From ecce1682c5fb755b524e07f0fefa55159abf6375 Mon Sep 17 00:00:00 2001 From: Larry Knox Date: Fri, 25 Jun 2021 22:50:17 -0500 Subject: Release notes (#805) * Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler Co-authored-by: Larry Knox * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46d55f8c40b9333c57e9ae4f83c03572a27. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e113977a775a9311e7df015937f71b11f76f7b. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Restore initials to release notes. * Copy release notes from 1.10.7 RELEASE.txt ffor fixes also in 1.12.1. * emove 2 entries added in PR #777. * Add RELEASE.txt entry for h5repack bug fix (#792) * Hdf5 1 12 Fix tools test (#795) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Add 2 release notes. * Hdf5 1 12 Release Note (#785) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Hdf5 1 12 Update missing release note info. (#777) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler Co-authored-by: Gaute Hope Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: jhendersonHDF --- .github/CODEOWNERS | 4 +- c++/test/CMakeVFDTests.cmake | 2 +- release_docs/RELEASE.txt | 122 +++++++++++++++++++++++++++++--- test/CMakeVFDTests.cmake | 2 +- testpar/CMakeVFDTests.cmake | 2 +- tools/test/h5copy/CMakeLists.txt | 2 +- tools/test/h5diff/CMakeLists.txt | 2 +- tools/test/h5dump/CMakeLists.txt | 2 +- tools/test/h5dump/CMakeVFDTests.cmake | 2 +- tools/test/h5ls/CMakeLists.txt | 2 +- tools/test/h5repack/CMakeLists.txt | 4 +- tools/test/h5repack/CMakeVFDTests.cmake | 2 +- 12 files changed, 124 insertions(+), 24 deletions(-) diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index c807e75..29e5866 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -19,7 +19,7 @@ CMakeTests.* @byrnHDF @derobins /doc/ @gnuoyd @jrmainzer -/examples/ @lrknox @derobins @bljhdf +/examples/ @lrknox @derobins @bmribler /fortran/ @brtnfld @epourmal @@ -29,7 +29,7 @@ CMakeTests.* @byrnHDF @derobins /m4/ @lrknox @derobins -/release_docs/ @lrknox @bljhdf @byrnHDF +/release_docs/ @lrknox @bmribler @byrnHDF /src/ @jhendersonHDF @derobins @fortnern @qkoziol @soumagne @vchoi-hdfgroup @jrmainzer diff --git a/c++/test/CMakeVFDTests.cmake b/c++/test/CMakeVFDTests.cmake index 3b555ed..360d14e 100644 --- a/c++/test/CMakeVFDTests.cmake +++ b/c++/test/CMakeVFDTests.cmake @@ -26,7 +26,7 @@ set (VFD_LIST family ) -if (DIRECT_VFD) +if (H5_HAVE_DIRECT) set (VFD_LIST ${VFD_LIST} direct) endif () diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 0f71efc..e408343 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -131,7 +131,7 @@ New Features To do so, set CMAKE_OSX_ARCHITECTURES="x86_64;arm64" - (SAM - 2021/02/07, https://github.com/HDFGroup/hdf5/issues/311) + (SAM - 2021/02/07, github-311) - Added a configure-time option to control certain compiler warnings diagnostics @@ -226,7 +226,7 @@ New Features CMake target is 'doxygen' for all available doxygen targets CMake target is 'hdf5lib_doc' for the src subdirectory - (ADB - 2020/11/13) + (ADB - 2020/11/13, HDFFV-11243) - CMake option to use MSVC naming conventions with MinGW @@ -646,6 +646,15 @@ Bug Fixes since HDF5-1.12.0 release (BMR - 2021/05/12, HDFFV-11223) + - Fixed CVE-2019-9151 + + h5repack generated a segfault when an invalid memory read occurred on + a corrupted file. + + The issue is now fixed. h5repack produces an error instead of segfault. + + (BMR - 2021/05/04, HDFFV-10718) + - Fixed CVE-2018-11206 The tool h5dump produced a segfault when the size of a fill value @@ -854,6 +863,13 @@ Bug Fixes since HDF5-1.12.0 release (ADB - 2021/06/03) + - Move emscripten flag to compile flags + + The emscripten flag, -O0, was removed from target_link_libraries command + to the correct target_compile_options command. + + (ADB - 2021/04/26 HDFFV-11083) + - Remove arbitrary warning flag groups from CMake builds The arbitrary groups were created to reduce the quantity of warnings being @@ -890,6 +906,20 @@ Bug Fixes since HDF5-1.12.0 release (DER - 2021/01/07, HDFFV-11201) + - Add missing ENV variable line to hdfoptions.cmake file + + Using the build options to use system SZIP/ZLIB libraries need to also + specify the library root directory. Setting the {library}_ROOT ENV + variable was added to the hdfoptions.cmake file. + + (ADB - 2020/10/19 HDFFV-11108) + + - Fixed removal of Java lib files by "make uninstall" + + "make uninstall" was not removing 5 Java files from the lib directory. + + (LRK - 2020/08/24, HDFFV-10811) + - Stopped addition of szip header and include directory path for incompatible libsz @@ -901,6 +931,7 @@ Bug Fixes since HDF5-1.12.0 release (LRK - 2020/08/17, HDFFV-10830) + Tools ----- - Changed how h5dump and h5ls identify long double. @@ -912,7 +943,7 @@ Bug Fixes since HDF5-1.12.0 release also show the number of bits for precision. These files are also used in the java tests. - (ADB - 2021/03/24, HDFFV-11229) + (ADB - 2021/03/24, HDFFV-11229,HDFFV-11113) - Fixed tools argument parsing. @@ -923,6 +954,58 @@ Bug Fixes since HDF5-1.12.0 release (ADB - 2021/01/19, HDFFV-11106) + - Fixed a bug with h5repack ignoring the "-q" and "-z" command-line options + + h5repack uses the -q and -z command-line options to specify the indexing + options for objects in the file when repacking. Previously, h5repack + would simply ignore any setting from these options. This has been fixed + so that h5repack will correctly interpret the following settings: + + -q "name" : Sort objects by name order + -q "creation_order" : Sort objects by link creation order + -z "ascending" : Sort objects by ascending name/link creation order + -z "descending" : Sort objects by descending name/link creation order + + (JTH - 2020/04/16, HDFFV-11030) + + - The tools library was updated by standardizing the error stack process. + + General sequence is: + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); + h5tools_init(); + ... process the command-line (check for error-stack enable) ... + h5tools_error_report(); + ... (do work) ... + h5diff_exit(ret); + + (ADB - 2020/07/20, HDFFV-11066) + + - h5diff fixed a command line parsing error. + + h5diff would ignore the argument to -d (delta) if it is smaller than DBL_EPSILON. + The macro H5_DBL_ABS_EQUAL was removed and a direct value comparision was used. + + (ADB - 2020/07/20, HDFFV-10897) + + - h5diff added a command line option to ignore attributes. + + h5diff would ignore all objects with a supplied path if the exclude-path argument is used. + Adding the exclude-attribute argument will only exclude attributes, with the supplied path, + from comparison. + + (ADB - 2020/07/20, HDFFV-5935) + + - h5diff added another level to the verbose argument to print filenames. + + Added verbose level 3 that is level 2 plus the filenames. The levels are: + 0 : Identical to '-v' or '--verbose' + 1 : All level 0 information plus one-line attribute status summary + 2 : All level 1 information plus extended attribute status report + 3 : All level 2 information plus file names + + (ADB - 2020/07/20, HDFFV-1005) + Fortran API ----------- @@ -952,10 +1035,24 @@ Bug Fixes since HDF5-1.12.0 release (ADB - 2021/05/03) + - Fixed the dimension size description in the layout message table of the + file format specification section IV.A.2.i. + + The layout message table described the dimension sizes starting from + Dimension 0 to Dimension #n. This was incorrect because it would mean + the rank is n+1. + + The dimension size entries were changed to starting from Dimension 1 to + Dimension #n. + + (VC – 2020/06/09, HDFFV-11079) + F90 APIs -------- - - + - Fixed parallel make build failure due to a missing H5forkit dependency. + + (MSB, 2021/03/31, HDFFV-11232) C++ APIs @@ -1080,24 +1177,24 @@ The following platforms are not supported but have been tested for this release. Linux-3.10.0-1127.0.0.1chaos openmpi/4.0.0 #1 SMP x86_64 GNU/Linux clang/6.0.0, 11.0.1 - (quartz) gcc/7.3.0, 8.1.0 + (quartz) gcc/7.3.0, 8.3.0 intel/16.0.4, 18.0.2, 19.0.4 Linux-4.14.0-115.10.1.1 spectrum-mpi/rolling-release - #1 SMP ppc64le GNU/Linux clang/7.1.0, 10.0.1 + #1 SMP ppc64le GNU/Linux clang/7.1.0, ibm-11.0.1 (lassen) gcc/4.9.3, 8.3.1 - xl/2019.02.07,2021.03.11 + xl/2019.02.07, 2021.03.11 Linux-4.12.14-150.52-default cray-mpich/7.7.10 #1 SMP x86_64 GNU/Linux gcc/8.3.0 (cori) intel/19.0.3 - Linux-4.4.180-94.107-default cray-mpich/7.7.6 - # 1SMP x86_64 GNU/Linux gcc/7.2.0, 8.2.0 - (mutrino) intel/17.0.4, 18.0.2, 19.0.4 + Linux-4.4.180-94.107-default cray-mpich/7.7.16 + # 1SMP x86_64 GNU/Linux gcc/7.3.0, 8.3.0, 10.2.0 + (mutrino) intel/17.0.4, 18.0.5, 19.1.3 Linux-3.10.0- spectrum-mpi/rolling-release - 1127.10.1.1chaos.ch6.ppc64le clang/7.1,11.0.1 + 1127.10.1.1chaos.ch6.ppc64le clang/7.1.0, 11.0.1 #1 SMP ppc64le GNU/Linux gcc/4.9.3,8.3.1 (ray) xl/2019.08.20,2021.03.11 @@ -1156,6 +1253,9 @@ Known Problems CPP ptable test fails on both VS2017 and VS2019 with Intel compiler, JIRA issue: HDFFV-10628. This test will pass with VS2015 with Intel compiler. + The subsetting option in ph5diff currently will fail and should be avoided. + The subsetting option works correctly in serial h5diff. + Known problems in previous releases can be found in the HISTORY*.txt files in the HDF5 source. Please report any new problems found to help@hdfgroup.org. diff --git a/test/CMakeVFDTests.cmake b/test/CMakeVFDTests.cmake index dada9a9..892ccf3 100644 --- a/test/CMakeVFDTests.cmake +++ b/test/CMakeVFDTests.cmake @@ -26,7 +26,7 @@ set (VFD_LIST multi family ) -if (DIRECT_VFD) +if (H5_HAVE_DIRECT) set (VFD_LIST ${VFD_LIST} direct) endif () diff --git a/testpar/CMakeVFDTests.cmake b/testpar/CMakeVFDTests.cmake index 5fac4ea..f50ca16 100644 --- a/testpar/CMakeVFDTests.cmake +++ b/testpar/CMakeVFDTests.cmake @@ -30,7 +30,7 @@ set (H5P_VFD_TESTS t_pflush2 ) -if (DIRECT_VFD) +if (H5_HAVE_DIRECT) set (VFD_LIST ${VFD_LIST} direct) endif () diff --git a/tools/test/h5copy/CMakeLists.txt b/tools/test/h5copy/CMakeLists.txt index f76a65e..f63eb84 100644 --- a/tools/test/h5copy/CMakeLists.txt +++ b/tools/test/h5copy/CMakeLists.txt @@ -32,7 +32,7 @@ if (BUILD_SHARED_LIBS) add_library (${H5COPY_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_copy.c) target_include_directories (${H5COPY_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5COPY_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5COPY_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5COPY_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5COPY_TOOL_PLUGIN_LIB_TARGET} ${H5COPY_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") #----------------------------------------------------------------------------- diff --git a/tools/test/h5diff/CMakeLists.txt b/tools/test/h5diff/CMakeLists.txt index 9349ace..f74db0f 100644 --- a/tools/test/h5diff/CMakeLists.txt +++ b/tools/test/h5diff/CMakeLists.txt @@ -32,7 +32,7 @@ if (BUILD_SHARED_LIBS) add_library (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_diff.c) target_include_directories (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5DIFF_TOOL_PLUGIN_LIB_TARGET} ${H5DIFF_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") #----------------------------------------------------------------------------- diff --git a/tools/test/h5dump/CMakeLists.txt b/tools/test/h5dump/CMakeLists.txt index 242465e..a7b4846 100644 --- a/tools/test/h5dump/CMakeLists.txt +++ b/tools/test/h5dump/CMakeLists.txt @@ -12,7 +12,7 @@ if (BUILD_SHARED_LIBS) add_library (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_dump.c) target_include_directories (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5DUMP_TOOL_PLUGIN_LIB_TARGET} ${H5DUMP_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") #----------------------------------------------------------------------------- diff --git a/tools/test/h5dump/CMakeVFDTests.cmake b/tools/test/h5dump/CMakeVFDTests.cmake index 014790f..01834b3 100644 --- a/tools/test/h5dump/CMakeVFDTests.cmake +++ b/tools/test/h5dump/CMakeVFDTests.cmake @@ -26,7 +26,7 @@ set (VFD_H5DUMP_LIST family ) -if (DIRECT_VFD) +if (H5_HAVE_DIRECT) set (VFD_H5DUMP_LIST ${VFD_H5DUMP_LIST} direct) endif () diff --git a/tools/test/h5ls/CMakeLists.txt b/tools/test/h5ls/CMakeLists.txt index ee223b8..ba6e468 100644 --- a/tools/test/h5ls/CMakeLists.txt +++ b/tools/test/h5ls/CMakeLists.txt @@ -12,7 +12,7 @@ if (BUILD_SHARED_LIBS) add_library (${H5LS_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_ls.c) target_include_directories (${H5LS_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5LS_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5LS_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5LS_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5LS_TOOL_PLUGIN_LIB_TARGET} ${H5LS_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") #----------------------------------------------------------------------------- diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index 26db85a..0b90750 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -54,13 +54,13 @@ if (BUILD_SHARED_LIBS) add_library (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} ${H5REPACK_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") add_library (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c) target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED) - target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} ${H5REPACK_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB") #----------------------------------------------------------------------------- diff --git a/tools/test/h5repack/CMakeVFDTests.cmake b/tools/test/h5repack/CMakeVFDTests.cmake index 74471f8..e26941b 100644 --- a/tools/test/h5repack/CMakeVFDTests.cmake +++ b/tools/test/h5repack/CMakeVFDTests.cmake @@ -26,7 +26,7 @@ set (VFD_LIST family ) -if (DIRECT_VFD) +if (H5_HAVE_DIRECT) set (VFD_LIST ${VFD_LIST} direct) endif () -- cgit v0.12