: 0
+ B-tree/List: 0
+ Heap: 0
+ Superblock extension: 0
diff --git a/tools/h5stat/testfiles/h5stat_filters-d.ddl b/tools/h5stat/testfiles/h5stat_filters-d.ddl
new file mode 100644
index 0000000..e83c6c4
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters-d.ddl
@@ -0,0 +1,33 @@
+#############################
+Expected output for 'h5stat -d h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+Dataset dimension information:
+ Max. rank of datasets: 2
+ Dataset ranks:
+ # of dataset with rank 1: 1
+ # of dataset with rank 2: 14
+1-D Dataset information:
+ Max. dimension size of 1-D datasets: 100
+ Small 1-D datasets:
+ Total small datasets: 0
+ 1-D Dataset dimension bins:
+ # of datasets of size 100 - 999: 1
+ Total # of datasets: 1
+Dataset storage information:
+ Total raw data size: 8659
+Dataset layout information:
+ Dataset layout counts[COMPACT]: 1
+ Dataset layout counts[CONTIG]: 2
+ Dataset layout counts[CHUNKED]: 12
+ Number of external files : 2
+Dataset filters information:
+ Number of datasets with:
+ NO filter: 7
+ GZIP filter: 2
+ SHUFFLE filter: 2
+ FLETCHER32 filter: 2
+ SZIP filter: 2
+ NBIT filter: 2
+ SCALEOFFSET filter: 1
+ USER-DEFINED filter: 1
diff --git a/tools/h5stat/testfiles/h5stat_filters-dT.ddl b/tools/h5stat/testfiles/h5stat_filters-dT.ddl
new file mode 100644
index 0000000..62735f0
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters-dT.ddl
@@ -0,0 +1,42 @@
+#############################
+Expected output for 'h5stat -dT h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+Dataset dimension information:
+ Max. rank of datasets: 2
+ Dataset ranks:
+ # of dataset with rank 1: 1
+ # of dataset with rank 2: 14
+1-D Dataset information:
+ Max. dimension size of 1-D datasets: 100
+ Small 1-D datasets:
+ Total small datasets: 0
+ 1-D Dataset dimension bins:
+ # of datasets of size 100 - 999: 1
+ Total # of datasets: 1
+Dataset storage information:
+ Total raw data size: 8659
+Dataset layout information:
+ Dataset layout counts[COMPACT]: 1
+ Dataset layout counts[CONTIG]: 2
+ Dataset layout counts[CHUNKED]: 12
+ Number of external files : 2
+Dataset filters information:
+ Number of datasets with:
+ NO filter: 7
+ GZIP filter: 2
+ SHUFFLE filter: 2
+ FLETCHER32 filter: 2
+ SZIP filter: 2
+ NBIT filter: 2
+ SCALEOFFSET filter: 1
+ USER-DEFINED filter: 1
+Dataset datatype information:
+ # of unique datatypes used by datasets: 2
+ Dataset datatype #0:
+ Count (total/named) = (14/0)
+ Size (desc./elmt) = (14/4)
+ Dataset datatype #1:
+ Count (total/named) = (1/0)
+ Size (desc./elmt) = (14/4)
+ Total dataset datatype count: 15
diff --git a/tools/h5stat/testfiles/h5stat_filters-file.ddl b/tools/h5stat/testfiles/h5stat_filters-file.ddl
new file mode 100644
index 0000000..c6aeef0
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters-file.ddl
@@ -0,0 +1,13 @@
+#############################
+Expected output for 'h5stat -f h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+File information
+ # of unique groups: 1
+ # of unique datasets: 15
+ # of unique named dataypes: 1
+ # of unique links: 0
+ # of unique other: 0
+ Max. # of links to object: 1
+ Max. depth of hierarchy: 0
+ Max. # of objects in group: 16
diff --git a/tools/h5stat/testfiles/h5stat_filters-g.ddl b/tools/h5stat/testfiles/h5stat_filters-g.ddl
new file mode 100644
index 0000000..d488b8f
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters-g.ddl
@@ -0,0 +1,9 @@
+#############################
+Expected output for 'h5stat -g h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+Small groups:
+ Total # of small groups: 0
+Group bins:
+ # of groups of size 10 - 99: 1
+ Total # of groups: 1
diff --git a/tools/h5stat/testfiles/h5stat_filters.ddl b/tools/h5stat/testfiles/h5stat_filters.ddl
new file mode 100644
index 0000000..4dd6aee
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_filters.ddl
@@ -0,0 +1,78 @@
+#############################
+Expected output for 'h5stat h5stat_filters.h5'
+#############################
+Filename: h5stat_filters.h5
+File information
+ # of unique groups: 1
+ # of unique datasets: 15
+ # of unique named dataypes: 1
+ # of unique links: 0
+ # of unique other: 0
+ Max. # of links to object: 1
+ Max. depth of hierarchy: 0
+ Max. # of objects in group: 16
+Object header size: (total/unused)
+ Groups: 48/8
+ Datasets: 4936/1344
+Storage information:
+ Groups:
+ B-tree/List: 1200
+ Heap: 288
+ Attributes:
+ B-tree/List: 0
+ Heap: 0
+ Chunked datasets:
+ B-tree: 31392
+ Shared Messages:
+ Header: 0
+ B-tree/List: 0
+ Heap: 0
+ Superblock extension: 0
+Small groups:
+ Total # of small groups: 0
+Group bins:
+ # of groups of size 10 - 99: 1
+ Total # of groups: 1
+Dataset dimension information:
+ Max. rank of datasets: 2
+ Dataset ranks:
+ # of dataset with rank 1: 1
+ # of dataset with rank 2: 14
+1-D Dataset information:
+ Max. dimension size of 1-D datasets: 100
+ Small 1-D datasets:
+ Total small datasets: 0
+ 1-D Dataset dimension bins:
+ # of datasets of size 100 - 999: 1
+ Total # of datasets: 1
+Dataset storage information:
+ Total raw data size: 8659
+Dataset layout information:
+ Dataset layout counts[COMPACT]: 1
+ Dataset layout counts[CONTIG]: 2
+ Dataset layout counts[CHUNKED]: 12
+ Number of external files : 2
+Dataset filters information:
+ Number of datasets with:
+ NO filter: 7
+ GZIP filter: 2
+ SHUFFLE filter: 2
+ FLETCHER32 filter: 2
+ SZIP filter: 2
+ NBIT filter: 2
+ SCALEOFFSET filter: 1
+ USER-DEFINED filter: 1
+Dataset datatype information:
+ # of unique datatypes used by datasets: 2
+ Dataset datatype #0:
+ Count (total/named) = (14/0)
+ Size (desc./elmt) = (14/4)
+ Dataset datatype #1:
+ Count (total/named) = (1/0)
+ Size (desc./elmt) = (14/4)
+ Total dataset datatype count: 15
+Small # of attributes:
+ Total # of objects with small # of attributes: 0
+Attribute bins:
+ Total # of objects with attributes: 0
+ Max. # of attributes to objects: 0
diff --git a/tools/h5stat/testfiles/h5stat_filters.h5 b/tools/h5stat/testfiles/h5stat_filters.h5
new file mode 100644
index 0000000..5b5f4bb
Binary files /dev/null and b/tools/h5stat/testfiles/h5stat_filters.h5 differ
diff --git a/tools/h5stat/testfiles/h5stat_help1.ddl b/tools/h5stat/testfiles/h5stat_help1.ddl
new file mode 100644
index 0000000..0841572
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_help1.ddl
@@ -0,0 +1,24 @@
+#############################
+Expected output for 'h5stat -h'
+#############################
+
+This tool is under development. For detailed information
+please see the specification document at
+http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf
+
+Please send your comments and questions to help@hdfgroup.org
+
+Usage: h5stat [OPTIONS] file
+
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -f, --file Print file information
+ -F, --filemetadata Print file metadata
+ -g, --group Print group information
+ -G, --groupmetadata Print group metadata
+ -d, --dset Print dataset information
+ -D, --dsetmetadata Print dataset metadata
+ -T, --dtypemetadata Print datatype metadata
+ -A, --attribute Print attribute information
+
diff --git a/tools/h5stat/testfiles/h5stat_help2.ddl b/tools/h5stat/testfiles/h5stat_help2.ddl
new file mode 100644
index 0000000..1e6295b
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_help2.ddl
@@ -0,0 +1,24 @@
+#############################
+Expected output for 'h5stat --help'
+#############################
+
+This tool is under development. For detailed information
+please see the specification document at
+http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf
+
+Please send your comments and questions to help@hdfgroup.org
+
+Usage: h5stat [OPTIONS] file
+
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -V, --version Print version number and exit
+ -f, --file Print file information
+ -F, --filemetadata Print file metadata
+ -g, --group Print group information
+ -G, --groupmetadata Print group metadata
+ -d, --dset Print dataset information
+ -D, --dsetmetadata Print dataset metadata
+ -T, --dtypemetadata Print datatype metadata
+ -A, --attribute Print attribute information
+
diff --git a/tools/h5stat/testfiles/h5stat_newgrat.ddl b/tools/h5stat/testfiles/h5stat_newgrat.ddl
new file mode 100644
index 0000000..228d565
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_newgrat.ddl
@@ -0,0 +1,74 @@
+#############################
+Expected output for 'h5stat h5stat_newgrat.h5'
+#############################
+Filename: h5stat_newgrat.h5
+File information
+ # of unique groups: 351
+ # of unique datasets: 1
+ # of unique named dataypes: 0
+ # of unique links: 0
+ # of unique other: 0
+ Max. # of links to object: 1
+ Max. depth of hierarchy: 1
+ Max. # of objects in group: 351
+Object header size: (total/unused)
+ Groups: 51597/32292
+ Datasets: 414/312
+Storage information:
+ Groups:
+ B-tree/List: 5158
+ Heap: 7643
+ Attributes:
+ B-tree/List: 2598
+ Heap: 4442
+ Chunked datasets:
+ B-tree: 0
+ Shared Messages:
+ Header: 0
+ B-tree/List: 0
+ Heap: 0
+ Superblock extension: 0
+Small groups:
+ # of groups of size 0: 350
+ Total # of small groups: 350
+Group bins:
+ # of groups of size 0: 350
+ # of groups of size 100 - 999: 1
+ Total # of groups: 351
+Dataset dimension information:
+ Max. rank of datasets: 0
+ Dataset ranks:
+ # of dataset with rank 0: 1
+1-D Dataset information:
+ Max. dimension size of 1-D datasets: 0
+ Small 1-D datasets:
+ Total small datasets: 0
+Dataset storage information:
+ Total raw data size: 0
+Dataset layout information:
+ Dataset layout counts[COMPACT]: 0
+ Dataset layout counts[CONTIG]: 1
+ Dataset layout counts[CHUNKED]: 0
+ Number of external files : 0
+Dataset filters information:
+ Number of datasets with:
+ NO filter: 1
+ GZIP filter: 0
+ SHUFFLE filter: 0
+ FLETCHER32 filter: 0
+ SZIP filter: 0
+ NBIT filter: 0
+ SCALEOFFSET filter: 0
+ USER-DEFINED filter: 0
+Dataset datatype information:
+ # of unique datatypes used by datasets: 1
+ Dataset datatype #0:
+ Count (total/named) = (1/0)
+ Size (desc./elmt) = (14/4)
+ Total dataset datatype count: 1
+Small # of attributes:
+ Total # of objects with small # of attributes: 0
+Attribute bins:
+ # of objects with 100 - 999 attributes: 1
+ Total # of objects with attributes: 1
+ Max. # of attributes to objects: 100
diff --git a/tools/h5stat/testfiles/h5stat_newgrat.h5 b/tools/h5stat/testfiles/h5stat_newgrat.h5
new file mode 100644
index 0000000..cab98bb
Binary files /dev/null and b/tools/h5stat/testfiles/h5stat_newgrat.h5 differ
diff --git a/tools/h5stat/testfiles/h5stat_tsohm.ddl b/tools/h5stat/testfiles/h5stat_tsohm.ddl
new file mode 100644
index 0000000..572965e
--- /dev/null
+++ b/tools/h5stat/testfiles/h5stat_tsohm.ddl
@@ -0,0 +1,72 @@
+#############################
+Expected output for 'h5stat h5stat_tsohm.h5'
+#############################
+Filename: h5stat_tsohm.h5
+File information
+ # of unique groups: 1
+ # of unique datasets: 2
+ # of unique named dataypes: 0
+ # of unique links: 0
+ # of unique other: 0
+ Max. # of links to object: 1
+ Max. depth of hierarchy: 0
+ Max. # of objects in group: 2
+Object header size: (total/unused)
+ Groups: 51/2
+ Datasets: 568/358
+Storage information:
+ Groups:
+ B-tree/List: 872
+ Heap: 120
+ Attributes:
+ B-tree/List: 0
+ Heap: 0
+ Chunked datasets:
+ B-tree: 0
+ Shared Messages:
+ Header: 38
+ B-tree/List: 550
+ Heap: 1316
+ Superblock extension: 40
+Small groups:
+ # of groups of size 2: 1
+ Total # of small groups: 1
+Group bins:
+ # of groups of size 1 - 9: 1
+ Total # of groups: 1
+Dataset dimension information:
+ Max. rank of datasets: 2
+ Dataset ranks:
+ # of dataset with rank 2: 2
+1-D Dataset information:
+ Max. dimension size of 1-D datasets: 0
+ Small 1-D datasets:
+ Total small datasets: 0
+Dataset storage information:
+ Total raw data size: 0
+Dataset layout information:
+ Dataset layout counts[COMPACT]: 0
+ Dataset layout counts[CONTIG]: 0
+ Dataset layout counts[CHUNKED]: 2
+ Number of external files : 0
+Dataset filters information:
+ Number of datasets with:
+ NO filter: 2
+ GZIP filter: 0
+ SHUFFLE filter: 0
+ FLETCHER32 filter: 0
+ SZIP filter: 0
+ NBIT filter: 0
+ SCALEOFFSET filter: 0
+ USER-DEFINED filter: 0
+Dataset datatype information:
+ # of unique datatypes used by datasets: 1
+ Dataset datatype #0:
+ Count (total/named) = (2/0)
+ Size (desc./elmt) = (14/4)
+ Total dataset datatype count: 2
+Small # of attributes:
+ Total # of objects with small # of attributes: 0
+Attribute bins:
+ Total # of objects with attributes: 0
+ Max. # of attributes to objects: 0
diff --git a/tools/h5stat/testfiles/h5stat_tsohm.h5 b/tools/h5stat/testfiles/h5stat_tsohm.h5
new file mode 100644
index 0000000..45ee36c
Binary files /dev/null and b/tools/h5stat/testfiles/h5stat_tsohm.h5 differ
diff --git a/tools/h5stat/testh5stat.sh.in b/tools/h5stat/testh5stat.sh.in
new file mode 100644
index 0000000..66d05be
--- /dev/null
+++ b/tools/h5stat/testh5stat.sh.in
@@ -0,0 +1,135 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Tests for the h5dump tool
+
+# Determine which filters are available
+USE_FILTER_SZIP="@USE_FILTER_SZIP@"
+USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
+USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
+USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
+USE_FILTER_NBIT="@USE_FILTER_NBIT@"
+USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
+
+STAT=h5stat # The tool name
+STAT_BIN=`pwd`/$STAT # The path of the tool binary
+
+CMP='cmp -s'
+DIFF='diff -c'
+
+nerrors=0
+verbose=yes
+
+# The build (current) directory might be different than the source directory.
+if test -z "$srcdir"; then
+ srcdir=.
+fi
+
+test -d ./testfiles || mkdir ./testfiles
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+#
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+# Run a test and print PASS or *FAIL*. If a test fails then increment
+# the `nerrors' global variable and (if $verbose is set) display the
+# difference between the actual output and the expected output. The
+# expected output is given as the first argument to this function and
+# the actual output file is calculated by replacing the `.ddl' with
+# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
+# non-zero value.
+#
+TOOLTEST() {
+ expect="$srcdir/testfiles/$1"
+ actual="./testfiles/`basename $1 .ddl`.out"
+ actual_err="./testfiles/`basename $1 .ddl`.err"
+ shift
+
+ # Run test.
+ TESTING $STAT $@
+ (
+ echo "#############################"
+ echo "Expected output for '$STAT $@'"
+ echo "#############################"
+ cd $srcdir/testfiles
+ $RUNSERIAL $STAT_BIN $@
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err
+ fi
+}
+
+
+# Print a "SKIP" message
+SKIP() {
+ TESTING $STAT $@
+ echo " -SKIP-"
+}
+
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+
+# Test for help flag
+TOOLTEST h5stat_help1.ddl -h
+TOOLTEST h5stat_help2.ddl --help
+
+# Test file with groups, compressed datasets, user-applied fileters, etc.
+# h5stat_filters.h5 is a copy of ../../testfiles/tfilters.h5 as of release 1.8.0-alpha4
+TOOLTEST h5stat_filters.ddl h5stat_filters.h5
+TOOLTEST h5stat_filters-file.ddl -f h5stat_filters.h5
+TOOLTEST h5stat_filters-F.ddl -F h5stat_filters.h5
+TOOLTEST h5stat_filters-d.ddl -d h5stat_filters.h5
+TOOLTEST h5stat_filters-g.ddl -g h5stat_filters.h5
+TOOLTEST h5stat_filters-dT.ddl -dT h5stat_filters.h5
+# h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c
+# as of release 1.8.0-alpha4
+TOOLTEST h5stat_tsohm.ddl h5stat_tsohm.h5
+# h5stat_newgrat.h5 is generated by h5stat_gentest.c
+TOOLTEST h5stat_newgrat.ddl h5stat_newgrat.h5
+echo
+
+
+if test $nerrors -eq 0 ; then
+ echo "All $STAT tests passed."
+fi
+
+exit $nerrors
+
diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am
index fc097cd..46dd8b7 100644
--- a/tools/misc/Makefile.am
+++ b/tools/misc/Makefile.am
@@ -24,15 +24,15 @@ include $(top_srcdir)/config/commence.am
INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
#test script and program
-TEST_PROG=h5repart_gentest h5stat_gentest
-TEST_SCRIPT=testh5repart.sh testh5stat.sh $(srcdir)/testh5mkgrp.sh
+TEST_PROG=h5repart_gentest
+TEST_SCRIPT=testh5repart.sh $(srcdir)/testh5mkgrp.sh
check_PROGRAMS=$(TEST_PROG) repart_test
check_SCRIPTS=$(TEST_SCRIPT)
-SCRIPT_DEPEND=h5repart$(EXEEXT) h5stat$(EXEEXT) h5mkgrp$(EXEEXT)
+SCRIPT_DEPEND=h5repart$(EXEEXT) h5mkgrp$(EXEEXT)
# These are our main targets, the tools
-bin_PROGRAMS=h5debug h5repart h5stat h5mkgrp
+bin_PROGRAMS=h5debug h5repart h5mkgrp
bin_SCRIPTS=h5redeploy
# Tell automake to clean h5redeploy script
@@ -44,7 +44,7 @@ CLEANFILES=h5redeploy
CHECK_CLEANFILES+=*.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5
# These were generated by configure. Remove them only when distclean.
-DISTCLEANFILES=h5cc testh5repart.sh testh5stat.sh
+DISTCLEANFILES=h5cc testh5repart.sh
# All programs rely on hdf5 library and h5tools library
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index c8022c7..44d54c0 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -52,11 +52,10 @@ build_triplet = @build@
host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(srcdir)/h5cc.in $(srcdir)/testh5repart.sh.in \
- $(srcdir)/testh5stat.sh.in $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
check_PROGRAMS = $(am__EXEEXT_1) repart_test$(EXEEXT)
-bin_PROGRAMS = h5debug$(EXEEXT) h5repart$(EXEEXT) h5stat$(EXEEXT) \
- h5mkgrp$(EXEEXT)
+bin_PROGRAMS = h5debug$(EXEEXT) h5repart$(EXEEXT) h5mkgrp$(EXEEXT)
TESTS = $(check_PROGRAMS) $(check_SCRIPTS)
subdir = tools/misc
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
@@ -65,10 +64,10 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/src/H5config.h
-CONFIG_CLEAN_FILES = h5cc testh5repart.sh testh5stat.sh
+CONFIG_CLEAN_FILES = h5cc testh5repart.sh
am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)"
binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
-am__EXEEXT_1 = h5repart_gentest$(EXEEXT) h5stat_gentest$(EXEEXT)
+am__EXEEXT_1 = h5repart_gentest$(EXEEXT)
PROGRAMS = $(bin_PROGRAMS)
h5debug_SOURCES = h5debug.c
h5debug_OBJECTS = h5debug.$(OBJEXT)
@@ -86,14 +85,6 @@ h5repart_gentest_SOURCES = h5repart_gentest.c
h5repart_gentest_OBJECTS = h5repart_gentest.$(OBJEXT)
h5repart_gentest_LDADD = $(LDADD)
h5repart_gentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
-h5stat_SOURCES = h5stat.c
-h5stat_OBJECTS = h5stat.$(OBJEXT)
-h5stat_LDADD = $(LDADD)
-h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
-h5stat_gentest_SOURCES = h5stat_gentest.c
-h5stat_gentest_OBJECTS = h5stat_gentest.$(OBJEXT)
-h5stat_gentest_LDADD = $(LDADD)
-h5stat_gentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
repart_test_SOURCES = repart_test.c
repart_test_OBJECTS = repart_test.$(OBJEXT)
repart_test_LDADD = $(LDADD)
@@ -112,10 +103,10 @@ CCLD = $(CC)
LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
$(LDFLAGS) -o $@
-SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c h5stat.c \
- h5stat_gentest.c repart_test.c
+SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \
+ repart_test.c
DIST_SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \
- h5stat.c h5stat_gentest.c repart_test.c
+ repart_test.c
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
@@ -356,17 +347,17 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 \
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
#test script and program
-TEST_PROG = h5repart_gentest h5stat_gentest
-TEST_SCRIPT = testh5repart.sh testh5stat.sh $(srcdir)/testh5mkgrp.sh
+TEST_PROG = h5repart_gentest
+TEST_SCRIPT = testh5repart.sh $(srcdir)/testh5mkgrp.sh
check_SCRIPTS = $(TEST_SCRIPT)
-SCRIPT_DEPEND = h5repart$(EXEEXT) h5stat$(EXEEXT) h5mkgrp$(EXEEXT)
+SCRIPT_DEPEND = h5repart$(EXEEXT) h5mkgrp$(EXEEXT)
bin_SCRIPTS = h5redeploy
# Tell automake to clean h5redeploy script
CLEANFILES = h5redeploy
# These were generated by configure. Remove them only when distclean.
-DISTCLEANFILES = h5cc testh5repart.sh testh5stat.sh
+DISTCLEANFILES = h5cc testh5repart.sh
# All programs rely on hdf5 library and h5tools library
LDADD = $(LIBH5TOOLS) $(LIBHDF5)
@@ -428,8 +419,6 @@ h5cc: $(top_builddir)/config.status $(srcdir)/h5cc.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
testh5repart.sh: $(top_builddir)/config.status $(srcdir)/testh5repart.sh.in
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
-testh5stat.sh: $(top_builddir)/config.status $(srcdir)/testh5stat.sh.in
- cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
install-binPROGRAMS: $(bin_PROGRAMS)
@$(NORMAL_INSTALL)
test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
@@ -477,12 +466,6 @@ h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES)
h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES)
@rm -f h5repart_gentest$(EXEEXT)
$(LINK) $(h5repart_gentest_OBJECTS) $(h5repart_gentest_LDADD) $(LIBS)
-h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES)
- @rm -f h5stat$(EXEEXT)
- $(LINK) $(h5stat_OBJECTS) $(h5stat_LDADD) $(LIBS)
-h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES)
- @rm -f h5stat_gentest$(EXEEXT)
- $(LINK) $(h5stat_gentest_OBJECTS) $(h5stat_gentest_LDADD) $(LIBS)
repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES)
@rm -f repart_test$(EXEEXT)
$(LINK) $(repart_test_OBJECTS) $(repart_test_LDADD) $(LIBS)
@@ -516,8 +499,6 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5mkgrp.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repart.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repart_gentest.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5stat.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5stat_gentest.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/repart_test.Po@am__quote@
.c.o:
diff --git a/tools/misc/h5stat.c b/tools/misc/h5stat.c
deleted file mode 100644
index 8f29519..0000000
--- a/tools/misc/h5stat.c
+++ /dev/null
@@ -1,1377 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include <stdlib.h>
-#include <string.h>
-#include "H5private.h" /* Generic Functions */
-#include "h5tools.h"
-#include "h5tools_utils.h"
-#include "h5tools_ref.h"
-#include "h5trav.h"
-#include "hdf5.h"
-
-/* Parameters to control statistics gathered */
-#define SIZE_SMALL_GROUPS 10
-#define SIZE_SMALL_ATTRS 10
-#define SIZE_SMALL_DSETS 10
-
-#define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to
- accommodate for user-define filters + one
- to accomodate datasets whithout any filters */
-
-
-
-/* Datatype statistics for datasets */
-typedef struct dtype_info_t {
- hid_t tid; /* ID of datatype */
- unsigned long count; /* Number of types found */
- unsigned long named; /* Number of types that are named */
-} dtype_info_t;
-
-typedef struct ohdr_info_t {
- hsize_t total_size; /* Total size of object headers */
- hsize_t free_size; /* Total free space in object headers */
-} ohdr_info_t;
-
-/* Info to pass to the iteration functions */
-typedef struct iter_t {
- const char *container; /* Full name of the container object */
- unsigned long curr_depth; /* Current depth of hierarchy */
-
- unsigned long uniq_groups; /* Number of unique groups */
- unsigned long uniq_dsets; /* Number of unique datasets */
- unsigned long uniq_types; /* Number of unique named datatypes */
- unsigned long uniq_links; /* Number of unique links */
- unsigned long uniq_others; /* Number of other unique objects */
-
- unsigned long max_depth; /* Maximum depth of hierarchy */
- unsigned long max_links; /* Maximum # of links to an object */
- hsize_t max_fanout; /* Maximum fanout from a group */
- unsigned long num_small_groups[SIZE_SMALL_GROUPS]; /* Size of small groups tracked */
- unsigned group_nbins; /* Number of bins for group counts */
- unsigned long *group_bins; /* Pointer to array of bins for group counts */
- ohdr_info_t group_ohdr_info; /* Object header information for groups */
-
- hsize_t max_attrs; /* Maximum attributes from a group */
- unsigned long num_small_attrs[SIZE_SMALL_ATTRS]; /* Size of small attributes tracked */
- unsigned attr_nbins;
- unsigned long *attr_bins;
-
- unsigned long max_dset_rank; /* Maximum rank of dataset */
- unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */
- hsize_t max_dset_dims; /* Maximum dimension size of dataset */
- unsigned long small_dset_dims[SIZE_SMALL_DSETS]; /* Size of dimensions of small datasets tracked */
- unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */
- unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
- unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */
- dtype_info_t *dset_type_info; /* Pointer to dataset datatype information found */
- unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */
- unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */
- ohdr_info_t dset_ohdr_info; /* Object header information for datasets */
- hsize_t dset_storage_size; /* Size of raw data for datasets */
- hsize_t groups_btree_storage_size; /* btree size for group */
- hsize_t groups_heap_storage_size; /* heap size for group */
- hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */
- hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */
- hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */
- hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */
- hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */
- hsize_t super_ext_size; /* superblock extension size */
- hsize_t datasets_btree_storage_size; /* btree size for chunked dataset */
- unsigned long nexternal; /* Number of external files for a dataset */
- int local; /* Flag to indicate iteration over the object*/
-} iter_t;
-
-
-/* Table containing object id and object name */
-static struct {
- int nalloc; /* number of slots allocated */
- int nobjs; /* number of objects */
- struct {
- haddr_t id; /* object number */
- char *name; /* full object name */
- } *obj;
-} idtab_g;
-
-const char *progname = "h5stat";
-int d_status = EXIT_SUCCESS;
-static int display_all = TRUE;
-static int display_file_metadata = FALSE;
-static int display_file = FALSE;
-static int display_group_metadata = FALSE;
-static int display_group = FALSE;
-static int display_dset_metadata = FALSE;
-static int display_dset = FALSE;
-static int display_dtype_metadata = FALSE;
-/* Not used yet 11/17/06 EIP
-static int display_dtype = FALSE;
-*/
-static int display_object = FALSE;
-static int display_attr = FALSE;
-
-/* a structure for handling the order command-line parameters come in */
-struct handler_t {
- void (*func)(void *);
- int flag;
- char *obj;
-};
-
-
-static const char *s_opts ="AFfhGgDdTO:V";
-static struct long_options l_opts[] = {
- {"help", no_arg, 'h'},
- {"hel", no_arg, 'h'},
- {"file", no_arg, 'f'},
- {"fil", no_arg, 'f'},
- {"fi", no_arg, 'f'},
- {"FILEmetadata", no_arg, 'F'},
- {"FILEmetadat", no_arg, 'F'},
- {"FILEmetada", no_arg, 'F'},
- {"FILEmetad", no_arg, 'F'},
- {"FILEmeta", no_arg, 'F'},
- {"FILEmet", no_arg, 'F'},
- {"FILEme", no_arg, 'F'},
- {"FILEm", no_arg, 'F'},
- {"group", no_arg, 'g'},
- {"grou", no_arg, 'g'},
- {"gro", no_arg, 'g'},
- {"gr", no_arg, 'g'},
- {"groupmetadata", no_arg, 'G'},
- {"groupmetadat", no_arg, 'G'},
- {"groupmetada", no_arg, 'G'},
- {"groupmetad", no_arg, 'G'},
- {"groupmeta", no_arg, 'G'},
- {"groupmet", no_arg, 'G'},
- {"groupme", no_arg, 'G'},
- {"groupm", no_arg, 'G'},
- {"dset", no_arg, 'd'},
- {"dse", no_arg, 'd'},
- {"ds", no_arg, 'd'},
- {"d", no_arg, 'd'},
- {"dsetmetadata", no_arg, 'D'},
- {"dsetmetadat", no_arg, 'D'},
- {"dsetmetada", no_arg, 'D'},
- {"dsetmetad", no_arg, 'D'},
- {"dsetmeta", no_arg, 'D'},
- {"dsetmet", no_arg, 'D'},
- {"dsetme", no_arg, 'D'},
- {"dsetm", no_arg, 'D'},
- {"dtypemetadata", no_arg, 'T'},
- {"dtypemetadat", no_arg, 'T'},
- {"dtypemetada", no_arg, 'T'},
- {"dtypemetad", no_arg, 'T'},
- {"dtypemeta", no_arg, 'T'},
- {"dtypemet", no_arg, 'T'},
- {"dtypeme", no_arg, 'T'},
- {"dtypem", no_arg, 'T'},
- {"dtype", no_arg, 'T'},
- { "object", require_arg, 'O' },
- { "objec", require_arg, 'O' },
- { "obje", require_arg, 'O' },
- { "obj", require_arg, 'O' },
- { "ob", require_arg, 'O' },
- { "version", no_arg, 'V' },
- { "versio", no_arg, 'V' },
- { "versi", no_arg, 'V' },
- { "vers", no_arg, 'V' },
- { "ver", no_arg, 'V' },
- { "ve", no_arg, 'V' },
- { "attribute", no_arg, 'A' },
- { "attribut", no_arg, 'A' },
- { "attribu", no_arg, 'A' },
- { "attrib", no_arg, 'A' },
- { "attri", no_arg, 'A' },
- { "attr", no_arg, 'A' },
- { "att", no_arg, 'A' },
- { "at", no_arg, 'A' },
- { "a", no_arg, 'A' },
- { NULL, 0, '\0' }
-};
-
-static void
-leave(int ret)
-{
- h5tools_close();
- exit(ret);
-}
-
-
-static void usage(const char *prog)
-{
- fflush(stdout);
- fprintf(stdout, "\n");
- fprintf(stdout, "This tool is under development. For detailed information\n");
- fprintf(stdout, "please see the specification document at\n");
- fprintf(stdout, "http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf\n");
- fprintf(stdout, "\n");
- fprintf(stdout, "Please send your comments and questions to help@hdfgroup.org\n");
- fprintf(stdout, "\n");
- fprintf(stdout, "Usage: %s [OPTIONS] file\n", prog);
- fprintf(stdout, "\n");
- fprintf(stdout, " OPTIONS\n");
- fprintf(stdout, " -h, --help Print a usage message and exit\n");
- fprintf(stdout, " -V, --version Print version number and exit\n");
- fprintf(stdout, " -f, --file Print file information\n");
- fprintf(stdout, " -F, --filemetadata Print file metadata\n");
- fprintf(stdout, " -g, --group Print group information\n");
- fprintf(stdout, " -G, --groupmetadata Print group metadata\n");
- fprintf(stdout, " -d, --dset Print dataset information\n");
- fprintf(stdout, " -D, --dsetmetadata Print dataset metadata\n");
- fprintf(stdout, " -T, --dtypemetadata Print datatype metadata\n");
- fprintf(stdout, " -A, --attribute Print attribute information\n");
- fprintf(stdout, "\n");
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: ceil_log10
- *
- * Purpose: Compute the ceiling of log_10(x)
- *
- * Return: >0 on success, 0 on failure
- *
- * Programmer: Quincey Koziol
- * Monday, August 22, 2005
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static unsigned
-ceil_log10(unsigned long x)
-{
- unsigned long pow10 = 1;
- unsigned ret = 0;
-
- while(x >= pow10) {
- pow10 *= 10;
- ret++;
- } /* end while */
-
- return(ret);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: sym_insert
- *
- * Purpose: Add a symbol to the table.
- *
- * Return: void
- *
- * Programmer: Robb Matzke
- * Thursday, January 21, 1999
- *
- *-------------------------------------------------------------------------
- */
-static void
-sym_insert(H5O_info_t *oi, const char *name)
-{
- /* Don't add it if the link count is 1 because such an object can only
- * have one name. */
- if(oi->rc > 1) {
- int n;
-
- /* Extend the table */
- if(idtab_g.nobjs >= idtab_g.nalloc) {
- idtab_g.nalloc = MAX(256, 2 * idtab_g.nalloc);
- idtab_g.obj = realloc(idtab_g.obj, idtab_g.nalloc * sizeof(idtab_g.obj[0]));
- } /* end if */
-
- /* Insert the entry */
- n = idtab_g.nobjs++;
- idtab_g.obj[n].id = oi->addr;
- idtab_g.obj[n].name = strdup(name);
- } /* end if */
-} /* end sym_insert() */
-
-
-/*-------------------------------------------------------------------------
- * Function: sym_lookup
- *
- * Purpose: Find another name for the specified object.
- *
- * Return: Success: Ptr to another name.
- *
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * Thursday, January 21, 1999
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static char *
-sym_lookup(H5O_info_t *oi)
-{
- int n;
-
- /*only one name possible*/
- if(oi->rc < 2)
- return NULL;
-
- for(n = 0; n < idtab_g.nobjs; n++)
- if(idtab_g.obj[n].id == oi->addr)
- return idtab_g.obj[n].name;
-
- return NULL;
-} /* end sym_lookup() */
-
-
-/*-------------------------------------------------------------------------
- * Function: fix_name
- *
- * Purpose: Returns a malloc'd buffer that contains the PATH and BASE
- * names separated by a single slash. It also removes duplicate
- * and trailing slashes.
- *
- * Return: Success: Ptr to fixed name from malloc()
- *
- * Failure: NULL
- *
- * Programmer: Robb Matzke
- * Thursday, January 21, 1999
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static char *
-fix_name(const char *path, const char *base)
-{
- size_t n = (path ? strlen(path) : 0) + (base ? strlen(base) : 0) + 3;
- char *s = malloc(n), prev='\0';
- size_t len = 0;
-
- if (path) {
- /* Path, followed by slash */
- for (/*void*/; *path; path++)
- if ('/'!=*path || '/'!=prev)
- prev = s[len++] = *path;
- if ('/' != prev)
- prev = s[len++] = '/';
- }
-
- if (base) {
- /* Base name w/o trailing slashes */
- const char *end = base + strlen(base);
- while (end > base && '/' == end[-1])
- --end;
-
- for (/*void*/; base < end; base++)
- if ('/' != *base || '/' != prev)
- prev = s[len++] = *base;
- }
-
- s[len] = '\0';
- return s;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: attribute_stats
- *
- * Purpose: Gather statistics about attributes on an object
- *
- * Return: Success: 0
- *
- * Failure: -1
- *
- * Programmer: Quincey Koziol
- * Tuesday, July 17, 2007
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-attribute_stats(iter_t *iter, const H5O_info_t *oi)
-{
- unsigned bin; /* "bin" the number of objects falls in */
-
- /* Update dataset & attribute metadata info */
- iter->attrs_btree_storage_size += oi->meta_size.attr.index_size;
- iter->attrs_heap_storage_size += oi->meta_size.attr.heap_size;
-
- /* Update small # of attribute count & limits */
- if(oi->num_attrs < SIZE_SMALL_ATTRS)
- (iter->num_small_attrs[(size_t)oi->num_attrs])++;
- if(oi->num_attrs > iter->max_attrs)
- iter->max_attrs = oi->num_attrs;
-
- /* Add attribute count to proper bin */
- bin = ceil_log10((unsigned long)oi->num_attrs);
- if((bin + 1) > iter->attr_nbins) {
- iter->attr_bins = realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long));
- assert(iter->attr_bins);
-
- /* Initialize counts for intermediate bins */
- while(iter->attr_nbins < bin)
- iter->attr_bins[iter->attr_nbins++] = 0;
- iter->attr_nbins++;
-
- /* Initialize count for new bin */
- iter->attr_bins[bin] = 1;
- } /* end if */
- else
- (iter->attr_bins[bin])++;
-
- return 0;
-} /* end attribute_stats() */
-
-
-/*-------------------------------------------------------------------------
- * Function: group_stats
- *
- * Purpose: Gather statistics about the group
- *
- * Return: Success: 0
- *
- * Failure: -1
- *
- * Programmer: Quincey Koziol
- * Tuesday, August 16, 2005
- *
- * Modifications: Refactored code from the walk_function
- * EIP, Wednesday, August 16, 2006
- *
- * Vailin Choi 12 July 2007
- * 1. Gathered storage info for btree and heap
- * (groups and attributes)
- * 2. Gathered info for attributes
- *
- * Vailin Choi 14 July 2007
- * Cast "num_objs" and "num_attrs" to size_t
- * Due to the -Mbounds problem for the pgi-32 bit compiler on indexing
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-group_stats(hid_t group, const char *name, const char *fullname,
- const H5O_info_t *oi, H5G_iterate_t walk, iter_t *iter)
-{
- hid_t gid; /* Group ID */
- const char *last_container;
- hsize_t num_objs;
- unsigned bin; /* "bin" the number of objects falls in */
- herr_t ret;
-
- /* Gather statistics about this type of object */
- iter->uniq_groups++;
- if(iter->curr_depth > iter->max_depth)
- iter->max_depth = iter->curr_depth;
-
- /* Get object header information */
- iter->group_ohdr_info.total_size += oi->hdr.space.total;
- iter->group_ohdr_info.free_size += oi->hdr.space.free;
-
- gid = H5Gopen(group, name);
- assert(gid > 0);
-
- /* Get number of links in this group */
- ret = H5Gget_num_objs(gid, &num_objs);
- assert(ret >= 0);
-
- /* Update link stats */
- if(num_objs < SIZE_SMALL_GROUPS)
- (iter->num_small_groups[(size_t)num_objs])++;
- if(num_objs > iter->max_fanout)
- iter->max_fanout = num_objs;
-
- /* Add group count to proper bin */
- bin = ceil_log10((unsigned long)num_objs);
- if((bin + 1) > iter->group_nbins) {
- /* Allocate more storage for info about dataset's datatype */
- iter->group_bins = realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long));
- assert(iter->group_bins);
-
- /* Initialize counts for intermediate bins */
- while(iter->group_nbins < bin)
- iter->group_bins[iter->group_nbins++] = 0;
- iter->group_nbins++;
-
- /* Initialize count for new bin */
- iter->group_bins[bin] = 1;
- } /* end if */
- else
- (iter->group_bins[bin])++;
-
- /* Update group metadata info */
- iter->groups_btree_storage_size += oi->meta_size.obj.index_size;
- iter->groups_heap_storage_size += oi->meta_size.obj.heap_size;
-
- /* Update attribute metadata info */
- ret = attribute_stats(iter, oi);
- assert(ret >= 0);
-
- /* Close current group */
- ret = H5Gclose(gid);
- assert(ret >= 0);
-
- /* Update current container info */
- last_container = iter->container;
- iter->container = fullname;
- iter->curr_depth++;
-
- /* Recursively descend into current group's objects */
- H5Giterate(group, name, NULL, walk, iter);
-
- /* Revert current container info */
- iter->container = last_container;
- iter->curr_depth--;
-
- return 0;
-} /* end group_stats() */
-
-
-/*-------------------------------------------------------------------------
- * Function: dataset_stats
- *
- * Purpose: Gather statistics about the dataset
- *
- * Return: Success: 0
- *
- * Failure: -1
- *
- * Programmer: Quincey Koziol
- * Tuesday, August 16, 2005
- *
- * Modifications: Refactored code from the walk_function
- * EIP, Wednesday, August 16, 2006
- *
- * Vailin Choi 12 July 2007
- * 1. Gathered storage info for btree and heap
- * (chunked datasets and attributes)
- * 2. Gathered info for attributes
- *
- * Vailin Choi 14 July 2007
- * Cast "dims" and "num_attrs" to size_t
- * Due to the -Mbounds problem for the pgi-32bit compiler on indexing
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-dataset_stats(hid_t group, const char *name, const H5O_info_t *oi, iter_t *iter)
-{
- unsigned bin; /* "bin" the number of objects falls in */
- hid_t did; /* Dataset ID */
- hid_t sid; /* Dataspace ID */
- hid_t tid; /* Datatype ID */
- hid_t dcpl; /* Dataset creation property list ID */
- hsize_t dims[H5S_MAX_RANK];/* Dimensions of dataset */
- H5D_layout_t lout; /* Layout of dataset */
- unsigned type_found; /* Whether the dataset's datatype was */
- /* already found */
- int ndims; /* Number of dimensions of dataset */
- hsize_t storage; /* Size of dataset storage */
- unsigned u; /* Local index variable */
- int num_ext; /* Number of external files for a dataset */
- int nfltr; /* Number of filters for a dataset */
- H5Z_filter_t fltr; /* Filter identifier */
- herr_t ret;
-
- /* Gather statistics about this type of object */
- iter->uniq_dsets++;
-
- /* Get object header information */
- iter->dset_ohdr_info.total_size += oi->hdr.space.total;
- iter->dset_ohdr_info.free_size += oi->hdr.space.free;
-
- did = H5Dopen(group, name);
- assert(did > 0);
-
- /* Update dataset metadata info */
- iter->datasets_btree_storage_size += oi->meta_size.obj.index_size;
-
- /* Update attribute metadata info */
- ret = attribute_stats(iter, oi);
- assert(ret >= 0);
-
- /* Get storage info */
- storage = H5Dget_storage_size(did);
- iter->dset_storage_size += storage;
-
- /* Gather dataspace statistics */
- sid = H5Dget_space(did);
- assert(sid > 0);
-
- ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
- assert(ndims >= 0);
-
- /* Check for larger rank of dataset */
- if((unsigned)ndims > iter->max_dset_rank)
- iter->max_dset_rank = ndims;
-
- /* Track the number of datasets with each rank */
- (iter->dset_rank_count[ndims])++;
-
- /* Only gather dim size statistics on 1-D datasets */
- if(ndims == 1) {
- iter->max_dset_dims = dims[0];
- if(dims[0] < SIZE_SMALL_DSETS)
- (iter->small_dset_dims[(size_t)dims[0]])++;
-
- /* Add dim count to proper bin */
- bin = ceil_log10((unsigned long)dims[0]);
- if((bin + 1) > iter->dset_dim_nbins) {
- /* Allocate more storage for info about dataset's datatype */
- iter->dset_dim_bins = realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long));
- assert(iter->dset_dim_bins);
-
- /* Initialize counts for intermediate bins */
- while(iter->dset_dim_nbins < bin)
- iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
- iter->dset_dim_nbins++;
-
- /* Initialize count for this bin */
- iter->dset_dim_bins[bin] = 1;
- } /* end if */
- else
- (iter->dset_dim_bins[bin])++;
- } /* end if */
-
- ret = H5Sclose(sid);
- assert(ret >= 0);
-
- /* Gather datatype statistics */
- tid = H5Dget_type(did);
- assert(tid > 0);
-
- type_found = FALSE;
- for(u = 0; u < iter->dset_ntypes; u++)
- if(H5Tequal(iter->dset_type_info[u].tid, tid) > 0) {
- type_found = TRUE;
- break;
- } /* end for */
- if(type_found)
- (iter->dset_type_info[u].count)++;
- else {
- unsigned curr_ntype = iter->dset_ntypes;
-
- /* Increment # of datatypes seen for datasets */
- iter->dset_ntypes++;
-
- /* Allocate more storage for info about dataset's datatype */
- iter->dset_type_info = realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t));
- assert(iter->dset_type_info);
-
- /* Initialize information about datatype */
- iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid);
- assert(iter->dset_type_info[curr_ntype].tid > 0);
- iter->dset_type_info[curr_ntype].count = 1;
- iter->dset_type_info[curr_ntype].named = 0;
-
- /* Set index for later */
- u = curr_ntype;
- } /* end else */
-
- /* Check if the datatype is a named datatype */
- if(H5Tcommitted(tid) > 0)
- (iter->dset_type_info[u].named)++;
-
- ret = H5Tclose(tid);
- assert(ret >= 0);
-
- /* Gather layout statistics */
- dcpl = H5Dget_create_plist(did);
- assert(dcpl > 0);
-
- lout = H5Pget_layout(dcpl);
- assert(lout >= 0);
-
- /* Track the layout type for dataset */
- (iter->dset_layouts[lout])++;
-
- num_ext = H5Pget_external_count(dcpl);
- assert (num_ext >= 0);
-
- if(num_ext)
- iter->nexternal = iter->nexternal + num_ext;
-
- /* Track different filters */
- if((nfltr = H5Pget_nfilters(dcpl)) >= 0) {
- if(nfltr == 0)
- iter->dset_comptype[0]++;
- for(u = 0; u < (unsigned)nfltr; u++) {
-#ifdef H5_WANT_H5_V1_6_COMPAT
- fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0);
-#else /* H5_WANT_H5_V1_6_COMPAT */
- fltr = H5Pget_filter(dcpl, u, 0, 0, 0, 0, 0, NULL);
-#endif /* H5_WANT_H5_V1_6_COMPAT */
- if(fltr < (H5_NFILTERS_IMPL - 1))
- iter->dset_comptype[fltr]++;
- else
- iter->dset_comptype[H5_NFILTERS_IMPL - 1]++; /*other filters*/
- } /* end for */
- } /* endif nfltr */
-
- ret = H5Pclose(dcpl);
- assert(ret >= 0);
-
- ret = H5Dclose(did);
- assert(ret >= 0);
-
- return 0;
-} /* end dataset_stats() */
-
-
-/*-------------------------------------------------------------------------
- * Function: walk
- *
- * Purpose: Gather statistics about the file
- *
- * Return: Success: 0
- * Failure: -1
- *
- * Programmer: Quincey Koziol
- * Tuesday, August 16, 2005
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-walk(hid_t group, const char *name, void *_iter)
-{
- iter_t *iter = (iter_t *)_iter;
- H5O_info_t oi;
- char *fullname = NULL;
- char *s;
- herr_t ret; /* Generic return value */
-
- /* Get the full object name */
- fullname = fix_name(iter->container, name);
-
- /* Get object information */
- ret = H5Oget_info(group, name, &oi, H5P_DEFAULT);
- assert(ret >= 0);
-
- /* If the object has already been printed then just show the object ID
- * and return. */
- if((s = sym_lookup(&oi))) {
- printf("%s same as %s\n", name, s);
- } else {
- sym_insert(&oi, fullname);
-
- /* Gather some statistics about the object */
- if(oi.rc > iter->max_links)
- iter->max_links = oi.rc;
-
- switch(oi.type) {
- case H5G_GROUP:
- group_stats(group, name, fullname, &oi, walk, iter);
- break;
-
- case H5G_DATASET:
- dataset_stats(group, name, &oi, iter);
- break;
-
- case H5G_TYPE:
- /* Gather statistics about this type of object */
- iter->uniq_types++;
- break;
-
- case H5G_LINK:
- /* Gather statistics about links and UD links */
- iter->uniq_links++;
- break;
-
- default:
- /* Gather statistics about this type of object */
- iter->uniq_others++;
- break;
- } /* end switch */
- }
-
- if(fullname)
- free(fullname);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: parse_command_line
- *
- * Purpose: Parses command line and sets up global variable to control output
- *
- * Return: Success: 0
- *
- * Failure: -1
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- * Vailin Choi 12 July 2007
- * Added 'A' option to display attribute info
- *
- *-------------------------------------------------------------------------
- */
-static struct handler_t *
-parse_command_line(int argc, const char *argv[])
-{
- int opt, i;
- struct handler_t *hand;
-
- /* Allocate space to hold the command line info */
- hand = calloc((size_t)argc, sizeof(struct handler_t));
-
- /* parse command line options */
- while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
- switch ((char)opt) {
- case 'A':
- display_all = FALSE;
- display_attr = TRUE;
- break;
- case 'F':
- display_all = FALSE;
- display_file_metadata = TRUE;
- break;
- case 'f':
- display_all = FALSE;
- display_file = TRUE;
- break;
- case 'G':
- display_all = FALSE;
- display_group_metadata = TRUE;
- break;
- case 'g':
- display_all = FALSE;
- display_group = TRUE;
- break;
- case 'T':
- display_all = FALSE;
- display_dtype_metadata = TRUE;
- break;
- case 'D':
- display_all = FALSE;
- display_dset_metadata = TRUE;
- break;
- case 'd':
- display_all = FALSE;
- display_dset = TRUE;
- break;
- case 'h':
- usage(progname);
- leave(EXIT_SUCCESS);
- case 'V':
- print_version(progname);
- leave(EXIT_SUCCESS);
- break;
- case 'O':
- display_object = TRUE;
- for (i = 0; i < argc; i++)
- if (!hand[i].obj) {
- hand[i].obj = HDstrdup(opt_arg);
- hand[i].flag = 1;
- break;
- }
- break;
- default:
- usage(progname);
- leave(EXIT_FAILURE);
- }
- }
-
- /* check for file name to be processed */
- if (argc <= opt_ind) {
- error_msg(progname, "missing file name\n");
- usage(progname);
- leave(EXIT_FAILURE);
- }
- return hand;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: init_iter
- *
- * Purpose: Initialize iter structure
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-iter_init(iter_t *iter)
-{
- /* Clear everything to zeros */
- memset(iter, 0, sizeof(*iter));
-
- /* Initialize non-zero information */
- iter->container = "/";
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_file_info
- *
- * Purpose: Prints information about file
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-print_file_info(const iter_t *iter)
-{
- printf("File information\n");
- printf("\t# of unique groups: %lu\n", iter->uniq_groups);
- printf("\t# of unique datasets: %lu\n", iter->uniq_dsets);
- printf("\t# of unique named dataypes: %lu\n", iter->uniq_types);
- printf("\t# of unique links: %lu\n", iter->uniq_links);
- printf("\t# of unique other: %lu\n", iter->uniq_others);
- printf("\tMax. # of links to object: %lu\n", iter->max_links);
- printf("\tMax. depth of hierarchy: %lu\n", iter->max_depth);
- HDfprintf(stdout, "\tMax. # of objects in group: %Hu\n", iter->max_fanout);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_file_metadata
- *
- * Purpose: Prints metadata information about file
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- * Vailin Choi 12 July 2007
- * Print storage info for:
- * 1. btree/heap storage for groups and attributes
- * 2. btree storage for chunked dataset
- * 3. hdr/btree/list/heap storage for SOHM table
- * 4. superblock extension size
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-print_file_metadata(const iter_t *iter)
-{
- printf("Object header size: (total/unused)\n");
- HDfprintf(stdout, "\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size,
- iter->group_ohdr_info.free_size);
- HDfprintf(stdout, "\tDatasets: %Hu/%Hu\n", iter->dset_ohdr_info.total_size,
- iter->dset_ohdr_info.free_size);
-
- printf("Storage information:\n");
- HDfprintf(stdout, "\tGroups:\n");
- HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size);
- HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->groups_heap_storage_size);
-
- HDfprintf(stdout, "\tAttributes:\n");
- HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->attrs_btree_storage_size);
- HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->attrs_heap_storage_size);
-
- HDfprintf(stdout, "\tChunked datasets:\n");
- HDfprintf(stdout, "\t\tB-tree: %Hu\n", iter->datasets_btree_storage_size);
-
- HDfprintf(stdout, "\tShared Messages:\n");
- HDfprintf(stdout, "\t\tHeader: %Hu\n", iter->SM_hdr_storage_size);
- HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->SM_index_storage_size);
- HDfprintf(stdout, "\t\tHeap: %Hu\n", iter->SM_heap_storage_size);
-
- HDfprintf(stdout, "\tSuperblock extension: %Hu\n", iter->super_ext_size);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_group_info
- *
- * Purpose: Prints information about groups in the file
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-print_group_info(const iter_t *iter)
-{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
-
- printf("Small groups:\n");
- total = 0;
- for(u = 0; u < SIZE_SMALL_GROUPS; u++) {
- if(iter->num_small_groups[u] > 0) {
- printf("\t# of groups of size %u: %lu\n", u, iter->num_small_groups[u]);
- total += iter->num_small_groups[u];
- } /* end if */
- } /* end for */
- printf("\tTotal # of small groups: %lu\n", total);
-
- printf("Group bins:\n");
- total = 0;
- if(iter->group_bins[0] > 0) {
- printf("\t# of groups of size 0: %lu\n", iter->group_bins[0]);
- total = iter->group_bins[0];
- } /* end if */
- power = 1;
- for(u = 1; u < iter->group_nbins; u++) {
- if(iter->group_bins[u] > 0) {
- printf("\t# of groups of size %lu - %lu: %lu\n", power, (power * 10) - 1,
- iter->group_bins[u]);
- total += iter->group_bins[u];
- } /* end if */
- power *= 10;
- } /* end for */
- printf("\tTotal # of groups: %lu\n", total);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_attr_info
- *
- * Purpose: Prints information about attributes in the file
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Vailin Choi
- * July 12, 2007
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-print_attr_info(const iter_t *iter)
-{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
-
- printf("Small # of attributes:\n");
- total = 0;
- for(u = 1; u < SIZE_SMALL_ATTRS; u++) {
- if(iter->num_small_attrs[u] > 0) {
- printf("\t# of objects with %u attributes: %lu\n", u, iter->num_small_attrs[u]);
- total += iter->num_small_attrs[u];
- } /* end if */
- } /* end for */
- printf("\tTotal # of objects with small # of attributes: %lu\n", total);
-
- printf("Attribute bins:\n");
- total = 0;
- power = 1;
- for(u = 1; u < iter->attr_nbins; u++) {
- if(iter->attr_bins[u] > 0) {
- printf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1,
- iter->attr_bins[u]);
- total += iter->attr_bins[u];
- } /* end if */
- power *= 10;
- } /* end for */
- printf("\tTotal # of objects with attributes: %lu\n", total);
- printf("\tMax. # of attributes to objects: %lu\n", (unsigned long)iter->max_attrs);
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_dataset_info
- *
- * Purpose: Prints information about datasets in the file
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-print_dataset_info(const iter_t *iter)
-{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- size_t dtype_size; /* Size of encoded datatype */
- unsigned u; /* Local index variable */
-
- if(iter->uniq_dsets > 0) {
- printf("Dataset dimension information:\n");
- printf("\tMax. rank of datasets: %lu\n", iter->max_dset_rank);
- printf("\tDataset ranks:\n");
- for(u = 0; u < H5S_MAX_RANK; u++)
- if(iter->dset_rank_count[u] > 0)
- printf("\t\t# of dataset with rank %u: %lu\n", u, iter->dset_rank_count[u]);
-
- printf("1-D Dataset information:\n");
- HDfprintf(stdout, "\tMax. dimension size of 1-D datasets: %Hu\n", iter->max_dset_dims);
- printf("\tSmall 1-D datasets:\n");
- total = 0;
- for(u = 0; u < SIZE_SMALL_DSETS; u++) {
- if(iter->small_dset_dims[u] > 0) {
- printf("\t\t# of dataset dimensions of size %u: %lu\n", u,
- iter->small_dset_dims[u]);
- total += iter->small_dset_dims[u];
- } /* end if */
- } /* end for */
- printf("\t\tTotal small datasets: %lu\n", total);
-
- /* Protect against no datasets in file */
- if(iter->dset_dim_nbins > 0) {
- printf("\t1-D Dataset dimension bins:\n");
- total = 0;
- if(iter->dset_dim_bins[0] > 0) {
- printf("\t\t# of datasets of size 0: %lu\n", iter->dset_dim_bins[0]);
- total = iter->dset_dim_bins[0];
- } /* end if */
- power = 1;
- for(u = 1; u < iter->dset_dim_nbins; u++) {
- if(iter->dset_dim_bins[u] > 0) {
- printf("\t\t# of datasets of size %lu - %lu: %lu\n", power, (power * 10) - 1,
- iter->dset_dim_bins[u]);
- total += iter->dset_dim_bins[u];
- } /* end if */
- power *= 10;
- } /* end for */
- printf("\t\tTotal # of datasets: %lu\n", total);
- } /* end if */
-
- printf("Dataset storage information:\n");
- HDfprintf(stdout, "\tTotal raw data size: %Hu\n", iter->dset_storage_size);
-
- printf("Dataset layout information:\n");
- for(u = 0; u < H5D_NLAYOUTS; u++)
- printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
- (u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]);
- printf("\tNumber of external files : %lu\n", iter->nexternal);
-
- printf("Dataset filters information:\n");
- printf("\tNumber of datasets with:\n");
- printf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR+1]);
- printf("\t\tGZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_DEFLATE]);
- printf("\t\tSHUFFLE filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SHUFFLE]);
- printf("\t\tFLETCHER32 filter: %lu\n", iter->dset_comptype[H5Z_FILTER_FLETCHER32]);
- printf("\t\tSZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SZIP]);
- printf("\t\tNBIT filter: %lu\n", iter->dset_comptype[H5Z_FILTER_NBIT]);
- printf("\t\tSCALEOFFSET filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SCALEOFFSET]);
- printf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL-1]);
-
- if(display_dtype_metadata) {
- printf("Dataset datatype information:\n");
- printf("\t# of unique datatypes used by datasets: %lu\n", iter->dset_ntypes);
- total = 0;
- for(u = 0; u < iter->dset_ntypes; u++) {
- H5Tencode(iter->dset_type_info[u].tid, NULL, &dtype_size);
- printf("\tDataset datatype #%u:\n", u);
- printf("\t\tCount (total/named) = (%lu/%lu)\n", iter->dset_type_info[u].count, iter->dset_type_info[u].named);
- printf("\t\tSize (desc./elmt) = (%lu/%lu)\n", (unsigned long)dtype_size,
- (unsigned long)H5Tget_size(iter->dset_type_info[u].tid));
- H5Tclose(iter->dset_type_info[u].tid);
- total += iter->dset_type_info[u].count;
- } /* end for */
- printf("\tTotal dataset datatype count: %lu\n", total);
- }
- } /* end if */
-
- return 0;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_file_statistics
- *
- * Purpose: Prints file statistics
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Saturday, August 12, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-print_file_statistics(const iter_t *iter)
-{
- if(display_all) {
- display_file = TRUE;
- display_file_metadata = TRUE;
- display_group = TRUE;
- display_group_metadata = TRUE;
- display_dset = TRUE;
- display_dtype_metadata = TRUE;
- display_attr = TRUE;
- }
-
- if(display_file) print_file_info(iter);
- if(display_file_metadata) print_file_metadata(iter);
- if(display_group) print_group_info(iter);
- if(display_dset) print_dataset_info(iter);
- if(display_attr) print_attr_info(iter);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_object_statistics
- *
- * Purpose: Prints object statistics
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Thursday, August 17, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-print_object_statistics(const char *name)
-{
- printf("Object name %s\n", name);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: print_statistics
- *
- * Purpose: Prints statistics
- *
- * Return: Success: 0
- *
- * Failure: Never fails
- *
- * Programmer: Elena Pourmal
- * Thursday, August 17, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-print_statistics(const char *name, const iter_t *iter)
-{
- if(display_object)
- print_object_statistics(name);
- else
- print_file_statistics(iter);
-}
-
-
-int
-main(int argc, const char *argv[])
-{
- iter_t iter;
- const char *fname = NULL;
- hid_t fid;
- struct handler_t *hand;
- char root[] = "/";
- int i;
- H5F_info_t finfo;
-
-
- /* Disable error reporting */
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
- /* Initialize h5tools lib */
- h5tools_init();
- hand = parse_command_line (argc, argv);
- if (!hand) {
- error_msg(progname, "unable to parse command line arguments \n");
- leave(EXIT_FAILURE);
- }
-
- fname = argv[opt_ind];
- hand[opt_ind].obj = root;
- hand[opt_ind].flag = 1;
- if (display_object) hand[opt_ind].flag = 0;
-
- printf("Filename: %s\n", fname);
-
- fid = H5Fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT);
- if (fid < 0) {
- error_msg(progname, "unable to open file \"%s\"\n", fname);
- leave(EXIT_FAILURE);
- }
-
- /* Initialize iter structure */
- iter_init(&iter);
-
- /* Get storge info for SOHM's btree/list/heap and superblock extension */
- if(H5Fget_info(fid, &finfo) < 0)
- warn_msg(progname, "Unable to retrieve SOHM info\n");
- else {
- iter.super_ext_size = finfo.super_ext_size;
- iter.SM_hdr_storage_size = finfo.sohm.hdr_size;
- iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size;
- iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size;
- }
-
- /* Walk the objects or all file */
- for(i = 0; i < argc; i++) {
- if(hand[i].obj) {
- if(hand[i].flag) {
- walk(fid, hand[i].obj, &iter);
- print_statistics(hand[i].obj, &iter);
- }
- }
- }
-
- free(hand);
-
- if(H5Fclose(fid) < 0) {
- error_msg(progname, "unable to close file \"%s\"\n", fname);
- leave(EXIT_FAILURE);
- }
-
- leave(EXIT_SUCCESS);
-}
-
diff --git a/tools/misc/h5stat_gentest.c b/tools/misc/h5stat_gentest.c
deleted file mode 100644
index f0219bd..0000000
--- a/tools/misc/h5stat_gentest.c
+++ /dev/null
@@ -1,84 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/*
- * Generate the binary hdf5 files for the h5stat tests.
- * Usage: just execute the program without any arguments will
- * generate all the binary hdf5 files in the ./testfiles directory.
- *
- * If you regenerate the test files (e.g., changing some code,
- * trying it on a new platform, ...), you need to verify the correctness
- * of the expected output and update the corresponding *.ddl files.
- */
-
-#include "hdf5.h"
-
-#define FILE "h5stat_newgrat.h5"
-#define DATASET_NAME "DATASET_NAME"
-#define GROUP_NAME "GROUP"
-#define ATTR_NAME "ATTR"
-#define NUM_GRPS 350
-#define NUM_ATTRS 100
-
-/*
- * Generate 1.8 HDF5 file
- * with NUM_GRPS groups
- * with NUM_ATTRS for the
- */
-static void gen_file(void)
-{
- int ret, i;
- hid_t fapl, gid;
- hid_t file, type_id, space_id, attr_id, dset_id;
- char name[30];
- char attrname[30];
-
-
- fapl = H5Pcreate(H5P_FILE_ACCESS);
- ret = H5Pset_latest_format(fapl,1);
-
- /* Create dataset */
- file=H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
- for (i=1; i<=NUM_GRPS; i++) {
- sprintf(name, "%s%d", GROUP_NAME,i);
- gid = H5Gcreate(file, name, (size_t)0);
- H5Gclose(gid);
- }
-
-
- /* Create a datatype to commit and use */
- type_id=H5Tcopy(H5T_NATIVE_INT);
- /* Create dataspace for dataset */
- space_id=H5Screate(H5S_SCALAR);
- /* Create dataset */
- dset_id=H5Dcreate(file, DATASET_NAME,type_id,space_id,H5P_DEFAULT);
- for (i=1; i<=NUM_ATTRS; i++) {
- sprintf(attrname, "%s%d", ATTR_NAME,i);
- attr_id=H5Acreate(dset_id,attrname, type_id,space_id,H5P_DEFAULT);
- ret=H5Aclose(attr_id);
- }
-
- ret=H5Dclose(dset_id);
- ret=H5Sclose(space_id);
- ret=H5Tclose(type_id);
- ret=H5Fclose(file);
-}
-
-int main(void)
-{
- gen_file();
-
- return 0;
-}
diff --git a/tools/misc/testfiles/h5stat_filters-F.ddl b/tools/misc/testfiles/h5stat_filters-F.ddl
deleted file mode 100644
index 544d0c7..0000000
--- a/tools/misc/testfiles/h5stat_filters-F.ddl
+++ /dev/null
@@ -1,21 +0,0 @@
-#############################
-Expected output for 'h5stat -F h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-Object header size: (total/unused)
- Groups: 48/8
- Datasets: 4936/1344
-Storage information:
- Groups:
- B-tree/List: 1200
- Heap: 288
- Attributes:
- B-tree/List: 0
- Heap: 0
- Chunked datasets:
- B-tree: 31392
- Shared Messages:
- Header: 0
- B-tree/List: 0
- Heap: 0
- Superblock extension: 0
diff --git a/tools/misc/testfiles/h5stat_filters-d.ddl b/tools/misc/testfiles/h5stat_filters-d.ddl
deleted file mode 100644
index e83c6c4..0000000
--- a/tools/misc/testfiles/h5stat_filters-d.ddl
+++ /dev/null
@@ -1,33 +0,0 @@
-#############################
-Expected output for 'h5stat -d h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-Dataset dimension information:
- Max. rank of datasets: 2
- Dataset ranks:
- # of dataset with rank 1: 1
- # of dataset with rank 2: 14
-1-D Dataset information:
- Max. dimension size of 1-D datasets: 100
- Small 1-D datasets:
- Total small datasets: 0
- 1-D Dataset dimension bins:
- # of datasets of size 100 - 999: 1
- Total # of datasets: 1
-Dataset storage information:
- Total raw data size: 8659
-Dataset layout information:
- Dataset layout counts[COMPACT]: 1
- Dataset layout counts[CONTIG]: 2
- Dataset layout counts[CHUNKED]: 12
- Number of external files : 2
-Dataset filters information:
- Number of datasets with:
- NO filter: 7
- GZIP filter: 2
- SHUFFLE filter: 2
- FLETCHER32 filter: 2
- SZIP filter: 2
- NBIT filter: 2
- SCALEOFFSET filter: 1
- USER-DEFINED filter: 1
diff --git a/tools/misc/testfiles/h5stat_filters-dT.ddl b/tools/misc/testfiles/h5stat_filters-dT.ddl
deleted file mode 100644
index 62735f0..0000000
--- a/tools/misc/testfiles/h5stat_filters-dT.ddl
+++ /dev/null
@@ -1,42 +0,0 @@
-#############################
-Expected output for 'h5stat -dT h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-Dataset dimension information:
- Max. rank of datasets: 2
- Dataset ranks:
- # of dataset with rank 1: 1
- # of dataset with rank 2: 14
-1-D Dataset information:
- Max. dimension size of 1-D datasets: 100
- Small 1-D datasets:
- Total small datasets: 0
- 1-D Dataset dimension bins:
- # of datasets of size 100 - 999: 1
- Total # of datasets: 1
-Dataset storage information:
- Total raw data size: 8659
-Dataset layout information:
- Dataset layout counts[COMPACT]: 1
- Dataset layout counts[CONTIG]: 2
- Dataset layout counts[CHUNKED]: 12
- Number of external files : 2
-Dataset filters information:
- Number of datasets with:
- NO filter: 7
- GZIP filter: 2
- SHUFFLE filter: 2
- FLETCHER32 filter: 2
- SZIP filter: 2
- NBIT filter: 2
- SCALEOFFSET filter: 1
- USER-DEFINED filter: 1
-Dataset datatype information:
- # of unique datatypes used by datasets: 2
- Dataset datatype #0:
- Count (total/named) = (14/0)
- Size (desc./elmt) = (14/4)
- Dataset datatype #1:
- Count (total/named) = (1/0)
- Size (desc./elmt) = (14/4)
- Total dataset datatype count: 15
diff --git a/tools/misc/testfiles/h5stat_filters-file.ddl b/tools/misc/testfiles/h5stat_filters-file.ddl
deleted file mode 100644
index c6aeef0..0000000
--- a/tools/misc/testfiles/h5stat_filters-file.ddl
+++ /dev/null
@@ -1,13 +0,0 @@
-#############################
-Expected output for 'h5stat -f h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-File information
- # of unique groups: 1
- # of unique datasets: 15
- # of unique named dataypes: 1
- # of unique links: 0
- # of unique other: 0
- Max. # of links to object: 1
- Max. depth of hierarchy: 0
- Max. # of objects in group: 16
diff --git a/tools/misc/testfiles/h5stat_filters-g.ddl b/tools/misc/testfiles/h5stat_filters-g.ddl
deleted file mode 100644
index d488b8f..0000000
--- a/tools/misc/testfiles/h5stat_filters-g.ddl
+++ /dev/null
@@ -1,9 +0,0 @@
-#############################
-Expected output for 'h5stat -g h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-Small groups:
- Total # of small groups: 0
-Group bins:
- # of groups of size 10 - 99: 1
- Total # of groups: 1
diff --git a/tools/misc/testfiles/h5stat_filters.ddl b/tools/misc/testfiles/h5stat_filters.ddl
deleted file mode 100644
index 4dd6aee..0000000
--- a/tools/misc/testfiles/h5stat_filters.ddl
+++ /dev/null
@@ -1,78 +0,0 @@
-#############################
-Expected output for 'h5stat h5stat_filters.h5'
-#############################
-Filename: h5stat_filters.h5
-File information
- # of unique groups: 1
- # of unique datasets: 15
- # of unique named dataypes: 1
- # of unique links: 0
- # of unique other: 0
- Max. # of links to object: 1
- Max. depth of hierarchy: 0
- Max. # of objects in group: 16
-Object header size: (total/unused)
- Groups: 48/8
- Datasets: 4936/1344
-Storage information:
- Groups:
- B-tree/List: 1200
- Heap: 288
- Attributes:
- B-tree/List: 0
- Heap: 0
- Chunked datasets:
- B-tree: 31392
- Shared Messages:
- Header: 0
- B-tree/List: 0
- Heap: 0
- Superblock extension: 0
-Small groups:
- Total # of small groups: 0
-Group bins:
- # of groups of size 10 - 99: 1
- Total # of groups: 1
-Dataset dimension information:
- Max. rank of datasets: 2
- Dataset ranks:
- # of dataset with rank 1: 1
- # of dataset with rank 2: 14
-1-D Dataset information:
- Max. dimension size of 1-D datasets: 100
- Small 1-D datasets:
- Total small datasets: 0
- 1-D Dataset dimension bins:
- # of datasets of size 100 - 999: 1
- Total # of datasets: 1
-Dataset storage information:
- Total raw data size: 8659
-Dataset layout information:
- Dataset layout counts[COMPACT]: 1
- Dataset layout counts[CONTIG]: 2
- Dataset layout counts[CHUNKED]: 12
- Number of external files : 2
-Dataset filters information:
- Number of datasets with:
- NO filter: 7
- GZIP filter: 2
- SHUFFLE filter: 2
- FLETCHER32 filter: 2
- SZIP filter: 2
- NBIT filter: 2
- SCALEOFFSET filter: 1
- USER-DEFINED filter: 1
-Dataset datatype information:
- # of unique datatypes used by datasets: 2
- Dataset datatype #0:
- Count (total/named) = (14/0)
- Size (desc./elmt) = (14/4)
- Dataset datatype #1:
- Count (total/named) = (1/0)
- Size (desc./elmt) = (14/4)
- Total dataset datatype count: 15
-Small # of attributes:
- Total # of objects with small # of attributes: 0
-Attribute bins:
- Total # of objects with attributes: 0
- Max. # of attributes to objects: 0
diff --git a/tools/misc/testfiles/h5stat_filters.h5 b/tools/misc/testfiles/h5stat_filters.h5
deleted file mode 100644
index 5b5f4bb..0000000
Binary files a/tools/misc/testfiles/h5stat_filters.h5 and /dev/null differ
diff --git a/tools/misc/testfiles/h5stat_help1.ddl b/tools/misc/testfiles/h5stat_help1.ddl
deleted file mode 100644
index 0841572..0000000
--- a/tools/misc/testfiles/h5stat_help1.ddl
+++ /dev/null
@@ -1,24 +0,0 @@
-#############################
-Expected output for 'h5stat -h'
-#############################
-
-This tool is under development. For detailed information
-please see the specification document at
-http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf
-
-Please send your comments and questions to help@hdfgroup.org
-
-Usage: h5stat [OPTIONS] file
-
- OPTIONS
- -h, --help Print a usage message and exit
- -V, --version Print version number and exit
- -f, --file Print file information
- -F, --filemetadata Print file metadata
- -g, --group Print group information
- -G, --groupmetadata Print group metadata
- -d, --dset Print dataset information
- -D, --dsetmetadata Print dataset metadata
- -T, --dtypemetadata Print datatype metadata
- -A, --attribute Print attribute information
-
diff --git a/tools/misc/testfiles/h5stat_help2.ddl b/tools/misc/testfiles/h5stat_help2.ddl
deleted file mode 100644
index 1e6295b..0000000
--- a/tools/misc/testfiles/h5stat_help2.ddl
+++ /dev/null
@@ -1,24 +0,0 @@
-#############################
-Expected output for 'h5stat --help'
-#############################
-
-This tool is under development. For detailed information
-please see the specification document at
-http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf
-
-Please send your comments and questions to help@hdfgroup.org
-
-Usage: h5stat [OPTIONS] file
-
- OPTIONS
- -h, --help Print a usage message and exit
- -V, --version Print version number and exit
- -f, --file Print file information
- -F, --filemetadata Print file metadata
- -g, --group Print group information
- -G, --groupmetadata Print group metadata
- -d, --dset Print dataset information
- -D, --dsetmetadata Print dataset metadata
- -T, --dtypemetadata Print datatype metadata
- -A, --attribute Print attribute information
-
diff --git a/tools/misc/testfiles/h5stat_newgrat.ddl b/tools/misc/testfiles/h5stat_newgrat.ddl
deleted file mode 100644
index 228d565..0000000
--- a/tools/misc/testfiles/h5stat_newgrat.ddl
+++ /dev/null
@@ -1,74 +0,0 @@
-#############################
-Expected output for 'h5stat h5stat_newgrat.h5'
-#############################
-Filename: h5stat_newgrat.h5
-File information
- # of unique groups: 351
- # of unique datasets: 1
- # of unique named dataypes: 0
- # of unique links: 0
- # of unique other: 0
- Max. # of links to object: 1
- Max. depth of hierarchy: 1
- Max. # of objects in group: 351
-Object header size: (total/unused)
- Groups: 51597/32292
- Datasets: 414/312
-Storage information:
- Groups:
- B-tree/List: 5158
- Heap: 7643
- Attributes:
- B-tree/List: 2598
- Heap: 4442
- Chunked datasets:
- B-tree: 0
- Shared Messages:
- Header: 0
- B-tree/List: 0
- Heap: 0
- Superblock extension: 0
-Small groups:
- # of groups of size 0: 350
- Total # of small groups: 350
-Group bins:
- # of groups of size 0: 350
- # of groups of size 100 - 999: 1
- Total # of groups: 351
-Dataset dimension information:
- Max. rank of datasets: 0
- Dataset ranks:
- # of dataset with rank 0: 1
-1-D Dataset information:
- Max. dimension size of 1-D datasets: 0
- Small 1-D datasets:
- Total small datasets: 0
-Dataset storage information:
- Total raw data size: 0
-Dataset layout information:
- Dataset layout counts[COMPACT]: 0
- Dataset layout counts[CONTIG]: 1
- Dataset layout counts[CHUNKED]: 0
- Number of external files : 0
-Dataset filters information:
- Number of datasets with:
- NO filter: 1
- GZIP filter: 0
- SHUFFLE filter: 0
- FLETCHER32 filter: 0
- SZIP filter: 0
- NBIT filter: 0
- SCALEOFFSET filter: 0
- USER-DEFINED filter: 0
-Dataset datatype information:
- # of unique datatypes used by datasets: 1
- Dataset datatype #0:
- Count (total/named) = (1/0)
- Size (desc./elmt) = (14/4)
- Total dataset datatype count: 1
-Small # of attributes:
- Total # of objects with small # of attributes: 0
-Attribute bins:
- # of objects with 100 - 999 attributes: 1
- Total # of objects with attributes: 1
- Max. # of attributes to objects: 100
diff --git a/tools/misc/testfiles/h5stat_newgrat.h5 b/tools/misc/testfiles/h5stat_newgrat.h5
deleted file mode 100644
index cab98bb..0000000
Binary files a/tools/misc/testfiles/h5stat_newgrat.h5 and /dev/null differ
diff --git a/tools/misc/testfiles/h5stat_tsohm.ddl b/tools/misc/testfiles/h5stat_tsohm.ddl
deleted file mode 100644
index 572965e..0000000
--- a/tools/misc/testfiles/h5stat_tsohm.ddl
+++ /dev/null
@@ -1,72 +0,0 @@
-#############################
-Expected output for 'h5stat h5stat_tsohm.h5'
-#############################
-Filename: h5stat_tsohm.h5
-File information
- # of unique groups: 1
- # of unique datasets: 2
- # of unique named dataypes: 0
- # of unique links: 0
- # of unique other: 0
- Max. # of links to object: 1
- Max. depth of hierarchy: 0
- Max. # of objects in group: 2
-Object header size: (total/unused)
- Groups: 51/2
- Datasets: 568/358
-Storage information:
- Groups:
- B-tree/List: 872
- Heap: 120
- Attributes:
- B-tree/List: 0
- Heap: 0
- Chunked datasets:
- B-tree: 0
- Shared Messages:
- Header: 38
- B-tree/List: 550
- Heap: 1316
- Superblock extension: 40
-Small groups:
- # of groups of size 2: 1
- Total # of small groups: 1
-Group bins:
- # of groups of size 1 - 9: 1
- Total # of groups: 1
-Dataset dimension information:
- Max. rank of datasets: 2
- Dataset ranks:
- # of dataset with rank 2: 2
-1-D Dataset information:
- Max. dimension size of 1-D datasets: 0
- Small 1-D datasets:
- Total small datasets: 0
-Dataset storage information:
- Total raw data size: 0
-Dataset layout information:
- Dataset layout counts[COMPACT]: 0
- Dataset layout counts[CONTIG]: 0
- Dataset layout counts[CHUNKED]: 2
- Number of external files : 0
-Dataset filters information:
- Number of datasets with:
- NO filter: 2
- GZIP filter: 0
- SHUFFLE filter: 0
- FLETCHER32 filter: 0
- SZIP filter: 0
- NBIT filter: 0
- SCALEOFFSET filter: 0
- USER-DEFINED filter: 0
-Dataset datatype information:
- # of unique datatypes used by datasets: 1
- Dataset datatype #0:
- Count (total/named) = (2/0)
- Size (desc./elmt) = (14/4)
- Total dataset datatype count: 2
-Small # of attributes:
- Total # of objects with small # of attributes: 0
-Attribute bins:
- Total # of objects with attributes: 0
- Max. # of attributes to objects: 0
diff --git a/tools/misc/testfiles/h5stat_tsohm.h5 b/tools/misc/testfiles/h5stat_tsohm.h5
deleted file mode 100644
index 45ee36c..0000000
Binary files a/tools/misc/testfiles/h5stat_tsohm.h5 and /dev/null differ
diff --git a/tools/misc/testh5stat.sh.in b/tools/misc/testh5stat.sh.in
deleted file mode 100644
index 66d05be..0000000
--- a/tools/misc/testh5stat.sh.in
+++ /dev/null
@@ -1,135 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# Tests for the h5dump tool
-
-# Determine which filters are available
-USE_FILTER_SZIP="@USE_FILTER_SZIP@"
-USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
-USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
-USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
-USE_FILTER_NBIT="@USE_FILTER_NBIT@"
-USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
-
-STAT=h5stat # The tool name
-STAT_BIN=`pwd`/$STAT # The path of the tool binary
-
-CMP='cmp -s'
-DIFF='diff -c'
-
-nerrors=0
-verbose=yes
-
-# The build (current) directory might be different than the source directory.
-if test -z "$srcdir"; then
- srcdir=.
-fi
-
-test -d ./testfiles || mkdir ./testfiles
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Testing".
-#
-TESTING() {
- SPACES=" "
- echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Run a test and print PASS or *FAIL*. If a test fails then increment
-# the `nerrors' global variable and (if $verbose is set) display the
-# difference between the actual output and the expected output. The
-# expected output is given as the first argument to this function and
-# the actual output file is calculated by replacing the `.ddl' with
-# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
-# non-zero value.
-#
-TOOLTEST() {
- expect="$srcdir/testfiles/$1"
- actual="./testfiles/`basename $1 .ddl`.out"
- actual_err="./testfiles/`basename $1 .ddl`.err"
- shift
-
- # Run test.
- TESTING $STAT $@
- (
- echo "#############################"
- echo "Expected output for '$STAT $@'"
- echo "#############################"
- cd $srcdir/testfiles
- $RUNSERIAL $STAT_BIN $@
- ) >$actual 2>$actual_err
- cat $actual_err >> $actual
-
-
- if [ ! -f $expect ]; then
- # Create the expect file if it doesn't yet exist.
- echo " CREATED"
- cp $actual $expect
- elif $CMP $expect $actual; then
- echo " PASSED"
- else
- echo "*FAILED*"
- echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
- fi
-
- # Clean up output file
- if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err
- fi
-}
-
-
-# Print a "SKIP" message
-SKIP() {
- TESTING $STAT $@
- echo " -SKIP-"
-}
-
-
-
-##############################################################################
-##############################################################################
-### T H E T E S T S ###
-##############################################################################
-##############################################################################
-
-# Test for help flag
-TOOLTEST h5stat_help1.ddl -h
-TOOLTEST h5stat_help2.ddl --help
-
-# Test file with groups, compressed datasets, user-applied fileters, etc.
-# h5stat_filters.h5 is a copy of ../../testfiles/tfilters.h5 as of release 1.8.0-alpha4
-TOOLTEST h5stat_filters.ddl h5stat_filters.h5
-TOOLTEST h5stat_filters-file.ddl -f h5stat_filters.h5
-TOOLTEST h5stat_filters-F.ddl -F h5stat_filters.h5
-TOOLTEST h5stat_filters-d.ddl -d h5stat_filters.h5
-TOOLTEST h5stat_filters-g.ddl -g h5stat_filters.h5
-TOOLTEST h5stat_filters-dT.ddl -dT h5stat_filters.h5
-# h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c
-# as of release 1.8.0-alpha4
-TOOLTEST h5stat_tsohm.ddl h5stat_tsohm.h5
-# h5stat_newgrat.h5 is generated by h5stat_gentest.c
-TOOLTEST h5stat_newgrat.ddl h5stat_newgrat.h5
-echo
-
-
-if test $nerrors -eq 0 ; then
- echo "All $STAT tests passed."
-fi
-
-exit $nerrors
-
--
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