From 4322bfe90ab7de7245ff770155867fa5da78147c Mon Sep 17 00:00:00 2001
From: Albert Cheng <acheng@hdfgroup.org>
Date: Wed, 19 Aug 1998 16:46:55 -0500
Subject: [svn-r605] Added in h5dump tools created by Ruey-Hsia. Renamed what
was called h5dump.c to h5tools.c. Changed Makefile.in to reflect all the
changes. (Make dependence is to be processed later.)
Tested in Solaris 2.5
---
tools/Makefile.in | 9 +-
tools/h5dump.c | 660 +++++++++++++++++++++++++++++++++++++++++++++++++++++
tools/h5dump.h | 160 +++++++++++++
tools/h5dumputil.c | 523 ++++++++++++++++++++++++++++++++++++++++++
4 files changed, 1349 insertions(+), 3 deletions(-)
create mode 100644 tools/h5dump.c
create mode 100644 tools/h5dump.h
create mode 100644 tools/h5dumputil.c
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 2ab717a..e2c14c9 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -10,16 +10,16 @@
CPPFLAGS=-I../src -I. @CPPFLAGS@
# These are our main targets:
-PROGS=h5debug h5import h5ls h5repart
+PROGS=h5debug h5import h5ls h5repart h5dump
LIB=libh5tools.a
LIBS=../src/libhdf5.a libh5tools.a @LIBS@
# Source and object files for the library.
-LIB_SRC=h5dump.c
+LIB_SRC=h5tools.c
LIB_OBJ=$(LIB_SRC:.c=.o)
# Source and object files for programs...
-PROG_SRC=h5debug.c h5import.c h5ls.c h5repart.c
+PROG_SRC=h5debug.c h5import.c h5ls.c h5repart.c h5dump.c h5dumputil.c
PROG_OBJ=$(PROG_SRC:.c=.o)
PRIVATE_HDR=h5tools.h
@@ -36,4 +36,7 @@ h5ls: h5ls.o $(LIB) ../src/libhdf5.a
h5repart: h5repart.o $(LIB) ../src/libhdf5.a
$(CC) $(CFLAGS) -o $@ h5repart.o $(LIBS)
+h5dump: h5dump.o h5dumputil.o $(LIB) ../src/libhdf5.a
+ $(CC) $(CFLAGS) -o $@ h5dump.o h5dumputil.o $(LIBS)
+
@CONCLUDE@
diff --git a/tools/h5dump.c b/tools/h5dump.c
new file mode 100644
index 0000000..a8a0a81
--- /dev/null
+++ b/tools/h5dump.c
@@ -0,0 +1,660 @@
+#include <h5dump.h>
+
+static int indent = 0;
+
+/*-------------------------------------------------------------------------
+ * Function: usage
+ *
+ * Purpose: Print the usage message about dumper
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+usage()
+{
+
+printf("Usage: dumper <filename>\n");
+
+/*
+ printf(" Usage: h5dumper [OPTIONS] <file>\n");
+ printf(" OPTIONS\n");
+ printf(" -H Print a usage message \n");
+ printf(" -nobb No boot block\n");
+ printf(" -nodata No data\n");
+ printf(" -g <name> Dump everything in the group with name <name>\n");
+ printf(" -d <name> Dump everything in the dataset with name <name>\n");
+ printf(" -l <name> Dump the target of the link with name <link>\n");
+*/
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: indentation
+ *
+ * Purpose: Print spaces for indentation
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void indentation(int x) {
+
+ while (x>0) {
+ printf(" ");
+ x--;
+ }
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: datatype_name
+ *
+ * Purpose: Returns the name of data type.
+ *
+ * Return: Returns a pointer to a string.
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static char*
+datatype_name(hid_t type) {
+
+ switch (H5Tget_class(type)) {
+
+ case H5T_INTEGER:
+
+ if (H5Tequal(type, H5T_NATIVE_CHAR))
+ return "H5T_NATIVE_CHAR";
+ else if (H5Tequal(type, H5T_NATIVE_UCHAR))
+ return "H5T_NATIVE_UCHAR";
+ else if (H5Tequal(type, H5T_NATIVE_SHORT))
+ return "H5T_NATIVE_SHORT";
+ else if (H5Tequal(type, H5T_NATIVE_USHORT))
+ return "H5T_NATIVE_USHORT";
+ else if (H5Tequal(type, H5T_NATIVE_INT))
+ return "H5T_NATIVE_INT";
+ else if (H5Tequal(type, H5T_NATIVE_UINT))
+ return "H5T_NATIVE_UINT";
+ else if (H5Tequal(type, H5T_NATIVE_LONG))
+ return "H5T_NATIVE_LONG";
+ else if (H5Tequal(type, H5T_NATIVE_ULONG))
+ return "H5T_NATIVE_ULONG";
+ else if (H5Tequal(type, H5T_NATIVE_LLONG))
+ return "H5T_NATIVE_LLONG";
+ else if (H5Tequal(type, H5T_NATIVE_ULLONG))
+ return "H5T_NATIVE_ULLONG";
+ else if (H5Tequal(type, H5T_STD_I8BE))
+ return "H5T_STD_I8BE";
+ else if (H5Tequal(type, H5T_STD_I8LE))
+ return "H5T_STD_I8LE";
+ else if (H5Tequal(type, H5T_STD_I16BE))
+ return "H5T_STD_I16BE";
+ else if (H5Tequal(type, H5T_STD_I16LE))
+ return "H5T_STD_I16LE";
+ else if (H5Tequal(type, H5T_STD_I32BE))
+ return "H5T_STD_I32BE";
+ else if (H5Tequal(type, H5T_STD_I32LE))
+ return "H5T_STD_I32LE";
+ else if (H5Tequal(type, H5T_STD_I64BE))
+ return "H5T_STD_I64BE";
+ else if (H5Tequal(type, H5T_STD_I64LE))
+ return "H5T_STD_I64LE";
+ else if (H5Tequal(type, H5T_STD_U8BE))
+ return "H5T_STD_U8BE";
+ else if (H5Tequal(type, H5T_STD_U8LE))
+ return "H5T_STD_U8LE";
+ else if (H5Tequal(type, H5T_STD_U16BE))
+ return "H5T_STD_U16BE";
+ else if (H5Tequal(type, H5T_STD_U16LE))
+ return "H5T_STD_U16LE";
+ else if (H5Tequal(type, H5T_STD_U32BE))
+ return "H5T_STD_U32BE";
+ else if (H5Tequal(type, H5T_STD_U32LE))
+ return "H5T_STD_U32LE";
+ else if (H5Tequal(type, H5T_STD_U64BE))
+ return "H5T_STD_U64BE";
+ else if (H5Tequal(type, H5T_STD_U64LE))
+ return "H5T_STD_U64LE";
+ else return "unknown integer";
+
+ case H5T_FLOAT:
+
+ if (H5Tequal(type, H5T_NATIVE_FLOAT))
+ return "H5T_NATIVE_FLOAT";
+ else if (H5Tequal(type, H5T_NATIVE_DOUBLE))
+ return "H5T_NATIVE_DOUBLE";
+ else if (H5Tequal(type, H5T_NATIVE_LDOUBLE))
+ return "H5T_NATIVE_LDOUBLE";
+ else if (H5Tequal(type, H5T_IEEE_F32BE))
+ return "H5T_IEEE_F32BE";
+ else if (H5Tequal(type, H5T_IEEE_F32LE))
+ return "H5T_IEEE_F32LE";
+ else if (H5Tequal(type, H5T_IEEE_F64BE))
+ return "H5T_IEEE_F64BE";
+ else if (H5Tequal(type, H5T_IEEE_F64LE))
+ return "H5T_IEEE_F64LE";
+ else return "unknown float";
+
+ case H5T_TIME: return "time: not yet implemented";
+
+ case H5T_STRING:
+
+ if (H5Tequal(type,H5T_C_S1))
+ return "H5T_C_S1";
+ else if (H5Tequal(type,H5T_FORTRAN_S1))
+ return "H5T_FORTRAN_S1";
+ else return "unknown string";
+
+ case H5T_BITFIELD:
+
+ if (H5Tequal(type, H5T_STD_B8BE))
+ return "H5T_STD_B8BE";
+ else if (H5Tequal(type, H5T_STD_B8LE))
+ return "H5T_STD_B8LE";
+ else if (H5Tequal(type, H5T_STD_B16BE))
+ return "H5T_STD_B16BE";
+ else if (H5Tequal(type, H5T_STD_B16LE))
+ return "H5T_STD_B16LE";
+ else if (H5Tequal(type, H5T_STD_B32BE))
+ return "H5T_STD_B32BE";
+ else if (H5Tequal(type, H5T_STD_B32LE))
+ return "H5T_STD_B32LE";
+ else if (H5Tequal(type, H5T_STD_B64BE))
+ return "H5T_STD_B64BE";
+ else if (H5Tequal(type, H5T_STD_B64LE))
+ return "H5T_STD_B64LE";
+ else return "unknown bitfield";
+
+ case H5T_OPAQUE: return "opaque: not yet implemented";
+
+ case H5T_COMPOUND:
+
+ return "compound: not yet implemented";
+
+ default:
+ return "unknown data type";
+ }
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_bb
+ *
+ * Purpose: Dump the boot block
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_bb() {
+
+ printf ("%s %s %s\n", BOOT_BLOCK, BEGIN, END);
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_datatype
+ *
+ * Purpose: Dump the data type. Data type can be HDF5 predefined
+ * atomic data type, named data type or compound data type.
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_datatype (hid_t type) {
+char *pt;
+char *fname ;
+hid_t nmembers, mtype;
+int i, ndims, perm[512];
+size_t dims[512];
+
+ indent += col;
+ indentation (indent);
+ pt = datatype_name(type);
+ printf ("%s %s \"%s\" %s\n", DATATYPE, BEGIN, pt, END);
+ indent -= col;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_dataspace
+ *
+ * Purpose: Dump the data space. Data space can be named data space,
+ * array, or others.
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_dataspace (hid_t dataset_id, hid_t space) {
+hsize_t size[64];
+hsize_t maxsize[64]; /* check max dims size */
+int ndims = H5Sextent_dims(space, size, maxsize);
+int i;
+
+ indent += col;
+
+ indentation (indent);
+
+ printf("%s ", DATASPACE);
+
+ if (H5Sis_simple(space)) {
+
+ HDfprintf (stdout, "%s %s ( %Hu",BEGIN, ARRAY, size[0]);
+ for (i = 1; i < ndims; i++)
+ HDfprintf (stdout, ", %Hu", size[i]);
+ printf(" ) ");
+
+ if (maxsize[0]==H5S_UNLIMITED)
+ HDfprintf (stdout, "( %s", "H5S_UNLIMITED");
+ else
+ HDfprintf (stdout, "( %Hu", maxsize[0]);
+
+ for (i = 1; i < ndims; i++)
+ if (maxsize[i]==H5S_UNLIMITED)
+ HDfprintf (stdout, ", %s", "H5S_UNLIMITED");
+ else
+ HDfprintf (stdout, ", %Hu", maxsize[i]);
+
+ printf(" ) %s\n", END);
+
+ } else
+
+ printf("%s not yet implemented %s\n", BEGIN, END);
+
+ indent -= col;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_attr
+ *
+ * Purpose: dump the attribute
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static herr_t
+dump_attr (hid_t attr, const char *attr_name, void __unused__ *op_data)
+{
+hid_t attr_id, type, space;
+
+ indentation(indent);
+ begin_obj (ATTRIBUTE, attr_name);
+
+ if ((attr_id = H5Aopen_name (attr, attr_name))>= 0) {
+
+ type = H5Aget_type(attr_id);
+ space = H5Aget_space(attr_id);
+ dump_datatype(type);
+ dump_dataspace(attr_id, space);
+ dump_data(attr_id, ATTRIBUTE_DATA);
+ H5Tclose(type);
+ H5Sclose(space);
+ H5Aclose (attr_id);
+
+ } else {
+ indent += col;
+ indentation (indent);
+ printf("Unable to open attribute.\n", attr_name);
+ indent -= col;
+ return FAIL;
+ }
+
+ indentation (indent);
+ end_obj();
+
+ return SUCCEED;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump all
+ *
+ * Purpose: Dump everything in the specified object
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static herr_t
+dump_all (hid_t group, const char *name, void __unused__ *op_data)
+{
+hid_t obj;
+hid_t (*func)(void*);
+void *edata;
+char buf[512]; /* Is 512 large enough? */
+
+ /* Disable error reporting */
+ H5Eget_auto (&func, &edata);
+ H5Eset_auto (NULL, NULL);
+
+
+ if (H5Gget_linkval (group, name, sizeof(buf), buf)>=0) {
+
+ indentation (indent);
+ begin_obj(SOFTLINK, name);
+ indent += col;
+ indentation (indent);
+ printf ("linktarget \"%s\"\n", buf);
+ indent -= col;
+ indentation (indent);
+ end_obj();
+
+ } else if ((obj=H5Dopen (group, name))>=0) {
+
+ dump_dataset (obj, name);
+ H5Dclose (obj);
+
+ } else if ((obj=H5Gopen (group, name))>=0) {
+
+ dump_group (obj, name);
+ H5Gclose (obj);
+
+ } else if ((obj=H5Topen(group, name))>=0) {
+
+ dump_named_datatype (obj, name);
+ H5Tclose(obj);
+
+ } else {
+
+ printf ("Unknown Object %s\n", name);
+ H5Eset_auto (func, edata);
+ return FAIL;
+
+ }
+
+ /* Restore error reporting */
+ H5Eset_auto (func, edata);
+
+ return SUCCEED;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_named_datatype
+ *
+ * Purpose: Dump named data type
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_named_datatype (hid_t type_id, const char *name) {
+char *fname ;
+hid_t nmembers, mtype;
+int i, ndims, perm[512]; /* dimensionality */
+size_t dims[512];
+
+ indentation (indent);
+ begin_obj(DATATYPE, name);
+
+ indent += col;
+ indentation(indent);
+ printf("named data type: not yet implemented.\n");
+ indent -= col;
+
+ indentation (indent);
+ end_obj();
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_group
+ *
+ * Purpose: Dump everything within the specified group
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_group (hid_t gid, const char *name) {
+
+ indentation (indent);
+ begin_obj(GROUP, name);
+ indent += col;
+ H5Aiterate (gid, NULL, dump_attr, NULL);
+ H5Giterate (gid, ".", NULL, dump_all, NULL);
+ indent -= col;
+ indentation (indent);
+ end_obj();
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_dataset
+ *
+ * Purpose: Dump the specified data set
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_dataset (hid_t did, const char *name) {
+hid_t type, space;
+
+ indentation (indent);
+ begin_obj(DATASET, name);
+ indent += col;
+ H5Aiterate (did, NULL, dump_attr, NULL);
+ indent -= col;
+ type = H5Dget_type (did);
+ space = H5Dget_space (did);
+ dump_datatype(type);
+ dump_dataspace(did, space);
+
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ dump_data(did, DATASET_DATA);
+ break;
+ case H5T_FLOAT:
+ dump_data(did, DATASET_DATA);
+ break;
+ case H5T_TIME:
+ indent += col;
+ indentation (indent);
+ indent -= col;
+ printf("DATA{ not yet implemented.}\n");
+ break;
+ case H5T_STRING:
+ indent += col;
+ indentation (indent);
+ indent -= col;
+ printf("DATA{ not yet implemented.}\n");
+ break;
+ case H5T_BITFIELD:
+ indent += col;
+ indentation (indent);
+ indent -= col;
+ printf("DATA{ not yet implemented.}\n");
+ break;
+ case H5T_OPAQUE:
+ indent += col;
+ indentation (indent);
+ indent -= col;
+ printf("DATA{ not yet implemented.}\n");
+ break;
+ case H5T_COMPOUND:
+ indent += col;
+ indentation (indent);
+ indent -= col;
+ printf("DATA{ not yet implemented.}\n");
+ break;
+ default: break;
+ }
+
+ H5Tclose(type);
+ H5Sclose(space);
+ indentation (indent);
+ end_obj();
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_data
+ *
+ * Purpose: Dump attribute or dataset data
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+static void
+dump_data (hid_t obj_id, int obj_data) {
+
+ hid_t f_type ;
+ size_t size ;
+ h5dump_t info;
+
+ indent += col;
+ indentation (indent);
+ printf("%s %s", DATA, BEGIN);
+
+ if (obj_data == DATASET_DATA)
+ f_type = H5Dget_type(obj_id);
+ else
+ f_type = H5Aget_type(obj_id);
+
+ size = H5Tget_size(f_type);
+
+ /* Set to all default values and then override */
+ memset(&info, 0, sizeof info);
+ info.idx_fmt = " (%s) ";
+ info.line_ncols = 80;
+
+ /*
+ * If the dataset is a 1-byte integer type then format it as an ASCI
+ * character string instead of integers.
+ */
+ if (1==size && H5T_INTEGER==H5Tget_class(f_type)) {
+ info.elmt_suf1 = "";
+ info.elmt_suf2 = "";
+ info.idx_fmt = " (%s) \"";
+ info.line_suf = "\"";
+ printf("\"");
+ }
+
+
+ /*
+ * Print all the values.
+ */
+
+ if (h5dump1(stdout, &info, obj_id, -1, obj_data)<0) {
+ printf("Unable to print data.");
+ }
+
+ if (1==size && H5T_INTEGER==H5Tget_class(f_type))
+ printf("\"");
+
+ printf("%s\n", END);
+ indent -= col;
+
+ H5Tclose(f_type);
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: HDF5 dumper
+ *
+ * Return: Success: 0
+ * Failure: 1
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+int
+main(int argc, char *argv[]) {
+hid_t fid, gid;
+hid_t plist=H5P_DEFAULT;
+const char *fname = NULL;
+
+ if (argc > 2 || argc <= 1) {
+ usage();
+ exit(1);
+ }
+
+ /* arguments */
+ fname = argv[1];
+
+ /* open file */
+ if ((fid = H5Fopen (fname, H5F_ACC_RDONLY, plist))<0) exit(1);
+
+ begin_obj("HDF5", fname);
+
+ gid = H5Gopen (fid, "/");
+
+ dump_group(gid, "/");
+
+ end_obj();
+
+ if (H5Gclose (gid) < 0) exit(1);
+
+ if (H5Fclose (fid) < 0) exit(1);
+
+
+ return 0;
+
+}
diff --git a/tools/h5dump.h b/tools/h5dump.h
new file mode 100644
index 0000000..d537390
--- /dev/null
+++ b/tools/h5dump.h
@@ -0,0 +1,160 @@
+#ifndef _DUMPER_H
+#define _DUMPER_H
+
+#include <hdf5.h>
+#include <H5private.h>
+#include <h5tools.h>
+
+#define BOOT_BLOCK "BOOT_BLOCK"
+#define GROUP "GROUP"
+#define DATASET "DATASET"
+#define ATTRIBUTE "ATTRIBUTE"
+#define DATATYPE "DATATYPE"
+#define DATASPACE "DATASPACE"
+#define DATA "DATA"
+#define ARRAY "ARRAY"
+#define OTHER "OTHER"
+#define STORAGELAYOUT "STORAGELAYOUT"
+#define COMPRESSION "COMPRESSION"
+#define EXTERNAL "EXTERNAL"
+#define HARDLINK "HARDLINK"
+#define SOFTLINK "SOFTLINK"
+
+#define BEGIN "{"
+#define END "}"
+
+#define ATTRIBUTE_DATA 0
+#define DATASET_DATA 1
+
+
+#define begin_obj(x,y) printf("%s \"%s\" %s\n", x, y, BEGIN)
+#define end_obj() printf("%s\n", END);
+
+#define col 3;
+
+static void dump_group (hid_t , const char* );
+static void dump_dataset (hid_t, const char* );
+static void dump_data (hid_t, int);
+static void dump_named_datatype (hid_t , const char *);
+
+#endif
+
+
+/*
+ * Copyright � 1998 NCSA
+ * All rights reserved.
+ *
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Thursday, July 23, 1998
+ *
+ * Purpose: Support functions for the various tools.
+ */
+#ifndef _H5TOOLS_H
+#define _H5TOOLS_H
+
+#include <stdio.h>
+
+/*
+ * Information about how to format output.
+ */
+typedef struct h5dump_t {
+ /*
+ * Fields associated with compound array members.
+ *
+ * pre: A string to print at the beginning of each array. The
+ * default value is the left square bracket `['.
+ *
+ * sep: A string to print between array values. The default
+ * value is a comma.
+ *
+ * suf: A strint to print at the end of each array. The default
+ * value is a right square bracket `]'.
+ */
+ const char *arr_pre;
+ const char *arr_sep;
+ const char *arr_suf;
+
+ /*
+ * Fields associated with compound data types.
+ *
+ * name: How the name of the struct member is printed in the
+ * values. By default the name is not printed, but a
+ * reasonable setting might be "%s=" which prints the name
+ * followed by an equal sign and then the value.
+ *
+ * sep: A string that separates one member from another. The
+ * default is a comma.
+ *
+ * pre: A string to print at the beginning of a compound type.
+ * The default is a left curly brace.
+ *
+ * suf: A string to print at the end of each compound type. The
+ * default is a right curly brace.
+ */
+ const char *cmpd_name;
+ const char *cmpd_sep;
+ const char *cmpd_pre;
+ const char *cmpd_suf;
+
+ /*
+ * Fields associated with the individual elements.
+ *
+ * fmt: A printf(3c) format to use to print the value string
+ * after it has been rendered. The default is "%s".
+ *
+ * suf1: This string is appended to elements which are followed by
+ * another element whether the following element is on the
+ * same line or the next line. The default is a comma.
+ *
+ * suf2: This string is appended (after `suf1') to elements which
+ * are followed on the same line by another element. The
+ * default is a single space.
+ */
+ const char *elmt_fmt;
+ const char *elmt_suf1;
+ const char *elmt_suf2;
+
+ /*
+ * Fields associated with the index values printed at the left edge of
+ * each line of output.
+ *
+ * n_fmt: Each index value is printed according to this printf(3c)
+ * format string which should include a format for a long
+ * integer. The default is "%lu".
+ *
+ * sep: Each integer in the index list will be separated from the
+ * others by this string, which defaults to a comma.
+ *
+ * fmt: After the index values are formated individually and
+ * separated from one another by some string, the entire
+ * resulting string will be formated according to this
+ * printf(3c) format which should include a format for a
+ * character string. The default is "%s".
+ */
+ const char *idx_n_fmt; /*index number format */
+ const char *idx_sep; /*separator between numbers */
+ const char *idx_fmt; /*entire index format */
+
+ /*
+ * Fields associated with entire lines.
+ *
+ * ncols: Number of columns per line defaults to 80.
+ *
+ * suf: This character string will be appended to each line of
+ * output. It should not contain line feeds. The default
+ * is the empty string.
+ *
+ * sep: A character string to be printed after every line feed
+ * defaulting to the empty string. It should end with a
+ * line feed.
+ */
+ int line_ncols; /*columns of output */
+ const char *line_suf; /*string to append to each line */
+ const char *line_sep; /*separates lines */
+
+} h5dump_t;
+
+
+int h5dump1(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type, int);
+
+#endif
diff --git a/tools/h5dumputil.c b/tools/h5dumputil.c
new file mode 100644
index 0000000..d0b3847
--- /dev/null
+++ b/tools/h5dumputil.c
@@ -0,0 +1,523 @@
+/*
+ * Note: this program is a modification of h5dump.c by Robb Matzke.
+ */
+#include <assert.h>
+#include <ctype.h>
+#include <h5dump.h>
+#include <hdf5.h>
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+/*
+ * The output functions need a temporary buffer to hold a piece of the
+ * dataset while it's being printed. This constant sets the limit on the
+ * size of that temporary buffer in bytes. For efficiency's sake, choose the
+ * largest value suitable for your machine (for testing use a small value).
+ */
+#define H5DUMP_BUFSIZE 1024
+
+#define OPT(X,S) ((X)?(X):(S))
+#define MIN(X,Y) ((X)<(Y)?(X):(Y))
+#define NELMTS(X) (sizeof(X)/sizeof(*X))
+#define ALIGN(A,Z) ((((A)+(Z)-1)/(Z))*(Z))
+
+#define DATASET_DATA 1
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump_prefix
+ *
+ * Purpose: Prints the prefix to show up at the begining of the line.
+ *
+ * Return: void
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+h5dump_prefix(char *s/*out*/, const h5dump_t *info, hsize_t elmtno, int ndims,
+ hsize_t min_idx[], hsize_t max_idx[])
+{
+ hsize_t p_prod[8], p_idx[8];
+ hsize_t n, i;
+ char temp[1024];
+
+ /*
+ * Calculate the number of elements represented by a unit change in a
+ * certain index position.
+ */
+ for (i=ndims-1, p_prod[ndims-1]=1; i>0; --i) {
+ p_prod[i-1] = (max_idx[i]-min_idx[i]) * p_prod[i];
+ }
+
+ /*
+ * Calculate the index values from the element number.
+ */
+ for (i=0, n=elmtno; i<(hsize_t)ndims; i++) {
+ p_idx[i] = n / p_prod[i] + min_idx[i];
+ n %= p_prod[i];
+ }
+
+ /*
+ * Print the index values.
+ */
+ *temp = '\0';
+ for (i=0; i<(hsize_t)ndims; i++) {
+ if (i) strcat(temp, OPT(info->idx_sep, ","));
+ sprintf(temp+strlen(temp), OPT(info->idx_n_fmt, "%lu"),
+ (unsigned long)p_idx[i]);
+ }
+
+ /*
+ * Add prefix and suffix to the index.
+ */
+ sprintf(s, OPT(info->idx_fmt, "%s: "), temp);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump_sprint
+ *
+ * Purpose: Prints the value pointed to by VP into the string S assuming
+ * the data type of VP is TYPE.
+ *
+ * Return: void
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+h5dump_sprint(char *s/*out*/, const h5dump_t *info, hid_t type, void *vp)
+{
+ size_t i, n, offset;
+ char temp[1024], *name;
+ hid_t memb;
+ int nmembs, j;
+
+ if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
+ sprintf(temp, "%g", *((double*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
+ sprintf(temp, "%g", *((float*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_CHAR) ||
+ H5Tequal(type, H5T_NATIVE_UCHAR)) {
+ switch (*((char*)vp)) {
+ case '\\':
+ strcpy(temp, "\\\\");
+ break;
+ case '\b':
+ strcpy(temp, "\\b");
+ break;
+ case '\f':
+ strcpy(temp, "\\f");
+ break;
+ case '\n':
+ strcpy(temp, "\\n");
+ break;
+ case '\r':
+ strcpy(temp, "\\r");
+ break;
+ case '\t':
+ strcpy(temp, "\\t");
+ break;
+ default:
+ if (isprint(*((char*)vp))) sprintf(temp, "%c", *((char*)vp));
+ else sprintf(temp, "\\%03o", *((unsigned char*)vp));
+ break;
+ }
+ } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
+ sprintf(temp, "%d", *((short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
+ sprintf(temp, "%u", *((unsigned short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_INT)) {
+ sprintf(temp, "%d", *((int*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
+ sprintf(temp, "%u", *((unsigned*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
+ sprintf(temp, "%ld", *((long*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
+ sprintf(temp, "%lu", *((unsigned long*)vp));
+ } else if (H5T_COMPOUND==H5Tget_class(type)) {
+ nmembs = H5Tget_nmembers(type);
+ strcpy(temp, OPT(info->cmpd_pre, "{"));
+ for (j=0; j<nmembs; j++) {
+ if (j) strcat(temp, OPT(info->cmpd_sep, ","));
+
+ /* The name */
+ name = H5Tget_member_name(type, j);
+ sprintf(temp+strlen(temp), OPT(info->cmpd_name, ""), name);
+ free(name);
+
+ /* The value */
+ offset = H5Tget_member_offset(type, j);
+ memb = H5Tget_member_type(type, j);
+ h5dump_sprint(temp+strlen(temp), info, memb, (char*)vp+offset);
+ H5Tclose(memb);
+ }
+ strcat(temp, OPT(info->cmpd_suf, "}"));
+ } else {
+ strcpy(temp, "0x");
+ n = H5Tget_size(type);
+ for (i=0; i<n; i++) {
+ sprintf(temp+strlen(temp), "%02x", ((unsigned char*)vp)[i]);
+ }
+ }
+
+ sprintf(s, OPT(info->elmt_fmt, "%s"), temp);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump_simple
+ *
+ * Purpose: Print some values from a dataset with a simple data space.
+ * This is a special case of h5dump().
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+h5dump_simple(FILE *stream, const h5dump_t *info, hid_t dset, hid_t p_type, int obj_data)
+{
+ hid_t f_space; /*file data space */
+ int ndims; /*dimensionality */
+ hsize_t elmtno, i; /*counters */
+ int carry; /*counter carry value */
+ hssize_t zero[8]; /*vector of zeros */
+ int need_prefix=1; /*indices need printing */
+
+ /* Print info */
+ hsize_t p_min_idx[8]; /*min selected index */
+ hsize_t p_max_idx[8]; /*max selected index */
+ size_t p_type_nbytes; /*size of memory type */
+ hsize_t p_nelmts; /*total selected elmts */
+ char p_buf[256]; /*output string */
+ size_t p_column=0; /*output column */
+ size_t p_ncolumns=80; /*default num columns */
+ char p_prefix[1024]; /*line prefix string */
+
+ /* Stripmine info */
+ hsize_t sm_size[8]; /*stripmine size */
+ hsize_t sm_nbytes; /*bytes per stripmine */
+ hsize_t sm_nelmts; /*elements per stripmine*/
+ unsigned char *sm_buf; /*buffer for raw data */
+ hid_t sm_space; /*stripmine data space */
+
+ /* Hyperslab info */
+ hssize_t hs_offset[8]; /*starting offset */
+ hsize_t hs_size[8]; /*size this pass */
+ hsize_t hs_nelmts; /*elements in request */
+
+ /*
+ * Check that everything looks okay. The dimensionality must not be too
+ * great and the dimensionality of the items selected for printing must
+ * match the dimensionality of the dataset.
+ */
+ if (obj_data == DATASET_DATA)
+ f_space = H5Dget_space(dset);
+ else
+ f_space = H5Aget_space(dset);
+
+ ndims = H5Sextent_ndims(f_space);
+ if ((size_t)ndims>NELMTS(sm_size)) return -1;
+
+ /* Assume entire data space to be printed */
+ for (i=0; i<(hsize_t)ndims; i++) p_min_idx[i] = 0;
+ H5Sextent_dims(f_space, p_max_idx, NULL);
+ for (i=0, p_nelmts=1; i<(hsize_t)ndims; i++) {
+ p_nelmts *= p_max_idx[i]-p_min_idx[i];
+ }
+
+ /*
+ * Determine the strip mine size and allocate a buffer. The strip mine is
+ * a hyperslab whose size is manageable.
+ */
+ p_type_nbytes = H5Tget_size(p_type);
+ for (i=ndims, sm_nbytes=p_type_nbytes; i>0; --i) {
+ sm_size[i-1] = MIN (p_max_idx[i-1]-p_min_idx[i-1],
+ H5DUMP_BUFSIZE/sm_nbytes);
+ sm_nbytes *= sm_size[i-1];
+ assert(sm_nbytes>0);
+ }
+ sm_buf = malloc(sm_nbytes);
+ sm_nelmts = sm_nbytes/p_type_nbytes;
+ sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
+
+ /* Local things */
+ if (info->line_ncols>0) p_ncolumns = info->line_ncols;
+
+ /* The stripmine loop */
+ memset(hs_offset, 0, sizeof hs_offset);
+ memset(zero, 0, sizeof zero);
+ for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) {
+
+ /* Calculate the hyperslab size */
+ for (i=0, hs_nelmts=1; i<(hsize_t)ndims; i++) {
+ hs_size[i] = MIN(sm_size[i], p_max_idx[i]-hs_offset[i]);
+ hs_nelmts *= hs_size[i];
+ }
+
+ /* Read the data */
+ H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL,
+ hs_size, NULL);
+ H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL,
+ &hs_nelmts, NULL);
+
+
+ if (obj_data == DATASET_DATA)
+ H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf);
+ else
+ H5Aread(dset, p_type, sm_buf);
+
+ /* Print the data */
+ for (i=0; i<hs_nelmts; i++) {
+ /* Render the element */
+ h5dump_sprint(p_buf, info, p_type, sm_buf+i*p_type_nbytes);
+ if (elmtno+i+1<p_nelmts) {
+ strcat(p_buf, OPT(info->elmt_suf1, ","));
+ }
+
+ /* Print the prefix */
+/*
+ if ((p_column +
+ strlen(p_buf) +
+ strlen(OPT(info->elmt_suf2, " ")) +
+ strlen(OPT(info->line_suf, ""))) > p_ncolumns) {
+ need_prefix = 1;
+ }
+
+ if (need_prefix) {
+ h5dump_prefix(p_prefix, info, elmtno+i, ndims,
+ p_min_idx, p_max_idx);
+ if (p_column) {
+ fputs(OPT(info->line_suf, ""), stream);
+ putc('\n', stream);
+ fputs(OPT(info->line_sep, ""), stream);
+ }
+ fputs(p_prefix, stream);
+ p_column = strlen(p_prefix);
+ need_prefix = 0;
+ } else {
+ fputs(OPT(info->elmt_suf2, " "), stream);
+ p_column += strlen(OPT(info->elmt_suf2, " "));
+
+ }
+
+ */
+
+ fputs(p_buf, stream);
+/*
+ p_column += strlen(p_buf);
+ */
+ }
+
+ /* Calculate the next hyperslab offset */
+ for (i=ndims, carry=1; i>0 && carry; --i) {
+ hs_offset[i-1] += hs_size[i-1];
+ if (hs_offset[i-1]==(hssize_t)p_max_idx[i-1]) {
+ hs_offset[i-1] = p_min_idx[i-1];
+ } else {
+ carry = 0;
+ }
+ }
+ }
+/*
+
+ if (p_column) {
+ fputs(OPT(info->line_suf, ""), stream);
+ putc('\n', stream);
+ fputs(OPT(info->line_sep, ""), stream);
+ }
+ */
+ H5Sclose(sm_space);
+ H5Sclose(f_space);
+ return 0;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump_fixtype
+ *
+ * Purpose: Given a file data type choose a memory data type which is
+ * appropriate for printing the data.
+ *
+ * Return: Success: Memory data type
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static hid_t
+h5dump_fixtype(hid_t f_type)
+{
+ hid_t m_type=-1, f_memb;
+ hid_t *memb=NULL;
+ char **name=NULL;
+ int nmembs, i;
+ size_t size;
+
+ size = H5Tget_size(f_type);
+ switch (H5Tget_class(f_type)) {
+
+ case H5T_INTEGER:
+ /*
+ * Use the smallest native integer type of the same sign as the file
+ * such that the memory type is at least as large as the file type.
+ * If there is no memory type large enough then use the largest
+ * memory type available.
+ */
+ if (size<=sizeof(char)) {
+ m_type = H5Tcopy(H5T_NATIVE_CHAR);
+ } else if (size<=sizeof(short)) {
+ m_type = H5Tcopy(H5T_NATIVE_SHORT);
+ } else if (size<=sizeof(int)) {
+ m_type = H5Tcopy(H5T_NATIVE_INT);
+ } else if (size<=sizeof(long)) {
+ m_type = H5Tcopy(H5T_NATIVE_LONG);
+ } else {
+ m_type = H5Tcopy(H5T_NATIVE_LLONG);
+ }
+ H5Tset_sign(m_type, H5Tget_size(f_type));
+ break;
+
+ case H5T_FLOAT:
+ /*
+ * Use the smallest native floating point type available such that
+ * its size is at least as large as the file type. If there is not
+ * native type large enough then use the largest native type.
+ */
+ if (size<=sizeof(float)) {
+ m_type = H5Tcopy(H5T_NATIVE_FLOAT);
+ } else if (size<=sizeof(double)) {
+ m_type = H5Tcopy(H5T_NATIVE_DOUBLE);
+ } else {
+ m_type = H5Tcopy(H5T_NATIVE_LDOUBLE);
+ }
+ break;
+
+ case H5T_COMPOUND:
+ nmembs = H5Tget_nmembers(f_type);
+ memb = calloc(nmembs, sizeof(hid_t));
+ name = calloc(nmembs, sizeof(char*));
+
+ for (i=0, size=0; i<nmembs; i++) {
+ f_memb = H5Tget_member_type(f_type, i);
+ memb[i] = h5dump_fixtype(f_memb);
+ size = ALIGN(size, H5Tget_size(memb[i])) + H5Tget_size(memb[i]);
+ H5Tclose(f_memb);
+ name[i] = H5Tget_member_name(f_type, i);
+ if (memb[i]<0 || NULL==name[i]) goto done;
+ }
+
+ m_type = H5Tcreate(H5T_COMPOUND, size);
+ for (i=0, size=0; i<nmembs; i++) {
+ H5Tinsert(m_type, name[i], size, memb[i]);
+ size = ALIGN(size, H5Tget_size(memb[i])) + H5Tget_size(memb[i]);
+ }
+ break;
+
+ case H5T_TIME:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ /*
+ * These type classes are not implemented yet.
+ */
+ break;
+
+ default:
+ /* What the heck? */
+ break;
+ }
+
+ done:
+ /* Clean up temp buffers */
+ if (memb && name) {
+ for (i=0; i<nmembs; i++) {
+ if (memb[i]>=0) H5Tclose(memb[i]);
+ if (name[i]) free(name[i]);
+ }
+ free(memb);
+ free(name);
+ }
+
+ return m_type;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: h5dump
+ *
+ * Purpose: Print some values from a dataset. The values to print are
+ * determined by the P_SPACE argument and the format to use to
+ * print them is determined by the P_TYPE argument.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Programmer: Robb Matzke
+ * Thursday, July 23, 1998
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+h5dump1(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type, int obj_data)
+{
+ hid_t f_space;
+ hid_t p_type = _p_type;
+ hid_t f_type;
+ int status;
+
+ /* Check the data space */
+ if (obj_data == DATASET_DATA)
+ f_space = H5Dget_space(dset);
+ else
+ f_space = H5Aget_space(dset);
+
+ if (H5Sis_simple(f_space)<=0) return -1;
+ H5Sclose(f_space);
+
+ /*
+ * Check the data type. If the caller didn't supply a data type then
+ * use an appropriate native data type.
+ */
+
+ if (obj_data == DATASET_DATA)
+ f_type = H5Dget_type(dset);
+ else
+ f_type = H5Aget_type(dset);
+
+ if (p_type<0) {
+ p_type = h5dump_fixtype(f_type);
+ H5Tclose(f_type);
+ if (p_type<0) return -1;
+ }
+
+ /* Print the data */
+ status = h5dump_simple(stream, info, dset, p_type, obj_data);
+ if (p_type!=_p_type) H5Tclose(p_type);
+ return status;
+}
--
cgit v0.12