From 2417775bb30df026868a547300b54635036f768c Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 08:58:35 -0500
Subject: DT location incorrect

---
 java/test/junit.sh.in | 149 +++++++++++++++++++++++++-------------------------
 1 file changed, 74 insertions(+), 75 deletions(-)

diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index dcf62ec..8587ca9 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -41,7 +41,6 @@ myos=`uname -s`
 # where the libs exist
 HDFLIB_HOME="$top_srcdir/java/lib"
 BLDLIBDIR="$top_builddir/hdf5/lib"
-BLDINSDIR="$top_builddir/../hdf5/lib"
 BLDDIR="."
 HDFTEST_HOME="$top_srcdir/java/test"
 JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
@@ -126,9 +125,9 @@ COPY_LIBFILES_TO_BLDLIBDIR()
             # make cp fail
             SDIR=`$DIRNAME $tstfile`
             INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
-            INODE_DDIR=`$LS -i -d $BLDINSDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
             if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-                $CP -f $tstfile $BLDINSDIR
+                $CP -f $tstfile $BLDLIBDIR
                 if [ $? -ne 0 ]; then
                     echo "Error: FAILED to copy $tstfile ."
 
@@ -289,9 +288,9 @@ esac
 
 export LD_LIBRARY_PATH
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5"
 TESTING JUnit-TestH5
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5 > JUnit-TestH5.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5 > JUnit-TestH5.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -310,9 +309,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5.txt JUnit-TestH5.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams"
 TESTING JUnit-TestH5Eparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams > JUnit-TestH5Eparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eparams > JUnit-TestH5Eparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -331,9 +330,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Eparams.txt JUnit-TestH5Eparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister"
 TESTING JUnit-TestH5Eregister
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister > JUnit-TestH5Eregister.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Eregister > JUnit-TestH5Eregister.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -352,9 +351,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Eregister.txt JUnit-TestH5Eregister.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams"
 TESTING JUnit-TestH5Fparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams > JUnit-TestH5Fparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fparams > JUnit-TestH5Fparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -373,9 +372,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Fparams.txt JUnit-TestH5Fparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic"
 TESTING JUnit-TestH5Fbasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic > JUnit-TestH5Fbasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fbasic > JUnit-TestH5Fbasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -394,9 +393,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Fbasic.txt JUnit-TestH5Fbasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F"
 TESTING JUnit-TestH5F
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F > JUnit-TestH5F.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5F > JUnit-TestH5F.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -415,9 +414,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5F.txt JUnit-TestH5F.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr"
 TESTING JUnit-TestH5Fswmr
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr > JUnit-TestH5Fswmr.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Fswmr > JUnit-TestH5Fswmr.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -436,9 +435,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Fswmr.txt JUnit-TestH5Fswmr.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic"
 TESTING JUnit-TestH5Gbasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic > JUnit-TestH5Gbasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Gbasic > JUnit-TestH5Gbasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -457,9 +456,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Gbasic.txt JUnit-TestH5Gbasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G"
 TESTING JUnit-TestH5G
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G > JUnit-TestH5G.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5G > JUnit-TestH5G.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -478,9 +477,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5G.txt JUnit-TestH5G.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic"
 TESTING JUnit-TestH5Sbasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic > JUnit-TestH5Sbasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Sbasic > JUnit-TestH5Sbasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -499,9 +498,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Sbasic.txt JUnit-TestH5Sbasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S"
 TESTING JUnit-TestH5S
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S > JUnit-TestH5S.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5S > JUnit-TestH5S.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -520,9 +519,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5S.txt JUnit-TestH5S.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams"
 TESTING JUnit-TestH5Tparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams > JUnit-TestH5Tparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tparams > JUnit-TestH5Tparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -541,9 +540,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Tparams.txt JUnit-TestH5Tparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic"
 TESTING JUnit-TestH5Tbasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic > JUnit-TestH5Tbasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Tbasic > JUnit-TestH5Tbasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -562,9 +561,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Tbasic.txt JUnit-TestH5Tbasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T"
 TESTING JUnit-TestH5T
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T > JUnit-TestH5T.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5T > JUnit-TestH5T.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -583,9 +582,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5T.txt JUnit-TestH5T.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams"
 TESTING JUnit-TestH5Dparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams > JUnit-TestH5Dparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dparams > JUnit-TestH5Dparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -604,9 +603,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Dparams.txt JUnit-TestH5Dparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D"
 TESTING JUnit-TestH5D
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D > JUnit-TestH5D.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5D > JUnit-TestH5D.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -625,9 +624,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5D.txt JUnit-TestH5D.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist"
 TESTING JUnit-TestH5Dplist
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist > JUnit-TestH5Dplist.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Dplist > JUnit-TestH5Dplist.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -646,9 +645,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Dplist.txt JUnit-TestH5Dplist.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams"
 TESTING JUnit-TestH5Lparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams > JUnit-TestH5Lparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lparams > JUnit-TestH5Lparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -667,9 +666,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Lparams.txt JUnit-TestH5Lparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic"
 TESTING JUnit-TestH5Lbasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic > JUnit-TestH5Lbasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lbasic > JUnit-TestH5Lbasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -688,9 +687,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Lbasic.txt JUnit-TestH5Lbasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate"
 TESTING JUnit-TestH5Lcreate
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate > JUnit-TestH5Lcreate.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Lcreate > JUnit-TestH5Lcreate.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -709,9 +708,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Lcreate.txt JUnit-TestH5Lcreate.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R"
 TESTING JUnit-TestH5R
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R > JUnit-TestH5R.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5R > JUnit-TestH5R.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -730,9 +729,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5R.txt JUnit-TestH5R.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P"
 TESTING JUnit-TestH5P
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P > JUnit-TestH5P.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P > JUnit-TestH5P.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -751,9 +750,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5P.txt JUnit-TestH5P.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData"
 TESTING JUnit-TestH5PData
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData > JUnit-TestH5PData.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PData > JUnit-TestH5PData.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -772,9 +771,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5PData.txt JUnit-TestH5PData.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl"
 TESTING JUnit-TestH5Pfapl
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl > JUnit-TestH5Pfapl.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pfapl > JUnit-TestH5Pfapl.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -793,9 +792,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Pfapl.txt JUnit-TestH5Pfapl.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual"
 TESTING JUnit-TestH5Pvirtual
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual > JUnit-TestH5Pvirtual.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Pvirtual > JUnit-TestH5Pvirtual.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -814,9 +813,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Pvirtual.txt JUnit-TestH5Pvirtual.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist"
 TESTING JUnit-TestH5Plist
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist > JUnit-TestH5Plist.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Plist > JUnit-TestH5Plist.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -835,9 +834,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Plist.txt JUnit-TestH5Plist.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A"
 TESTING JUnit-TestH5A
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A > JUnit-TestH5A.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5A > JUnit-TestH5A.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -856,9 +855,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5A.txt JUnit-TestH5A.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams"
 TESTING JUnit-TestH5Oparams
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams > JUnit-TestH5Oparams.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Oparams > JUnit-TestH5Oparams.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -877,9 +876,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Oparams.txt JUnit-TestH5Oparams.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic"
 TESTING JUnit-TestH5Obasic
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic > JUnit-TestH5Obasic.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Obasic > JUnit-TestH5Obasic.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -898,9 +897,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Obasic.txt JUnit-TestH5Obasic.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate"
 TESTING JUnit-TestH5Ocreate
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate > JUnit-TestH5Ocreate.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocreate > JUnit-TestH5Ocreate.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -919,9 +918,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Ocreate.txt JUnit-TestH5Ocreate.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy"
 TESTING JUnit-TestH5Ocopy
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy > JUnit-TestH5Ocopy.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Ocopy > JUnit-TestH5Ocopy.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -940,9 +939,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5Ocopy.txt JUnit-TestH5Ocopy.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL"
 TESTING JUnit-TestH5PL
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL > JUnit-TestH5PL.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5PL > JUnit-TestH5PL.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -961,9 +960,9 @@ else
     test yes = "$verbose" && $DIFF JUnit-TestH5PL.txt JUnit-TestH5PL.out |sed 's/^/    /'
 fi
 
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z"
+echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z"
 TESTING JUnit-TestH5Z
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z > JUnit-TestH5Z.ext)
+($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Z > JUnit-TestH5Z.ext)
 
 # Extract file name, line number, version and thread IDs because they may be different
 sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -984,9 +983,9 @@ fi
 
 if test "X-$BUILD_MODE" = "X-production" ; then
     if test $USE_FILTER_SZIP = "yes"; then
-        echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E"
+        echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E"
         TESTING JUnit-TestH5E
-        ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E > JUnit-TestH5E.ext)
+        ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E > JUnit-TestH5E.ext)
 
         # Extract file name, line number, version and thread IDs because they may be different
         sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -1007,9 +1006,9 @@ if test "X-$BUILD_MODE" = "X-production" ; then
     fi
 
     if test $USE_FILTER_SZIP = "yes"; then
-        echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault"
+        echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault"
         TESTING JUnit-TestH5Edefault
-        ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault > JUnit-TestH5Edefault.ext)
+        ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Edefault > JUnit-TestH5Edefault.ext)
 
         # Extract file name, line number, version and thread IDs because they may be different
         sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
@@ -1030,9 +1029,9 @@ if test "X-$BUILD_MODE" = "X-production" ; then
     fi
 fi
 if test $USE_FILTER_SZIP = "yes"; then
-    echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate"
+    echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate"
     TESTING JUnit-TestH5Giterate
-    ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR:$BLDINSDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate > JUnit-TestH5Giterate.ext)
+    ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Giterate > JUnit-TestH5Giterate.ext)
 
     # Extract file name, line number, version and thread IDs because they may be different
     sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
-- 
cgit v0.12


From a87f597d89ce1ba34410de8407bb80346578b3da Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 09:40:22 -0500
Subject: Correct name of osx installer

---
 config/cmake_ext_mod/HDFMacros.cmake | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/config/cmake_ext_mod/HDFMacros.cmake b/config/cmake_ext_mod/HDFMacros.cmake
index 791fe2e..f1d5e1d 100644
--- a/config/cmake_ext_mod/HDFMacros.cmake
+++ b/config/cmake_ext_mod/HDFMacros.cmake
@@ -280,7 +280,7 @@ macro (HDF_README_PROPERTIES target_fortran)
     endif ()
   elseif (APPLE)
     set (BINARY_EXAMPLE_ENDING "tar.gz")
-    set (BINARY_INSTALL_ENDING "dmg")
+    set (BINARY_INSTALL_ENDING "sh") # if packaging changes - use dmg
     set (BINARY_PLATFORM "${BINARY_PLATFORM} ${CMAKE_SYSTEM_VERSION} ${CMAKE_SYSTEM_PROCESSOR}")
     set (BINARY_PLATFORM "${BINARY_PLATFORM}, using ${CMAKE_C_COMPILER_ID} C ${CMAKE_C_COMPILER_VERSION}")
   else ()
-- 
cgit v0.12


From 0651432031c7525f05ab1700619250cfb6d15db1 Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 13:19:35 -0500
Subject: Remove obsolete var

---
 java/test/junit.sh.in | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index 8587ca9..21025c7 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -282,7 +282,7 @@ fi
 
 case  $os_name in
     *)
-    LD_LIBRARY_PATH=$BLDLIBDIR:$BLDINSDIR:$LD_LIBRARY_PATH
+    LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
     ;;
 esac
 
-- 
cgit v0.12


From d9d78f705ed2311737a127f985c6e4c81e2be58e Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 14:21:16 -0500
Subject: Only remove test jars

---
 java/test/junit.sh.in | 37 +++++++++++++++++++++++++++++++++----
 1 file changed, 33 insertions(+), 4 deletions(-)

diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index 21025c7..4f76d4e 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -59,11 +59,13 @@ LIST_LIBRARY_FILES="
 $top_builddir/src/.libs/libhdf5.*
 $top_builddir/java/src/jni/.libs/libhdf5_java.*
 "
-LIST_JAR_FILES="
+LIST_JAR_TESTFILES="
 $HDFLIB_HOME/hamcrest-core.jar
 $HDFLIB_HOME/junit.jar
-$HDFLIB_HOME/slf4j-api-1.7.25.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
+$HDFLIB_HOME/slf4j-api-1.7.5.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar
+"
+LIST_JAR_FILES="
 $top_builddir/java/src/$JARFILE
 "
 LIST_DATA_FILES="
@@ -109,6 +111,7 @@ $HDFTEST_HOME/testfiles/JUnit-TestH5Giterate.txt
 # copy files from source dirs to test dir
 #
 COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
 COPY_JARFILES="$LIST_JAR_FILES"
 
 COPY_LIBFILES_TO_BLDLIBDIR()
@@ -138,6 +141,29 @@ COPY_LIBFILES_TO_BLDLIBDIR()
         fi
     done
     # copy jar files. Used -f to make sure get a new copy
+    for tstfile in $COPY_JARTESTFILES
+    do
+        # ignore '#' comment
+        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+        RET=$?
+        if [ $RET -eq 1 ]; then
+            # skip cp if srcdir is same as destdir
+            # this occurs when build/test performed in source dir and
+            # make cp fail
+            SDIR=`$DIRNAME $tstfile`
+            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+                $CP -f $tstfile $BLDLIBDIR
+                if [ $? -ne 0 ]; then
+                    echo "Error: FAILED to copy $tstfile ."
+
+                    # Comment out this to CREATE expected file
+                    exit $EXIT_FAILURE
+                fi
+            fi
+        fi
+    done
     for tstfile in $COPY_JARFILES
     do
         # ignore '#' comment
@@ -172,7 +198,10 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
     INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
     INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
     if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $BLDLIBDIR
+        for tstfile in $COPY_JARTESTFILES
+        do
+            $RM $BLDLIBDIR/tstfile
+        done
     fi
 }
 
-- 
cgit v0.12


From 22eda96a9c2b7d0ad45b5cf50a84458497ee9609 Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 14:53:05 -0500
Subject: Correct name of test jar

---
 java/test/junit.sh.in | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in
index 4f76d4e..02d0147 100644
--- a/java/test/junit.sh.in
+++ b/java/test/junit.sh.in
@@ -62,8 +62,8 @@ $top_builddir/java/src/jni/.libs/libhdf5_java.*
 LIST_JAR_TESTFILES="
 $HDFLIB_HOME/hamcrest-core.jar
 $HDFLIB_HOME/junit.jar
-$HDFLIB_HOME/slf4j-api-1.7.5.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.5.jar
+$HDFLIB_HOME/slf4j-api-1.7.25.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 "
 LIST_JAR_FILES="
 $top_builddir/java/src/$JARFILE
-- 
cgit v0.12


From 958c7bd8335d4348218f75d52e4fb51192526c14 Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 16:30:13 -0500
Subject: Same changes needed for examples as test

---
 java/examples/datasets/JavaDatasetExample.sh.in   | 45 ++++++++++++++++++-----
 java/examples/datatypes/JavaDatatypeExample.sh.in | 43 +++++++++++++++++-----
 java/examples/groups/JavaGroupExample.sh.in       | 45 +++++++++++++++++------
 java/examples/intro/JavaIntroExample.sh.in        | 43 +++++++++++++++++-----
 4 files changed, 136 insertions(+), 40 deletions(-)

diff --git a/java/examples/datasets/JavaDatasetExample.sh.in b/java/examples/datasets/JavaDatasetExample.sh.in
index cb16d45..f5c63cd 100644
--- a/java/examples/datasets/JavaDatasetExample.sh.in
+++ b/java/examples/datasets/JavaDatasetExample.sh.in
@@ -52,12 +52,14 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
 #       Comment '#' without space can be used.
 # --------------------------------------------------------------------
 LIST_LIBRARY_FILES="
-$HDFLIB_HOME/slf4j-api-1.7.25.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 $top_builddir/src/.libs/libhdf5.*
 $top_builddir/java/src/jni/.libs/libhdf5_java.*
 $top_builddir/java/src/$JARFILE
 "
+LIST_JAR_TESTFILES="
+$HDFLIB_HOME/slf4j-api-1.7.25.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
+"
 LIST_DATA_FILES="
 $HDFTEST_HOME/../testfiles/examples.datasets.H5Ex_D_Alloc.txt
 $HDFTEST_HOME/../testfiles/examples.datasets.H5Ex_D_Checksum.txt
@@ -83,6 +85,7 @@ $HDFTEST_HOME/../testfiles/examples.datasets.H5Ex_D_Soint.txt
 # copy files from source dirs to test dir
 #
 COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
 
 COPY_LIBFILES_TO_BLDLIBDIR()
 {
@@ -110,6 +113,30 @@ COPY_LIBFILES_TO_BLDLIBDIR()
             fi
         fi
     done
+    # copy jar files. Used -f to make sure get a new copy
+    for tstfile in $COPY_JARTESTFILES
+    do
+        # ignore '#' comment
+        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+        RET=$?
+        if [ $RET -eq 1 ]; then
+            # skip cp if srcdir is same as destdir
+            # this occurs when build/test performed in source dir and
+            # make cp fail
+            SDIR=`$DIRNAME $tstfile`
+            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+                $CP -f $tstfile $BLDLIBDIR
+                if [ $? -ne 0 ]; then
+                    echo "Error: FAILED to copy $tstfile ."
+
+                    # Comment out this to CREATE expected file
+                    exit $EXIT_FAILURE
+                fi
+            fi
+        fi
+    done
 }
 
 CLEAN_LIBFILES_AND_BLDLIBDIR()
@@ -117,11 +144,14 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
     # skip rm if srcdir is same as destdir
     # this occurs when build/test performed in source dir and
     # make cp fail
-    SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar`
+    SDIR=$HDFLIB_HOME
     INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
     INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
     if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $BLDLIBDIR
+        for tstfile in $COPY_JARTESTFILES
+        do
+            $RM $BLDLIBDIR/tstfile
+        done
     fi
 }
 
@@ -215,14 +245,9 @@ if $TEST -z "$LD_LIBRARY_PATH" ; then
 fi
 
 case  $os_name in
-    Darwin)
-    DYLD_LIBRARY_PATH=$BLDLIBDIR:$DYLD_LIBRARY_PATH
-    export DYLD_LIBRARY_PATH
-    LD_LIBRARY_PATH=$DYLD_LIBRARY_PATH
-    ;;
     *)
     LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
-        ;;
+    ;;
 esac
 
 export LD_LIBRARY_PATH
diff --git a/java/examples/datatypes/JavaDatatypeExample.sh.in b/java/examples/datatypes/JavaDatatypeExample.sh.in
index 033442a..447512a 100644
--- a/java/examples/datatypes/JavaDatatypeExample.sh.in
+++ b/java/examples/datatypes/JavaDatatypeExample.sh.in
@@ -49,12 +49,14 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
 #       Comment '#' without space can be used.
 # --------------------------------------------------------------------
 LIST_LIBRARY_FILES="
-$HDFLIB_HOME/slf4j-api-1.7.25.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 $top_builddir/src/.libs/libhdf5.*
 $top_builddir/java/src/jni/.libs/libhdf5_java.*
 $top_builddir/java/src/$JARFILE
 "
+LIST_JAR_TESTFILES="
+$HDFLIB_HOME/slf4j-api-1.7.25.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
+"
 LIST_DATA_FILES="
 $HDFTEST_HOME/../testfiles/examples.datatypes.H5Ex_T_Array.txt
 $HDFTEST_HOME/../testfiles/examples.datatypes.H5Ex_T_ArrayAttribute.txt
@@ -80,6 +82,7 @@ $HDFTEST_HOME/../testfiles/examples.datatypes.H5Ex_T_VLString.txt
 # copy files from source dirs to test dir
 #
 COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
 
 COPY_LIBFILES_TO_BLDLIBDIR()
 {
@@ -107,6 +110,30 @@ COPY_LIBFILES_TO_BLDLIBDIR()
             fi
         fi
     done
+    # copy jar files. Used -f to make sure get a new copy
+    for tstfile in $COPY_JARTESTFILES
+    do
+        # ignore '#' comment
+        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+        RET=$?
+        if [ $RET -eq 1 ]; then
+            # skip cp if srcdir is same as destdir
+            # this occurs when build/test performed in source dir and
+            # make cp fail
+            SDIR=`$DIRNAME $tstfile`
+            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+                $CP -f $tstfile $BLDLIBDIR
+                if [ $? -ne 0 ]; then
+                    echo "Error: FAILED to copy $tstfile ."
+
+                    # Comment out this to CREATE expected file
+                    exit $EXIT_FAILURE
+                fi
+            fi
+        fi
+    done
 }
 
 CLEAN_LIBFILES_AND_BLDLIBDIR()
@@ -114,11 +141,14 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
     # skip rm if srcdir is same as destdir
     # this occurs when build/test performed in source dir and
     # make cp fail
-    SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar`
+    SDIR=$HDFLIB_HOME
     INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
     INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
     if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $BLDLIBDIR
+        for tstfile in $COPY_JARTESTFILES
+        do
+            $RM $BLDLIBDIR/tstfile
+        done
     fi
 }
 
@@ -211,11 +241,6 @@ if $TEST -z "$LD_LIBRARY_PATH" ; then
 fi
 
 case  $os_name in
-    Darwin)
-    DYLD_LIBRARY_PATH=$BLDLIBDIR:$DYLD_LIBRARY_PATH
-    export DYLD_LIBRARY_PATH
-    LD_LIBRARY_PATH=$DYLD_LIBRARY_PATH
-    ;;
     *)
     LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
     ;;
diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in
index 36df02e..7bcd7c5 100644
--- a/java/examples/groups/JavaGroupExample.sh.in
+++ b/java/examples/groups/JavaGroupExample.sh.in
@@ -51,15 +51,13 @@ test -d $BLDREFDIR || mkdir -p $BLDREFDIR
 #       Comment '#' without space can be used.
 # --------------------------------------------------------------------
 LIST_LIBRARY_FILES="
-$HDFLIB_HOME/slf4j-api-1.7.25.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 $top_builddir/src/.libs/libhdf5.*
 $top_builddir/java/src/jni/.libs/libhdf5_java.*
 $top_builddir/java/src/$JARFILE
 "
-LIST_REF_FILES="
-$HDFTEST_HOME/h5ex_g_iterate.h5
-$HDFTEST_HOME/h5ex_g_visit.h5
+LIST_JAR_TESTFILES="
+$HDFLIB_HOME/slf4j-api-1.7.25.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 "
 LIST_DATA_FILES="
 $HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Create.txt
@@ -75,6 +73,7 @@ $HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Visit.txt
 # copy files from source dirs to test dir
 #
 COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
 
 COPY_LIBFILES_TO_BLDLIBDIR()
 {
@@ -102,6 +101,30 @@ COPY_LIBFILES_TO_BLDLIBDIR()
             fi
         fi
     done
+    # copy jar files. Used -f to make sure get a new copy
+    for tstfile in $COPY_JARTESTFILES
+    do
+        # ignore '#' comment
+        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+        RET=$?
+        if [ $RET -eq 1 ]; then
+            # skip cp if srcdir is same as destdir
+            # this occurs when build/test performed in source dir and
+            # make cp fail
+            SDIR=`$DIRNAME $tstfile`
+            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+                $CP -f $tstfile $BLDLIBDIR
+                if [ $? -ne 0 ]; then
+                    echo "Error: FAILED to copy $tstfile ."
+
+                    # Comment out this to CREATE expected file
+                    exit $EXIT_FAILURE
+                fi
+            fi
+        fi
+    done
 }
 
 CLEAN_LIBFILES_AND_BLDLIBDIR()
@@ -109,11 +132,14 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
     # skip rm if srcdir is same as destdir
     # this occurs when build/test performed in source dir and
     # make cp fail
-    SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar`
+    SDIR=$HDFLIB_HOME
     INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
     INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
     if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $BLDLIBDIR
+        for tstfile in $COPY_JARTESTFILES
+        do
+            $RM $BLDLIBDIR/tstfile
+        done
     fi
 }
 
@@ -257,11 +283,6 @@ if $TEST -z "$LD_LIBRARY_PATH" ; then
 fi
 
 case  $os_name in
-    Darwin)
-    DYLD_LIBRARY_PATH=$BLDLIBDIR:$DYLD_LIBRARY_PATH
-    export DYLD_LIBRARY_PATH
-    LD_LIBRARY_PATH=$DYLD_LIBRARY_PATH
-    ;;
     *)
     LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
     ;;
diff --git a/java/examples/intro/JavaIntroExample.sh.in b/java/examples/intro/JavaIntroExample.sh.in
index 077146d..1886485 100644
--- a/java/examples/intro/JavaIntroExample.sh.in
+++ b/java/examples/intro/JavaIntroExample.sh.in
@@ -49,12 +49,14 @@ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
 #       Comment '#' without space can be used.
 # --------------------------------------------------------------------
 LIST_LIBRARY_FILES="
-$HDFLIB_HOME/slf4j-api-1.7.25.jar
-$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 $top_builddir/src/.libs/libhdf5.*
 $top_builddir/java/src/jni/.libs/libhdf5_java.*
 $top_builddir/java/src/$JARFILE
 "
+LIST_JAR_TESTFILES="
+$HDFLIB_HOME/slf4j-api-1.7.25.jar
+$HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
+"
 LIST_DATA_FILES="
 $HDFTEST_HOME/../testfiles/examples.intro.H5_CreateDataset.txt
 $HDFTEST_HOME/../testfiles/examples.intro.H5_CreateAttribute.txt
@@ -69,6 +71,7 @@ $HDFTEST_HOME/../testfiles/examples.intro.H5_ReadWrite.txt
 # copy files from source dirs to test dir
 #
 COPY_LIBFILES="$LIST_LIBRARY_FILES"
+COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
 
 COPY_LIBFILES_TO_BLDLIBDIR()
 {
@@ -96,6 +99,30 @@ COPY_LIBFILES_TO_BLDLIBDIR()
             fi
         fi
     done
+    # copy jar files. Used -f to make sure get a new copy
+    for tstfile in $COPY_JARTESTFILES
+    do
+        # ignore '#' comment
+        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+        RET=$?
+        if [ $RET -eq 1 ]; then
+            # skip cp if srcdir is same as destdir
+            # this occurs when build/test performed in source dir and
+            # make cp fail
+            SDIR=`$DIRNAME $tstfile`
+            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+            INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
+            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+                $CP -f $tstfile $BLDLIBDIR
+                if [ $? -ne 0 ]; then
+                    echo "Error: FAILED to copy $tstfile ."
+
+                    # Comment out this to CREATE expected file
+                    exit $EXIT_FAILURE
+                fi
+            fi
+        fi
+    done
 }
 
 CLEAN_LIBFILES_AND_BLDLIBDIR()
@@ -103,11 +130,14 @@ CLEAN_LIBFILES_AND_BLDLIBDIR()
     # skip rm if srcdir is same as destdir
     # this occurs when build/test performed in source dir and
     # make cp fail
-    SDIR=`$DIRNAME $HDFLIB_HOME/slf4j-api-1.7.25.jar`
+    SDIR=$HDFLIB_HOME
     INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
     INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
     if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $BLDLIBDIR
+        for tstfile in $COPY_JARTESTFILES
+        do
+            $RM $BLDLIBDIR/tstfile
+        done
     fi
 }
 
@@ -200,11 +230,6 @@ if $TEST -z "$LD_LIBRARY_PATH" ; then
 fi
 
 case  $os_name in
-    Darwin)
-    DYLD_LIBRARY_PATH=$BLDLIBDIR:$DYLD_LIBRARY_PATH
-    export DYLD_LIBRARY_PATH
-    LD_LIBRARY_PATH=$DYLD_LIBRARY_PATH
-    ;;
     *)
     LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
     ;;
-- 
cgit v0.12


From 510950623a180603a8af1c5d0fefd50a0ffd7b56 Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 17:26:33 -0500
Subject: Add testfiles to data copy

---
 java/examples/groups/JavaGroupExample.sh.in | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in
index 7bcd7c5..b4e21bd 100644
--- a/java/examples/groups/JavaGroupExample.sh.in
+++ b/java/examples/groups/JavaGroupExample.sh.in
@@ -60,6 +60,8 @@ $HDFLIB_HOME/slf4j-api-1.7.25.jar
 $HDFLIB_HOME/ext/slf4j-simple-1.7.25.jar
 "
 LIST_DATA_FILES="
+$HDFTEST_HOME/h5ex_g_iterate.h5
+$HDFTEST_HOME/h5ex_g_visit.h5
 $HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Create.txt
 $HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Iterate.txt
 $HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Compact.txt
@@ -178,6 +180,7 @@ CLEAN_DATAFILES_AND_BLDDIR()
         $RM $BLDDIR/examples.groups.H5Ex_G_*.txt
         $RM $BLDDIR/H5Ex_G_*.out
         $RM $BLDDIR/H5Ex_G_*.h5
+        $RM $BLDDIR/h5ex_g_*.h5
         SDIR=`$DIRNAME $tstfile`
         INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
         INODE_DDIR=`$LS -i -d $BLDDIR | $AWK -F' ' '{print $1}'`
-- 
cgit v0.12


From c9b37b93e92b29b92707eef4195e2465b5fbb7fe Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 21:22:32 -0500
Subject: change FILE path

---
 java/examples/groups/H5Ex_G_Iterate.java | 2 +-
 java/examples/groups/H5Ex_G_Visit.java   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/examples/groups/H5Ex_G_Iterate.java b/java/examples/groups/H5Ex_G_Iterate.java
index 3c9ca82..df1a1b8 100644
--- a/java/examples/groups/H5Ex_G_Iterate.java
+++ b/java/examples/groups/H5Ex_G_Iterate.java
@@ -25,7 +25,7 @@ import java.util.HashMap;
 import java.util.Map;
 
 public class H5Ex_G_Iterate {
-    private static String FILENAME = "groups/h5ex_g_iterate.h5";
+    private static String FILENAME = "./h5ex_g_iterate.h5";
     private static String DATASETNAME = "/";
 
     enum H5O_type {
diff --git a/java/examples/groups/H5Ex_G_Visit.java b/java/examples/groups/H5Ex_G_Visit.java
index f91c707..4719705 100644
--- a/java/examples/groups/H5Ex_G_Visit.java
+++ b/java/examples/groups/H5Ex_G_Visit.java
@@ -34,7 +34,7 @@ import java.util.ArrayList;
 
 public class H5Ex_G_Visit {
 
-    private static String FILE = "groups/h5ex_g_visit.h5";
+    private static String FILE = "./h5ex_g_visit.h5";
 
     public static void main(String[] args) {
         try {
-- 
cgit v0.12


From a02414cc24e01096a239fc774ce94c38655f53ce Mon Sep 17 00:00:00 2001
From: Allen Byrne <byrn@hdfgroup.org>
Date: Thu, 23 Aug 2018 21:27:32 -0500
Subject: Revert testfile FILE change

---
 java/examples/groups/H5Ex_G_Iterate.java | 2 +-
 java/examples/groups/H5Ex_G_Visit.java   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/examples/groups/H5Ex_G_Iterate.java b/java/examples/groups/H5Ex_G_Iterate.java
index df1a1b8..3c9ca82 100644
--- a/java/examples/groups/H5Ex_G_Iterate.java
+++ b/java/examples/groups/H5Ex_G_Iterate.java
@@ -25,7 +25,7 @@ import java.util.HashMap;
 import java.util.Map;
 
 public class H5Ex_G_Iterate {
-    private static String FILENAME = "./h5ex_g_iterate.h5";
+    private static String FILENAME = "groups/h5ex_g_iterate.h5";
     private static String DATASETNAME = "/";
 
     enum H5O_type {
diff --git a/java/examples/groups/H5Ex_G_Visit.java b/java/examples/groups/H5Ex_G_Visit.java
index 4719705..f91c707 100644
--- a/java/examples/groups/H5Ex_G_Visit.java
+++ b/java/examples/groups/H5Ex_G_Visit.java
@@ -34,7 +34,7 @@ import java.util.ArrayList;
 
 public class H5Ex_G_Visit {
 
-    private static String FILE = "./h5ex_g_visit.h5";
+    private static String FILE = "groups/h5ex_g_visit.h5";
 
     public static void main(String[] args) {
         try {
-- 
cgit v0.12