From f3c2eb9acfd1242618bc314efffac1e0471727e9 Mon Sep 17 00:00:00 2001 From: Allen Byrne Date: Wed, 5 Jan 2011 15:18:16 -0500 Subject: [svn-r19918] Add hh modifier to signed char printf format string. Added h5dump test to verify that signed/unsigned datasets print correctly. Bring solution from 1.8 packed bits fix which solved problem on heiwa with Signed char of 8 bits Tested: local linux --- MANIFEST | 2 + tools/h5dump/CMakeLists.txt | 6 + tools/h5dump/h5dump.c | 6 +- tools/h5dump/h5dumpgentest.c | 208 +++++++++++++++ tools/h5dump/testh5dump.sh.in | 2 + tools/lib/h5tools.c | 2 +- tools/lib/h5tools_str.c | 2 +- tools/testfiles/packedbits.ddl | 572 +++++++++++++++++++++++++++++++++++++++++ tools/testfiles/packedbits.h5 | Bin 0 -> 15968 bytes 9 files changed, 795 insertions(+), 5 deletions(-) create mode 100644 tools/testfiles/packedbits.ddl create mode 100644 tools/testfiles/packedbits.h5 diff --git a/MANIFEST b/MANIFEST index a9f4cd8..378922f 100644 --- a/MANIFEST +++ b/MANIFEST @@ -1165,6 +1165,8 @@ ./tools/testfiles/family_file00015.h5 ./tools/testfiles/family_file00016.h5 ./tools/testfiles/family_file00017.h5 +./tools/testfiles/packedbits.h5 +./tools/testfiles/packedbits.ddl ./tools/testfiles/file_space.h5 ./tools/testfiles/file_space.ddl ./tools/testfiles/tall-1.ddl diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 6f4ea22..2a74419 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -38,6 +38,7 @@ IF (BUILD_TESTING) # Copy all the HDF5 files from the test directory into the source directory # -------------------------------------------------------------------- SET (HDF5_REFERENCE_FILES + packedbits.ddl tall-1.ddl tall-2.ddl tall-2A.ddl @@ -217,6 +218,7 @@ IF (BUILD_TESTING) tbin3.ddl tbin4.ddl out3.h5import + packedbits.h5 taindices.h5 tall.h5 tarray1.h5 @@ -476,6 +478,8 @@ IF (BUILD_TESTING) NAME H5DUMP-clearall-objects COMMAND ${CMAKE_COMMAND} -E remove + packedbits.out + packedbits.out.err tall-1.out tall-1.out.err tall-2.out @@ -699,6 +703,8 @@ IF (BUILD_TESTING) ADD_TEST (NAME H5DUMP-thlink COMMAND h5dump thlink.h5) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + # test for signed/unsigned datasets + ADD_H5_TEST (packedbits 0 packedbits.h5) # test for displaying groups ADD_H5_TEST (tgroup-1 0 tgroup.h5) # test for displaying the selected groups diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 261fe15..33750f3 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -132,7 +132,7 @@ static h5tool_format_t dataformat = { "", /*fmt_raw */ "%d", /*fmt_int */ "%u", /*fmt_uint */ - "%d", /*fmt_schar */ + "%hhd", /*fmt_schar */ "%u", /*fmt_uchar */ "%d", /*fmt_short */ "%u", /*fmt_ushort */ @@ -216,7 +216,7 @@ static h5tool_format_t xml_dataformat = { "", /*fmt_raw */ "%d", /*fmt_int */ "%u", /*fmt_uint */ - "%d", /*fmt_schar */ + "%hhd", /*fmt_schar */ "%u", /*fmt_uchar */ "%d", /*fmt_short */ "%u", /*fmt_ushort */ @@ -3988,7 +3988,7 @@ parse_start: leave(EXIT_SUCCESS); break; case 'w': - nCols = atoi(opt_arg); + nCols = HDatoi(opt_arg); last_was_dset = FALSE; break; case 'a': diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c index 95caa5e..7701651 100644 --- a/tools/h5dump/h5dumpgentest.c +++ b/tools/h5dump/h5dumpgentest.c @@ -95,6 +95,7 @@ /*#define FILE64 "tarray8.h5"*/ #define FILE65 "tattrreg.h5" #define FILE66 "file_space.h5" +#define FILE67 "packedbits.h5" @@ -253,6 +254,22 @@ typedef struct s1_t { #define STRATEGY H5F_FILE_SPACE_AGGR_VFD /* File space handling strategy */ #define THRESHOLD10 10 /* Free space section threshold */ +/* "FILE67" macros */ +#define F67_XDIM 8 +#define F67_DATASETU08 "DU08BITS" +#define F67_DATASETS08 "DS08BITS" +#define F67_YDIM8 8 +#define F67_DATASETU16 "DU16BITS" +#define F67_DATASETS16 "DS16BITS" +#define F67_YDIM16 16 +#define F67_DATASETU32 "DU32BITS" +#define F67_DATASETS32 "DS32BITS" +#define F67_YDIM32 32 +#define F67_DATASETU64 "DU64BITS" +#define F67_DATASETS64 "DS64BITS" +#define F67_YDIM64 64 +#define F67_DUMMYDBL "DummyDBL" + static void gent_group(void) { @@ -6775,6 +6792,196 @@ gent_fs_strategy_threshold(void) } /*------------------------------------------------------------------------- + * Function: gent_packedbits + * + * Purpose: Generate a file to be used in the h5dump packed bits tests. + * Three datasets of 1, 2 and 4 bytes of unsigned int types are created. + * Three more datasets of 1, 2 and 4 bytes of signed int types are created. + * Fill them with raw data such that no bit will be all zero in a dataset. + * A dummy dataset of double type is created for failure test. + * Created: Albert Cheng, 2010/5/10. + * Modified: Allen Byrne, 2011/1/5 Use file to test Signed/Unsigned datatypes + *------------------------------------------------------------------------- + */ +static void +gent_packedbits(void) +{ + hid_t fid, dataset, space; + hsize_t dims[2]; + uint8_t dsetu8[F67_XDIM][F67_YDIM8], valu8bits; + uint16_t dsetu16[F67_XDIM][F67_YDIM16], valu16bits; + uint32_t dsetu32[F67_XDIM][F67_YDIM32], valu32bits; + uint64_t dsetu64[F67_XDIM][F67_YDIM64], valu64bits; + int8_t dset8[F67_XDIM][F67_YDIM8], val8bits; + int16_t dset16[F67_XDIM][F67_YDIM16], val16bits; + int32_t dset32[F67_XDIM][F67_YDIM32], val32bits; + int64_t dset64[F67_XDIM][F67_YDIM64], val64bits; + double dsetdbl[F67_XDIM][F67_YDIM8]; + unsigned int i, j; + + fid = H5Fcreate(FILE66, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* Dataset of 8 bits unsigned int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM8; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETU08, H5T_STD_U8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + valu8bits = (uint8_t) ~0u; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dsetu8[i][0] = valu8bits; + for(j = 1; j < dims[1]; j++) { + dsetu8[i][j] = dsetu8[i][j-1] << 1; + } + valu8bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_UINT8, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu8); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 16 bits unsigned int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM16; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + valu16bits = (uint16_t) ~0u; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dsetu16[i][0] = valu16bits; + for(j = 1; j < dims[1]; j++) { + dsetu16[i][j] = dsetu16[i][j-1] << 1; + } + valu16bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_UINT16, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu16); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 32 bits unsigned int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM32; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + valu32bits = (uint32_t) ~0u; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dsetu32[i][0] = valu32bits; + for(j = 1; j < dims[1]; j++) { + dsetu32[i][j] = dsetu32[i][j-1] << 1; + } + valu32bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_UINT32, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu32); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 64 bits unsigned int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM64; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETU64, H5T_STD_U64LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + valu64bits = (uint64_t) ~0Lu; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dsetu64[i][0] = valu64bits; + for(j = 1; j < dims[1]; j++) { + dsetu64[i][j] = dsetu64[i][j-1] << 1; + } + valu64bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_UINT64, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetu64); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 8 bits signed int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM8; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + val8bits = (int8_t) ~0; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dset8[i][0] = val8bits; + for(j = 1; j < dims[1]; j++) { + dset8[i][j] = dset8[i][j-1] << 1; + } + val8bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_INT8, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset8); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 16 bits signed int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM16; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + val16bits = (int16_t) ~0; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dset16[i][0] = val16bits; + for(j = 1; j < dims[1]; j++) { + dset16[i][j] = dset16[i][j-1] << 1; + } + val16bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_INT16, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset16); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 32 bits signed int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM32; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + val32bits = (int32_t) ~0; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dset32[i][0] = val32bits; + for(j = 1; j < dims[1]; j++) { + dset32[i][j] = dset32[i][j-1] << 1; + } + val32bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_INT32, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset32); + H5Sclose(space); + H5Dclose(dataset); + + /* Dataset of 64 bits signed int */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM64; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DATASETS64, H5T_STD_I64LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + val64bits = (int64_t) ~0L; /* all 1s */ + for(i = 0; i < dims[0]; i++){ + dset64[i][0] = val64bits; + for(j = 1; j < dims[1]; j++) { + dset64[i][j] = dset64[i][j-1] << 1; + } + val64bits <<= 1; + } + + H5Dwrite(dataset, H5T_NATIVE_INT64, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset64); + H5Sclose(space); + H5Dclose(dataset); + + /* Double Dummy set for failure tests */ + dims[0] = F67_XDIM; dims[1] = F67_YDIM8; + space = H5Screate_simple(2, dims, NULL); + dataset = H5Dcreate2(fid, F67_DUMMYDBL, H5T_IEEE_F64BE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + for(i = 0; i < dims[0]; i++) + for(j = 0; j < dims[1]; j++) + dsetdbl[i][j] = 0.0001 * j + i; + + H5Dwrite(dataset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dsetdbl); + + H5Sclose(space); + H5Dclose(dataset); + H5Fclose(fid); +} + +/*------------------------------------------------------------------------- * Function: main * *------------------------------------------------------------------------- @@ -6847,6 +7054,7 @@ int main(void) gent_fpformat(); gent_extlinks(); gent_fs_strategy_threshold(); + gent_packedbits(); return 0; } diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index 50ff098..c29297e 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -270,6 +270,8 @@ IMPORTTEST() ############################################################################## ############################################################################## +# test for signed/unsigned datasets +TOOLTEST packedbits.ddl packedbits.h5 # test for displaying groups TOOLTEST tgroup-1.ddl tgroup.h5 # test for displaying the selected groups diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 896c310..7aee7bc 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -49,7 +49,7 @@ static h5tool_format_t h5tools_dataformat = { "", /*fmt_raw */ "%d", /*fmt_int */ "%u", /*fmt_uint */ -"%d", /*fmt_schar */ +"%hhd", /*fmt_schar */ "%u", /*fmt_uchar */ "%d", /*fmt_short */ "%u", /*fmt_ushort */ diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index c5f10b8..8c9960f 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -789,7 +789,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai h5tools_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); } else if (H5Tequal(type, H5T_NATIVE_SCHAR)) { - h5tools_str_append(str, OPT(info->fmt_schar, "%d"), *cp_vp); + h5tools_str_append(str, OPT(info->fmt_schar, "%hhd"), *cp_vp); } else if (H5Tequal(type, H5T_NATIVE_UCHAR)) { h5tools_str_append(str, OPT(info->fmt_uchar, "%u"), *ucp_vp); diff --git a/tools/testfiles/packedbits.ddl b/tools/testfiles/packedbits.ddl new file mode 100644 index 0000000..91bd63b --- /dev/null +++ b/tools/testfiles/packedbits.ddl @@ -0,0 +1,572 @@ +############################# +Expected output for 'h5dump packedbits.h5' +############################# +HDF5 "packedbits.h5" { +GROUP "/" { + DATASET "DS08BITS" { + DATATYPE H5T_STD_I8LE + DATASPACE SIMPLE { ( 8, 8 ) / ( 8, 8 ) } + DATA { + (0,0): -1, -2, -4, -8, -16, -32, -64, -128, + (1,0): -2, -4, -8, -16, -32, -64, -128, 0, + (2,0): -4, -8, -16, -32, -64, -128, 0, 0, + (3,0): -8, -16, -32, -64, -128, 0, 0, 0, + (4,0): -16, -32, -64, -128, 0, 0, 0, 0, + (5,0): -32, -64, -128, 0, 0, 0, 0, 0, + (6,0): -64, -128, 0, 0, 0, 0, 0, 0, + (7,0): -128, 0, 0, 0, 0, 0, 0, 0 + } + } + DATASET "DS16BITS" { + DATATYPE H5T_STD_I16LE + DATASPACE SIMPLE { ( 8, 16 ) / ( 8, 16 ) } + DATA { + (0,0): -1, -2, -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, + (0,12): -4096, -8192, -16384, -32768, + (1,0): -2, -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, + (1,11): -4096, -8192, -16384, -32768, 0, + (2,0): -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, + (2,11): -8192, -16384, -32768, 0, 0, + (3,0): -8, -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, + (3,11): -16384, -32768, 0, 0, 0, + (4,0): -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, + (4,10): -16384, -32768, 0, 0, 0, 0, + (5,0): -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, -16384, + (5,10): -32768, 0, 0, 0, 0, 0, + (6,0): -64, -128, -256, -512, -1024, -2048, -4096, -8192, -16384, + (6,9): -32768, 0, 0, 0, 0, 0, 0, + (7,0): -128, -256, -512, -1024, -2048, -4096, -8192, -16384, -32768, 0, + (7,10): 0, 0, 0, 0, 0, 0 + } + } + DATASET "DS32BITS" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 8, 32 ) / ( 8, 32 ) } + DATA { + (0,0): -1, -2, -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, + (0,12): -4096, -8192, -16384, -32768, -65536, -131072, -262144, + (0,19): -524288, -1048576, -2097152, -4194304, -8388608, -16777216, + (0,25): -33554432, -67108864, -134217728, -268435456, -536870912, + (0,30): -1073741824, -2147483648, + (1,0): -2, -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, + (1,11): -4096, -8192, -16384, -32768, -65536, -131072, -262144, + (1,18): -524288, -1048576, -2097152, -4194304, -8388608, -16777216, + (1,24): -33554432, -67108864, -134217728, -268435456, -536870912, + (1,29): -1073741824, -2147483648, 0, + (2,0): -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, + (2,11): -8192, -16384, -32768, -65536, -131072, -262144, -524288, + (2,18): -1048576, -2097152, -4194304, -8388608, -16777216, -33554432, + (2,24): -67108864, -134217728, -268435456, -536870912, -1073741824, + (2,29): -2147483648, 0, 0, + (3,0): -8, -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, + (3,11): -16384, -32768, -65536, -131072, -262144, -524288, -1048576, + (3,18): -2097152, -4194304, -8388608, -16777216, -33554432, -67108864, + (3,24): -134217728, -268435456, -536870912, -1073741824, -2147483648, + (3,29): 0, 0, 0, + (4,0): -16, -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, + (4,10): -16384, -32768, -65536, -131072, -262144, -524288, -1048576, + (4,17): -2097152, -4194304, -8388608, -16777216, -33554432, -67108864, + (4,23): -134217728, -268435456, -536870912, -1073741824, -2147483648, + (4,28): 0, 0, 0, 0, + (5,0): -32, -64, -128, -256, -512, -1024, -2048, -4096, -8192, -16384, + (5,10): -32768, -65536, -131072, -262144, -524288, -1048576, -2097152, + (5,17): -4194304, -8388608, -16777216, -33554432, -67108864, + (5,22): -134217728, -268435456, -536870912, -1073741824, -2147483648, + (5,27): 0, 0, 0, 0, 0, + (6,0): -64, -128, -256, -512, -1024, -2048, -4096, -8192, -16384, + (6,9): -32768, -65536, -131072, -262144, -524288, -1048576, -2097152, + (6,16): -4194304, -8388608, -16777216, -33554432, -67108864, + (6,21): -134217728, -268435456, -536870912, -1073741824, -2147483648, + (6,26): 0, 0, 0, 0, 0, 0, + (7,0): -128, -256, -512, -1024, -2048, -4096, -8192, -16384, -32768, + (7,9): -65536, -131072, -262144, -524288, -1048576, -2097152, -4194304, + (7,16): -8388608, -16777216, -33554432, -67108864, -134217728, + (7,21): -268435456, -536870912, -1073741824, -2147483648, 0, 0, 0, 0, + (7,29): 0, 0, 0 + } + } + DATASET "DS64BITS" { + DATATYPE H5T_STD_I64LE + DATASPACE SIMPLE { ( 8, 64 ) / ( 8, 64 ) } + DATA { + (0,0): -1, -2, -4, -8, -16, -32, -64, -128, -256, -512, -1024, -2048, + (0,12): -4096, -8192, -16384, -32768, -65536, -131072, -262144, + (0,19): -524288, -1048576, -2097152, -4194304, -8388608, -16777216, + (0,25): -33554432, -67108864, -134217728, -268435456, -536870912, + (0,30): -1073741824, -2147483648, -4294967296, -8589934592, + (0,34): -17179869184, -34359738368, -68719476736, -137438953472, + (0,38): -274877906944, -549755813888, -1099511627776, -2199023255552, + (0,42): -4398046511104, -8796093022208, -17592186044416, + (0,45): -35184372088832, -70368744177664, 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