From d6b44d14dccf80d397e2f69aa2d917e0e464fc35 Mon Sep 17 00:00:00 2001 From: Albert Cheng Date: Thu, 18 Dec 2014 19:52:34 -0500 Subject: [svn-r25901] HDFFV-9046: reorganize hdf5/perform/ directory Moved perform/ to tools/perform. Updated all the configure related files for the new location. Tested: h5committested plus tested in jam and kite. --- CMakeLists.txt | 5 +- MANIFEST | 60 +- Makefile.am | 20 +- Makefile.in | 40 +- configure | 6 +- configure.ac | 2 +- perform/CMakeLists.txt | 140 -- perform/CMakeTests.cmake | 61 - perform/COPYING | 16 - perform/Makefile.am | 79 - perform/Makefile.in | 1544 ---------------- perform/benchpar.c | 488 ----- perform/build_h5perf_alone.sh | 28 - perform/build_h5perf_serial_alone.sh | 28 - perform/chunk.c | 552 ------ perform/gen_report.pl | 527 ------ perform/iopipe.c | 503 ------ perform/overhead.c | 416 ----- perform/perf.c | 482 ----- perform/perf_meta.c | 850 --------- perform/pio_engine.c | 2678 ---------------------------- perform/pio_perf.c | 1696 ------------------ perform/pio_perf.h | 105 -- perform/pio_standalone.c | 282 --- perform/pio_standalone.h | 157 -- perform/pio_timer.c | 258 --- perform/pio_timer.h | 82 - perform/sio_engine.c | 1310 -------------- perform/sio_perf.c | 1409 --------------- perform/sio_perf.h | 104 -- perform/sio_standalone.c | 285 --- perform/sio_standalone.h | 528 ------ perform/sio_timer.c | 197 -- perform/sio_timer.h | 78 - perform/zip_perf.c | 653 ------- tools/CMakeLists.txt | 3 + tools/Makefile.am | 3 +- tools/Makefile.in | 4 +- tools/perform/CMakeLists.txt | 140 ++ tools/perform/CMakeTests.cmake | 61 + tools/perform/COPYING | 16 + tools/perform/Makefile.am | 79 + tools/perform/Makefile.in | 1544 ++++++++++++++++ tools/perform/benchpar.c | 488 +++++ tools/perform/build_h5perf_alone.sh | 28 + tools/perform/build_h5perf_serial_alone.sh | 28 + tools/perform/chunk.c | 552 ++++++ tools/perform/gen_report.pl | 527 ++++++ tools/perform/iopipe.c | 503 ++++++ tools/perform/overhead.c | 416 +++++ tools/perform/perf.c | 482 +++++ tools/perform/perf_meta.c | 850 +++++++++ tools/perform/pio_engine.c | 2678 ++++++++++++++++++++++++++++ tools/perform/pio_perf.c | 1696 ++++++++++++++++++ tools/perform/pio_perf.h | 105 ++ tools/perform/pio_standalone.c | 282 +++ tools/perform/pio_standalone.h | 157 ++ tools/perform/pio_timer.c | 258 +++ tools/perform/pio_timer.h | 82 + tools/perform/sio_engine.c | 1310 ++++++++++++++ tools/perform/sio_perf.c | 1409 +++++++++++++++ tools/perform/sio_perf.h | 104 ++ tools/perform/sio_standalone.c | 285 +++ tools/perform/sio_standalone.h | 528 ++++++ tools/perform/sio_timer.c | 197 ++ tools/perform/sio_timer.h | 78 + tools/perform/zip_perf.c | 653 +++++++ 67 files changed, 15601 insertions(+), 15614 deletions(-) delete mode 100644 perform/CMakeLists.txt delete mode 100644 perform/CMakeTests.cmake delete mode 100644 perform/COPYING delete mode 100644 perform/Makefile.am delete mode 100644 perform/Makefile.in delete mode 100644 perform/benchpar.c delete mode 100755 perform/build_h5perf_alone.sh delete mode 100755 perform/build_h5perf_serial_alone.sh delete mode 100644 perform/chunk.c delete mode 100755 perform/gen_report.pl delete mode 100644 perform/iopipe.c delete mode 100644 perform/overhead.c delete mode 100644 perform/perf.c delete mode 100644 perform/perf_meta.c delete mode 100644 perform/pio_engine.c delete mode 100644 perform/pio_perf.c delete mode 100644 perform/pio_perf.h delete mode 100644 perform/pio_standalone.c delete mode 100644 perform/pio_standalone.h delete mode 100644 perform/pio_timer.c delete mode 100644 perform/pio_timer.h delete mode 100644 perform/sio_engine.c delete mode 100644 perform/sio_perf.c delete mode 100644 perform/sio_perf.h delete mode 100644 perform/sio_standalone.c delete mode 100644 perform/sio_standalone.h delete mode 100644 perform/sio_timer.c delete mode 100644 perform/sio_timer.h delete mode 100644 perform/zip_perf.c create mode 100644 tools/perform/CMakeLists.txt create mode 100644 tools/perform/CMakeTests.cmake create mode 100644 tools/perform/COPYING create mode 100644 tools/perform/Makefile.am create mode 100644 tools/perform/Makefile.in create mode 100644 tools/perform/benchpar.c create mode 100755 tools/perform/build_h5perf_alone.sh create mode 100755 tools/perform/build_h5perf_serial_alone.sh create mode 100644 tools/perform/chunk.c create mode 100755 tools/perform/gen_report.pl create mode 100644 tools/perform/iopipe.c create mode 100644 tools/perform/overhead.c create mode 100644 tools/perform/perf.c create mode 100644 tools/perform/perf_meta.c create mode 100644 tools/perform/pio_engine.c create mode 100644 tools/perform/pio_perf.c create mode 100644 tools/perform/pio_perf.h create mode 100644 tools/perform/pio_standalone.c create mode 100644 tools/perform/pio_standalone.h create mode 100644 tools/perform/pio_timer.c create mode 100644 tools/perform/pio_timer.h create mode 100644 tools/perform/sio_engine.c create mode 100644 tools/perform/sio_perf.c create mode 100644 tools/perform/sio_perf.h create mode 100644 tools/perform/sio_standalone.c create mode 100644 tools/perform/sio_standalone.h create mode 100644 tools/perform/sio_timer.c create mode 100644 tools/perform/sio_timer.h create mode 100644 tools/perform/zip_perf.c diff --git a/CMakeLists.txt b/CMakeLists.txt index 09d886b..ebc73fc 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -145,7 +145,7 @@ set (HDF5_CPP_TST_DIR ${HDF5_SOURCE_DIR}/c++/test) set (HDF5_HL_SRC_DIR ${HDF5_SOURCE_DIR}/hl) set (HDF5_HL_CPP_SRC_DIR ${HDF5_SOURCE_DIR}/hl/c++) set (HDF5_TOOLS_SRC_DIR ${HDF5_SOURCE_DIR}/tools) -set (HDF5_PERFORM_SRC_DIR ${HDF5_SOURCE_DIR}/perform) +set (HDF5_PERFORM_SRC_DIR ${HDF5_SOURCE_DIR}/tools/perform) set (HDF5_F90_SRC_DIR ${HDF5_SOURCE_DIR}/fortran) if (NOT HDF5_INSTALL_BIN_DIR) @@ -760,9 +760,6 @@ if (BUILD_TESTING) add_subdirectory (${HDF5_SOURCE_DIR}/tools/lib ${PROJECT_BINARY_DIR}/tools/lib) add_subdirectory (${HDF5_SOURCE_DIR}/test ${PROJECT_BINARY_DIR}/test) endif (EXISTS "${HDF5_SOURCE_DIR}/test" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/test") - if (EXISTS "${HDF5_SOURCE_DIR}/perform" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/perform") - add_subdirectory (${HDF5_SOURCE_DIR}/perform ${PROJECT_BINARY_DIR}/perform) - endif (EXISTS "${HDF5_SOURCE_DIR}/perform" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/perform") if (H5_HAVE_PARALLEL) if (EXISTS "${HDF5_SOURCE_DIR}/testpar" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/testpar") add_subdirectory (${HDF5_SOURCE_DIR}/testpar ${PROJECT_BINARY_DIR}/testpar) diff --git a/MANIFEST b/MANIFEST index b22cd9c..60e550d 100644 --- a/MANIFEST +++ b/MANIFEST @@ -446,34 +446,6 @@ # #------------------------------------------------------------------------------ -./perform/COPYING -./perform/Makefile.am -./perform/Makefile.in -./perform/benchpar.c -./perform/build_h5perf_alone.sh -./perform/build_h5perf_serial_alone.sh -./perform/chunk.c -./perform/gen_report.pl -./perform/iopipe.c -./perform/overhead.c -./perform/perf.c -./perform/perf_meta.c -./perform/pio_engine.c -./perform/pio_perf.c -./perform/pio_perf.h -./perform/pio_standalone.c -./perform/pio_standalone.h -./perform/pio_timer.c -./perform/pio_timer.h -./perform/sio_engine.c -./perform/sio_perf.c -./perform/sio_perf.h -./perform/sio_standalone.c -./perform/sio_standalone.h -./perform/sio_timer.c -./perform/sio_timer.h -./perform/zip_perf.c - ./release_docs/COPYING ./release_docs/HISTORY-1_0-1_8_0_rc3.txt ./release_docs/HISTORY-1_8.txt @@ -2086,6 +2058,34 @@ ./tools/testfiles/h5mkgrp_single_p.ls ./tools/testfiles/h5mkgrp_single_l.ls +./tools/perform/COPYING +./tools/perform/Makefile.am +./tools/perform/Makefile.in +./tools/perform/benchpar.c +./tools/perform/build_h5perf_alone.sh +./tools/perform/build_h5perf_serial_alone.sh +./tools/perform/chunk.c +./tools/perform/gen_report.pl +./tools/perform/iopipe.c +./tools/perform/overhead.c +./tools/perform/perf.c +./tools/perform/perf_meta.c +./tools/perform/pio_engine.c +./tools/perform/pio_perf.c +./tools/perform/pio_perf.h +./tools/perform/pio_standalone.c +./tools/perform/pio_standalone.h +./tools/perform/pio_timer.c +./tools/perform/pio_timer.h +./tools/perform/sio_engine.c +./tools/perform/sio_perf.c +./tools/perform/sio_perf.h +./tools/perform/sio_standalone.c +./tools/perform/sio_standalone.h +./tools/perform/sio_timer.c +./tools/perform/sio_timer.h +./tools/perform/zip_perf.c + # high level libraries ./hl/COPYING @@ -2382,8 +2382,6 @@ ./hl/test/CMakeTests.cmake ./hl/tools/CMakeLists.txt ./hl/tools/CMakeTests.cmake -./perform/CMakeLists.txt -./perform/CMakeTests.cmake ./src/CMakeLists.txt ./test/CMakeLists.txt ./test/CMakeTests.cmake @@ -2411,3 +2409,5 @@ ./tools/lib/CMakeLists.txt ./tools/misc/CMakeLists.txt ./tools/misc/CMakeTests.cmake +./tools/perform/CMakeLists.txt +./tools/perform/CMakeTests.cmake diff --git a/Makefile.am b/Makefile.am index 640fdcb..0fbf2ea 100644 --- a/Makefile.am +++ b/Makefile.am @@ -73,8 +73,8 @@ else endif SUBDIRS = src test $(TESTPARALLEL_DIR) tools . $(CXX_DIR) $(FORTRAN_DIR) \ - $(HDF5_HL_DIR) perform -DIST_SUBDIRS = src test testpar tools . c++ fortran hl perform examples + $(HDF5_HL_DIR) +DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples # Some files generated during configure that should be cleaned DISTCLEANFILES=config/stamp1 config/stamp2 @@ -93,25 +93,17 @@ lib progs check-p check-s: fi; \ done -# Make all, tests, and (un)install also recurse into perform directory -all-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) all - +# Make all, tests, and (un)install tests: - @@SETX@; for d in $(SUBDIRS) perform; do \ + @@SETX@; for d in $(SUBDIRS); do \ if test $$d != .; then \ (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ fi; \ done -install-exec-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) install -uninstall-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) uninstall - # Check-clean also recurses into examples directory check-clean: - @@SETX@; for d in $(SUBDIRS) examples perform; do \ + @@SETX@; for d in $(SUBDIRS) examples; do \ if test $$d != .; then \ (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ fi; \ @@ -201,4 +193,4 @@ check-vfd: $(top_builddir)/config.status: # Don't include conclude.am in root Makefile; tests target needs to -# recurse into perform directory as well as reguar subdirs. +# recurse into reguar subdirs. diff --git a/Makefile.in b/Makefile.in index a8e0b61..bed7078 100644 --- a/Makefile.in +++ b/Makefile.in @@ -525,9 +525,9 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *-tmp @BUILD_HDF5_HL_CONDITIONAL_FALSE@HDF5_HL_DIR = @BUILD_HDF5_HL_CONDITIONAL_TRUE@HDF5_HL_DIR = hl SUBDIRS = src test $(TESTPARALLEL_DIR) tools . $(CXX_DIR) $(FORTRAN_DIR) \ - $(HDF5_HL_DIR) perform + $(HDF5_HL_DIR) -DIST_SUBDIRS = src test testpar tools . c++ fortran hl perform examples +DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples # Some files generated during configure that should be cleaned DISTCLEANFILES = config/stamp1 config/stamp2 @@ -872,7 +872,7 @@ distcleancheck: distclean exit 1; } >&2 check-am: all-am check: check-recursive -all-am: Makefile all-local +all-am: Makefile installdirs: installdirs-recursive installdirs-am: install-exec: install-exec-recursive @@ -932,7 +932,7 @@ install-dvi: install-dvi-recursive install-dvi-am: -install-exec-am: install-exec-local +install-exec-am: install-html: install-html-recursive @@ -973,11 +973,11 @@ ps: ps-recursive ps-am: -uninstall-am: uninstall-local +uninstall-am: .MAKE: $(am__recursive_targets) install-am install-strip -.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am all-local \ +.PHONY: $(am__recursive_targets) CTAGS GTAGS TAGS all all-am \ am--refresh check check-am clean clean-cscope clean-generic \ clean-libtool cscope cscopelist-am ctags ctags-am dist \ dist-all dist-bzip2 dist-gzip dist-lzip dist-shar dist-tarZ \ @@ -985,14 +985,14 @@ uninstall-am: uninstall-local distclean-libtool distclean-tags distcleancheck distdir \ distuninstallcheck dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-dvi \ - install-dvi-am install-exec install-exec-am install-exec-local \ - install-html install-html-am install-info install-info-am \ - install-man install-pdf install-pdf-am install-ps \ - install-ps-am install-strip installcheck installcheck-am \ - installcheck-local installdirs installdirs-am maintainer-clean \ + install-dvi-am install-exec install-exec-am install-html \ + install-html-am install-info install-info-am install-man \ + install-pdf install-pdf-am install-ps install-ps-am \ + install-strip installcheck installcheck-am installcheck-local \ + installdirs installdirs-am maintainer-clean \ maintainer-clean-generic mostlyclean mostlyclean-generic \ mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am tags \ - tags-am uninstall uninstall-am uninstall-local + tags-am uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -1017,25 +1017,17 @@ lib progs check-p check-s: fi; \ done -# Make all, tests, and (un)install also recurse into perform directory -all-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) all - +# Make all, tests, and (un)install tests: - @@SETX@; for d in $(SUBDIRS) perform; do \ + @@SETX@; for d in $(SUBDIRS); do \ if test $$d != .; then \ (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ fi; \ done -install-exec-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) install -uninstall-local: - @cd perform && $(MAKE) $(AM_MAKEFLAGS) uninstall - # Check-clean also recurses into examples directory check-clean: - @@SETX@; for d in $(SUBDIRS) examples perform; do \ + @@SETX@; for d in $(SUBDIRS) examples; do \ if test $$d != .; then \ (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ fi; \ @@ -1125,7 +1117,7 @@ check-vfd: $(top_builddir)/config.status: # Don't include conclude.am in root Makefile; tests target needs to -# recurse into perform directory as well as reguar subdirs. +# recurse into reguar subdirs. # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. diff --git a/configure b/configure index 47357cf..671c8ef 100755 --- a/configure +++ b/configure @@ -1,5 +1,5 @@ #! /bin/sh -# From configure.ac Id: configure.ac 25866 2014-12-08 00:18:54Z hdftest . +# From configure.ac Id: configure.ac 25887 2014-12-15 00:08:51Z hdftest . # Guess values for system-dependent variables and create Makefiles. # Generated by GNU Autoconf 2.69 for HDF5 1.8.15-snap3. # @@ -33292,7 +33292,7 @@ else fi -ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testcheck_version.sh test/testerror.sh test/H5srcdir_str.h test/testlibinfo.sh test/testlinks_env.sh test/test_plugin.sh testpar/Makefile perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumppbits.sh tools/h5dump/testh5dumpxml.sh tools/h5ls/testh5ls.sh tools/h5import/Makefile tools/h5import/h5importtestutil.sh tools/h5diff/Makefile tools/h5diff/testh5diff.sh tools/h5diff/testph5diff.sh tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5repack/h5repack_plugin.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/h5copy/testh5copy.sh tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5mkgrp.sh tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/run-c-ex.sh examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/test/H5srcdir_str.h c++/examples/Makefile c++/examples/run-c++-ex.sh c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/run-fortran-ex.sh fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/test/H5srcdir_str.h hl/tools/Makefile hl/tools/gif2h5/Makefile hl/tools/gif2h5/h52giftest.sh hl/examples/Makefile hl/examples/run-hlc-ex.sh hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/c++/examples/run-hlc++-ex.sh hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile hl/fortran/examples/run-hlfortran-ex.sh" +ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testcheck_version.sh test/testerror.sh test/H5srcdir_str.h test/testlibinfo.sh test/testlinks_env.sh test/test_plugin.sh testpar/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumppbits.sh tools/h5dump/testh5dumpxml.sh tools/h5ls/testh5ls.sh tools/h5import/Makefile tools/h5import/h5importtestutil.sh tools/h5diff/Makefile tools/h5diff/testh5diff.sh tools/h5diff/testph5diff.sh tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5repack/h5repack_plugin.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/h5copy/testh5copy.sh tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5mkgrp.sh tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile tools/perform/Makefile examples/Makefile examples/run-c-ex.sh examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/test/H5srcdir_str.h c++/examples/Makefile c++/examples/run-c++-ex.sh c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/run-fortran-ex.sh fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/test/H5srcdir_str.h hl/tools/Makefile hl/tools/gif2h5/Makefile hl/tools/gif2h5/h52giftest.sh hl/examples/Makefile hl/examples/run-hlc-ex.sh hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/c++/examples/run-hlc++-ex.sh hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile hl/fortran/examples/run-hlfortran-ex.sh" cat >confcache <<\_ACEOF @@ -34572,7 +34572,6 @@ do "test/testlinks_env.sh") CONFIG_FILES="$CONFIG_FILES test/testlinks_env.sh" ;; "test/test_plugin.sh") CONFIG_FILES="$CONFIG_FILES test/test_plugin.sh" ;; "testpar/Makefile") CONFIG_FILES="$CONFIG_FILES testpar/Makefile" ;; - "perform/Makefile") CONFIG_FILES="$CONFIG_FILES perform/Makefile" ;; "tools/Makefile") CONFIG_FILES="$CONFIG_FILES tools/Makefile" ;; "tools/h5dump/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5dump/Makefile" ;; "tools/h5dump/testh5dump.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dump.sh" ;; @@ -34599,6 +34598,7 @@ do "tools/misc/testh5repart.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5repart.sh" ;; "tools/h5stat/testh5stat.sh") CONFIG_FILES="$CONFIG_FILES tools/h5stat/testh5stat.sh" ;; "tools/h5stat/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5stat/Makefile" ;; + "tools/perform/Makefile") CONFIG_FILES="$CONFIG_FILES tools/perform/Makefile" ;; "examples/Makefile") CONFIG_FILES="$CONFIG_FILES examples/Makefile" ;; "examples/run-c-ex.sh") CONFIG_FILES="$CONFIG_FILES examples/run-c-ex.sh" ;; "examples/testh5cc.sh") CONFIG_FILES="$CONFIG_FILES examples/testh5cc.sh" ;; diff --git a/configure.ac b/configure.ac index d5f268b..e710e50 100644 --- a/configure.ac +++ b/configure.ac @@ -4502,7 +4502,6 @@ AC_CONFIG_FILES([src/libhdf5.settings test/testlinks_env.sh test/test_plugin.sh testpar/Makefile - perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh @@ -4529,6 +4528,7 @@ AC_CONFIG_FILES([src/libhdf5.settings tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile + tools/perform/Makefile examples/Makefile examples/run-c-ex.sh examples/testh5cc.sh diff --git a/perform/CMakeLists.txt b/perform/CMakeLists.txt deleted file mode 100644 index 6887c60..0000000 --- a/perform/CMakeLists.txt +++ /dev/null @@ -1,140 +0,0 @@ -cmake_minimum_required (VERSION 2.8.11) -PROJECT (HDF5_PERFORM ) - -#----------------------------------------------------------------------------- -# Apply Definitions to compiler in this directory and below -#----------------------------------------------------------------------------- -add_definitions (${HDF_EXTRA_C_FLAGS}) - -#----------------------------------------------------------------------------- -# Setup include Directories -#----------------------------------------------------------------------------- -INCLUDE_DIRECTORIES (${HDF5_TEST_SRC_DIR}) -INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib ) - -# -------------------------------------------------------------------- -# Add the executables -# -------------------------------------------------------------------- -#-- Adding test for h5perf_serial -set (h5perf_serial_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/sio_timer.c - ${HDF5_PERFORM_SOURCE_DIR}/sio_perf.c - ${HDF5_PERFORM_SOURCE_DIR}/sio_engine.c -) -add_executable (h5perf_serial ${h5perf_serial_SRCS}) -TARGET_NAMING (h5perf_serial ${LIB_TYPE}) -TARGET_C_PROPERTIES (h5perf_serial " " " ") -target_link_libraries (h5perf_serial ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) -set_target_properties (h5perf_serial PROPERTIES FOLDER perform) - -if (HDF5_BUILD_PERFORM_STANDALONE) - #-- Adding test for h5perf_serial_alone - set (h5perf_serial_alone_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/sio_timer.c - ${HDF5_PERFORM_SOURCE_DIR}/sio_perf.c - ${HDF5_PERFORM_SOURCE_DIR}/sio_engine.c - ) - add_executable (h5perf_serial_alone ${h5perf_serial_alone_SRCS}) - set_property (TARGET h5perf_serial_alone - APPEND PROPERTY COMPILE_DEFINITIONS STANDALONE - ) - TARGET_NAMING (h5perf_serial_alone ${LIB_TYPE}) - TARGET_C_PROPERTIES (h5perf_serial_alone " " " ") - target_link_libraries (h5perf_serial_alone ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) - set_target_properties (h5perf_serial_alone PROPERTIES FOLDER perform) -endif (HDF5_BUILD_PERFORM_STANDALONE) - -#-- Adding test for chunk -set (chunk_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/chunk.c -) -ADD_EXECUTABLE(chunk ${chunk_SRCS}) -TARGET_NAMING (chunk ${LIB_TYPE}) -TARGET_C_PROPERTIES (chunk " " " ") -TARGET_LINK_LIBRARIES(chunk ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) -set_target_properties (chunk PROPERTIES FOLDER perform) - -#-- Adding test for iopipe -set (iopipe_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/iopipe.c -) -add_executable (iopipe ${iopipe_SRCS}) -TARGET_NAMING (iopipe ${LIB_TYPE}) -TARGET_C_PROPERTIES (iopipe " " " ") -target_link_libraries (iopipe ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) -set_target_properties (iopipe PROPERTIES FOLDER perform) - -#-- Adding test for overhead -set (overhead_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/overhead.c -) -add_executable (overhead ${overhead_SRCS}) -TARGET_NAMING (overhead ${LIB_TYPE}) -TARGET_C_PROPERTIES (overhead " " " ") -target_link_libraries (overhead ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) -set_target_properties (overhead PROPERTIES FOLDER perform) - -#-- Adding test for perf_meta -set (perf_meta_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/perf_meta.c -) -add_executable (perf_meta ${perf_meta_SRCS}) -TARGET_NAMING (perf_meta ${LIB_TYPE}) -TARGET_C_PROPERTIES (perf_meta " " " ") -target_link_libraries (perf_meta ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) -set_target_properties (perf_meta PROPERTIES FOLDER perform) - -#-- Adding test for zip_perf -set (zip_perf_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/zip_perf.c -) -add_executable (zip_perf ${zip_perf_SRCS}) -TARGET_NAMING (zip_perf ${LIB_TYPE}) -TARGET_C_PROPERTIES (zip_perf " " " ") -target_link_libraries (zip_perf ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) -set_target_properties (zip_perf PROPERTIES FOLDER perform) - -if (H5_HAVE_PARALLEL) - #-- Adding test for h5perf - set (h5perf_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/pio_timer.c - ${HDF5_PERFORM_SOURCE_DIR}/pio_perf.c - ${HDF5_PERFORM_SOURCE_DIR}/pio_engine.c - ) - add_executable (h5perf ${h5perf_SRCS}) - TARGET_NAMING (h5perf ${LIB_TYPE}) - TARGET_C_PROPERTIES (h5perf " " " ") - target_link_libraries (h5perf ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - set_target_properties (h5perf PROPERTIES FOLDER perform) - - if (HDF5_BUILD_PERFORM_STANDALONE) - #-- Adding test for h5perf - set (h5perf_alone_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/pio_timer.c - ${HDF5_PERFORM_SOURCE_DIR}/pio_perf.c - ${HDF5_PERFORM_SOURCE_DIR}/pio_engine.c - ) - add_executable (h5perf_alone ${h5perf_alone_SRCS}) - set_property (TARGET h5perf_alone - APPEND PROPERTY COMPILE_DEFINITIONS STANDALONE - ) - TARGET_NAMING (h5perf_alone ${LIB_TYPE}) - TARGET_C_PROPERTIES (h5perf_alone " " " ") - target_link_libraries (h5perf_alone ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - set_target_properties (h5perf_alone PROPERTIES FOLDER perform) - endif (HDF5_BUILD_PERFORM_STANDALONE) - - if (HDF5_BUILD_PARALLEL_ALL) - #-- Adding test for benchpar - set (benchpar_SRCS - ${HDF5_PERFORM_SOURCE_DIR}/benchpar.c - ) - add_executable (benchpar ${benchpar_SRCS}) - TARGET_NAMING (benchpar ${LIB_TYPE}) - TARGET_C_PROPERTIES (benchpar " " " ") - target_link_libraries (benchpar ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - set_target_properties (benchpar PROPERTIES FOLDER perform) - endif (HDF5_BUILD_PARALLEL_ALL) -endif (H5_HAVE_PARALLEL) - -include (CMakeTests.cmake) diff --git a/perform/CMakeTests.cmake b/perform/CMakeTests.cmake deleted file mode 100644 index f8a5846..0000000 --- a/perform/CMakeTests.cmake +++ /dev/null @@ -1,61 +0,0 @@ - -############################################################################## -############################################################################## -### T E S T I N G ### -############################################################################## -############################################################################## - -add_custom_command ( - TARGET zip_perf - POST_BUILD - COMMAND ${CMAKE_COMMAND} - ARGS -E copy_if_different ${HDF5_TOOLS_SRC_DIR}/testfiles/tfilters.h5 ${PROJECT_BINARY_DIR}/tfilters.h5 -) - -#----------------------------------------------------------------------------- -# Add Tests -#----------------------------------------------------------------------------- - -# Remove any output file left over from previous test run -add_test ( - NAME PERFORM_h5perform-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - chunk.h5 - iopipe.h5 - iopipe.raw - x-diag-rd.dat - x-diag-wr.dat - x-rowmaj-rd.dat - x-rowmaj-wr.dat - x-gnuplot -) - -add_test (NAME PERFORM_h5perf_serial COMMAND $) - -if (HDF5_BUILD_PERFORM_STANDALONE) - add_test (NAME PERFORM_h5perf_serial_alone COMMAND $) -endif (HDF5_BUILD_PERFORM_STANDALONE) - -add_test (NAME PERFORM_chunk COMMAND $) - -add_test (NAME PERFORM_iopipe COMMAND $) - -add_test (NAME PERFORM_overhead COMMAND $) - -add_test (NAME PERFORM_perf_meta COMMAND $) - -add_test (NAME PERFORM_zip_perf_help COMMAND $ "-h") -add_test (NAME PERFORM_zip_perf COMMAND $ tfilters.h5) - -if (H5_HAVE_PARALLEL) - add_test (NAME PERFORM_h5perf COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS} $) - - if (HDF5_BUILD_PERFORM_STANDALONE) - add_test (NAME PERFORM_h5perf_alone COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS} $) - endif (HDF5_BUILD_PERFORM_STANDALONE) - - if (HDF5_BUILD_PARALLEL_ALL) - add_test (NAME PERFORM_benchpar COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS} $) - endif (HDF5_BUILD_PARALLEL_ALL) -endif (H5_HAVE_PARALLEL) diff --git a/perform/COPYING b/perform/COPYING deleted file mode 100644 index 6903daf..0000000 --- a/perform/COPYING +++ /dev/null @@ -1,16 +0,0 @@ - - Copyright by The HDF Group and - The Board of Trustees of the University of Illinois. - All rights reserved. - - The files and subdirectories in this directory are part of HDF5. - The full HDF5 copyright notice, including terms governing use, - modification, and redistribution, is contained in the files COPYING - and Copyright.html. COPYING can be found at the root of the source - code distribution tree; Copyright.html can be found at the root - level of an installed copy of the electronic HDF5 document set and - is linked from the top-level documents page. It can also be found - at http://www.hdfgroup.org/HDF5/doc/Copyright.html. If you do not - have access to either file, you may request a copy from - help@hdfgroup.org. - diff --git a/perform/Makefile.am b/perform/Makefile.am deleted file mode 100644 index 59c598a..0000000 --- a/perform/Makefile.am +++ /dev/null @@ -1,79 +0,0 @@ -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. The full HDF5 copyright notice, including -# terms governing use, modification, and redistribution, is contained in -# the files COPYING and Copyright.html. 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The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#ifdef H5_HAVE_UNISTD_H -#include -#endif -#include -#include -#include -#include -#include - -#include "hdf5.h" - -/* Local macros */ -#ifdef H5_HAVE_VISUAL_STUDIO -#define HDgetlogin() Wgetlogin() -#else /* H5_HAVE_VISUAL_STUDIO */ -#define HDgetlogin() getlogin() -#endif /* H5_HAVE_VISUAL_STUDIO */ - -/* - * HDF Boolean type. - */ -#ifndef FALSE -# define FALSE 0 -#endif -#ifndef TRUE -# define TRUE 1 -#endif - -/* defines for type of VFL driver to use */ -#define FACC_DEFAULT 0 -#define FACC_MPIO 1 - -/* Defines for computing performance information */ -#define ONE_KB 1024 -#define ONE_MB (ONE_KB * ONE_KB) -#define ONE_GB (ONE_MB * ONE_KB) - -/* report 0.0 in case t is zero too */ -#define MB_PER_SEC(bytes,t) ((fabs(t)<0.0000000001) ? 0.0 : ((((double)bytes) / ONE_MB) / (t))) - -/* Control default behavior (with no command line arguments) */ -#define DEFAULT_RANK 3 -#define DEFAULT_DIM 1024 -#define DEFAULT_PREFIX "/tmp" -#define DEFAULT_USERNAME "koziol" -#define DEFAULT_FILENAME "benchpar.h5" -#define DEFAULT_SLICE 0 -#define DEFAULT_C_TYPE int -#define DEFAULT_HDF5_DATATYPE H5T_NATIVE_INT /* Keep this in sync with the DEFAULT_C_TYPE */ -#define DEFAULT_DATASET_NAME "Dataset" -#define DEFAULT_VFL_DRIVER FACC_MPIO -#define DEFAULT_PAR_MODE H5FD_MPIO_COLLECTIVE -#define DEFAULT_CHUNK_STORAGE 0 -#define DEFAULT_ITER 3 - -/* MPI info */ -int mpi_rank, mpi_size; -int mpi_namelen; -char mpi_name[MPI_MAX_PROCESSOR_NAME]; - -/* Usage information */ -static void usage(void) -{ - printf("usage: benchpar [-d <# of dims>] [-s ] [-f ] [-h]\n"); - printf(" [-S ] [-I] [-c] [-i <# of iterations>\n"); - printf(" -c - Use chunked storage for dataset with 1-1 exact\n"); - printf(" mapping of chunks to hyperslabs\n"); - printf(" Default: off (i.e. contiguous storage)\n"); - printf(" -d <# of dims> - Number of dimensions of the dataset\n"); - printf(" Default: 3\n"); - printf(" -f - Set the name of the test file\n"); - printf(" Default: /tmp//benchpar.h5\n"); - printf(" -h - Prints usage information\n"); - printf(" -i <# of iters> - Set the number of test iterations to perform\n"); - printf(" Default: 3\n"); - printf(" -I - Use independent parallel I/O\n"); - printf(" Default: use collective parallel I/O\n"); - printf(" -s - Set the size of each of the dataset's dimensions\n"); - printf(" Default: 1024\n"); - printf(" -S - Set the dimension to slice the dataset along\n"); - printf(" Default: 0\n"); -} /* end usage() */ - -/* Create & initialize file creation property list with appropriate properties */ -static hid_t create_fcpl(void) -{ - hid_t fcpl; /* File creation property list */ - - fcpl=H5Pcreate(H5P_FILE_CREATE); - assert(fcpl>0); - - return(fcpl); -} /* end create_fcpl() */ - -/* Create & initialize file access property list with appropriate properties */ -static hid_t create_fapl(MPI_Comm comm, MPI_Info info, int acc_type ) -{ - hid_t fapl; /* File access property list */ - herr_t ret; /* Generic return value */ - - fapl = H5Pcreate (H5P_FILE_ACCESS); - assert(fapl>0); - - /* set parallel access with communicator, using MPI-I/O driver */ - if (acc_type == FACC_MPIO) { - ret = H5Pset_fapl_mpio(fapl, comm, info); - assert(ret>=0); - } /* end if */ - - return (fapl); -} /* end create_fapl() */ - -/* Create & initialize dataset creation property list with appropriate properties */ -static hid_t create_dcpl(unsigned use_chunks, int rank, hsize_t *dims) -{ - hid_t dcpl; /* Dataset creation property list */ - herr_t ret; /* Generic return value */ - - dcpl=H5Pcreate(H5P_DATASET_CREATE); - assert(dcpl>0); - - /* Check if the dataset should be chunked */ - if(use_chunks) { - ret = H5Pset_chunk(dcpl, rank, dims); - assert(ret>=0); - } /* end if */ - - return(dcpl); -} /* end create_dcpl() */ - -/* Create & initialize dataset transfer property list with appropriate properties */ -static hid_t create_dxpl(H5FD_mpio_xfer_t par_mode) -{ - hid_t dxpl; /* Dataset creation property list */ - herr_t ret; /* Generic return value */ - - dxpl=H5Pcreate(H5P_DATASET_XFER); - assert(dxpl>0); - - /* Set collective I/O on this transfer */ - ret=H5Pset_dxpl_mpio(dxpl, par_mode); - assert(ret>=0); - - return(dxpl); -} /* end create_dcpl() */ - -int main(int argc, char *argv[]) -{ - int curr_arg; /* Current command line argument being processed */ - int rank; /* Number of dimensions of the dataset */ - hsize_t dim_size; /* Dimension size of each dimension */ - hsize_t dims[H5S_MAX_RANK]; /* Pointer to array of dimensions */ - hsize_t start[H5S_MAX_RANK]; /* Pointer to array of starting locations for hyperslab selection */ - hsize_t count[H5S_MAX_RANK]; /* Pointer to array of counts for hyperslab selection */ - unsigned slice_dim; /* Dimension to slice up */ - char *file_name=NULL; /* Name of file to put data into */ - hid_t fcpl; /* HDF5 File creation property list ID */ - hid_t fapl; /* HDF5 File access property list ID */ - hid_t dcpl; /* HDF5 Dataset creation property list ID */ - hid_t dxpl; /* HDF5 Dataset transfer property list ID */ - hid_t fid; /* HDF5 file ID */ - hid_t dsid; /* HDF5 dataset ID */ - hid_t file_sid; /* HDF5 dataspace ID for dataset on disk */ - hid_t mem_sid; /* HDF5 dataspace ID for dataset in memory */ - DEFAULT_C_TYPE *buf; /* Buffer to write out */ - hsize_t buf_size; /* Size of buffer to write */ - int i; /* Local index variable */ - herr_t ret; /* Generic return value */ - double start_write_time, end_write_time, elap_write_time; /* Start, end and elapsed time to write raw data */ - double tmp_max_write_time; /* Temporary holders for maximum time for all nodes to perform raw data I/O */ - double max_write_time=-DBL_MAX, min_write_time=DBL_MAX; /* Minimum & maximum time for all nodes to perform raw data I/O */ - double start_file_time, end_file_time, elap_file_time; /* Start, end and elapsed time from file open to file close */ - double tmp_max_file_time; /* Temporary holders for maximum time for all nodes from file open to file close */ - double max_file_time=-DBL_MAX, min_file_time=DBL_MAX; /* Minimum & maximum time for all nodes from file open to file close */ - int vfl_type; /* Type of VFL driver to use */ - H5FD_mpio_xfer_t par_mode; /* Type of parallel I/O to perform */ - unsigned use_chunks; /* Whether to use chunks for dataset or not */ - unsigned num_iter; /* Number of iterations to perform */ - unsigned u; /* Local index variable */ - - /* Un-buffer the stdout and stderr */ - setbuf(stderr, NULL); - setbuf(stdout, NULL); - - /* MPI initialization */ - MPI_Init(&argc,&argv); - MPI_Comm_size(MPI_COMM_WORLD,&mpi_size); - MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank); - MPI_Get_processor_name(mpi_name,&mpi_namelen); - - /* Set some defaults */ - rank=DEFAULT_RANK; - dim_size=DEFAULT_DIM; - slice_dim=DEFAULT_SLICE; - vfl_type=DEFAULT_VFL_DRIVER; - par_mode=DEFAULT_PAR_MODE; - use_chunks=DEFAULT_CHUNK_STORAGE; - num_iter=DEFAULT_ITER; - - /* Parse command line arguments */ - if(argc>1) { - curr_arg=1; - while(curr_arg=rank) { - printf("rank=%d, error, slice dim larger than rank: slice_dim=%d, rank=%d\n",mpi_rank,slice_dim,rank); - goto done; - } /* end if */ - - /* Set rest of defaults */ - if(file_name==NULL) { - char *login; /* Pointer to login name */ - - /* Get the login name for this user */ - login=HDgetlogin(); - if(login==NULL) - login=DEFAULT_USERNAME; - - /* Allocate enough room for the prefix, the login name, two '/'s, the filename and the string terminator */ - file_name=malloc(strlen(DEFAULT_PREFIX)+1+strlen(login)+1+strlen(DEFAULT_FILENAME)+1); - strcpy(file_name,DEFAULT_PREFIX); - strcat(file_name,"/"); - strcat(file_name,login); - strcat(file_name,"/"); - strcat(file_name,DEFAULT_FILENAME); - } /* end if */ - - /* Allocate memory for this process's portion of dataset */ - buf_size=sizeof(DEFAULT_C_TYPE); - for(i=0; i0); - - /* Create file access property list */ - fapl=create_fapl(MPI_COMM_WORLD,MPI_INFO_NULL,vfl_type); - assert(fapl>0); - - /* Get file start time */ - start_file_time = MPI_Wtime(); - - /* Create file */ - fid=H5Fcreate(file_name,H5F_ACC_TRUNC,fcpl,fapl); - assert(fid>0); - - /* Close file creation property list */ - ret=H5Pclose(fcpl); - assert(ret>=0); - - /* Close file access property list */ - ret=H5Pclose(fapl); - assert(ret>=0); - - /* Create dataspace for dataset on disk */ - for(i=0; i0); - - /* Create dataspace for buffer in memory */ - for(i=0; i0); - - /* Create dataset creation property list */ - dcpl=create_dcpl(use_chunks,rank,dims); - assert(dcpl>0); - - /* Create dataset */ - dsid = H5Dcreate2(fid, DEFAULT_DATASET_NAME, DEFAULT_HDF5_DATATYPE, file_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); - assert(dsid > 0); - - /* Close dataset creation property list */ - ret=H5Pclose(dcpl); - assert(ret>=0); - - /* Select hyperslab for file dataspace */ - for(i=0; i=0); - - /* Create dataset transfer property list */ - dxpl=create_dxpl(par_mode); - assert(dxpl>0); - - /* Get raw data start time */ - start_write_time = MPI_Wtime(); - - /* Write hyperslab to dataset */ - ret = H5Dwrite(dsid, DEFAULT_HDF5_DATATYPE, mem_sid, - file_sid, dxpl, buf); - assert(ret>=0); - - /* Get stop time for raw data timer */ - end_write_time = MPI_Wtime(); - - /* Close dataset transfer property list */ - ret=H5Pclose(dxpl); - assert(ret>=0); - - /* Close memory dataspace */ - ret=H5Sclose(mem_sid); - assert(ret>=0); - - /* Close file dataspace */ - ret=H5Sclose(file_sid); - assert(ret>=0); - - /* Close dataset */ - ret=H5Dclose(dsid); - assert(ret>=0); - - /* Close file */ - ret=H5Fclose(fid); - assert(ret>=0); - - /* Get stop time for file timer */ - end_file_time = MPI_Wtime(); - - /* Compute timing results */ - elap_write_time=end_write_time-start_write_time; - elap_file_time=end_file_time-start_file_time; - - /* Collect the minimum and maximum times by MPI reduces */ - MPI_Allreduce(&elap_write_time, &tmp_max_write_time, 1, MPI_DOUBLE, MPI_MAX, MPI_COMM_WORLD); - MPI_Allreduce(&elap_file_time, &tmp_max_file_time, 1, MPI_DOUBLE, MPI_MAX, MPI_COMM_WORLD); - - /* Track the fastest & slowest total runs */ - if(tmp_max_write_time>max_write_time) - max_write_time=tmp_max_write_time; - if(tmp_max_write_timemax_file_time) - max_file_time=tmp_max_file_time; - if(tmp_max_file_time - * Thursday, May 14, 1998 - * - * Purpose: Checks the effect of various I/O request sizes and raw data - * cache sizes. Performance depends on the amount of data read - * from disk and we use a filter to get that number. - */ - -/* See H5private.h for how to include headers */ -#undef NDEBUG -#include "hdf5.h" - -#ifdef H5_STDC_HEADERS -# include -# include -# include -# include -#endif - - -#if !defined(H5_HAVE_ATTRIBUTE) || defined __cplusplus -# undef __attribute__ -# define __attribute__(X) /*void*/ -# define UNUSED /*void*/ -#else -# define UNUSED __attribute__((unused)) -#endif - -#define FILE_NAME "chunk.h5" -#define LINESPOINTS "lines" -#define CH_SIZE 100 /*squared in terms of bytes */ -#define DS_SIZE 20 /*squared in terms of chunks */ -#define FILTER_COUNTER 305 -#define READ 0 -#define WRITE 1 -#define MIN(X,Y) ((X)<(Y)?(X):(Y)) -#define MAX(X,Y) ((X)>(Y)?(X):(Y)) -#define SQUARE(X) ((X)*(X)) - -/* The row-major test */ -#define RM_CACHE_STRT 25 -#define RM_CACHE_END 25 -#define RM_CACHE_DELT 5 -#define RM_START 0.50 -#define RM_END 5.00 -#define RM_DELTA 0.50 -#define RM_W0 0.0 -#define RM_NRDCC 521 - -/* Diagonal test */ -#define DIAG_CACHE_STRT 25 -#define DIAG_CACHE_END 25 -#define DIAG_CACHE_DELT 5 -#define DIAG_START 0.50 -#define DIAG_END 5.00 -#define DIAG_DELTA 0.50 -/* #define DIAG_W0 0.65 */ -/* #define DIAG_NRDCC 521 */ - -static size_t nio_g; -static hid_t fapl_g = -1; - -/* Local function prototypes */ -static size_t -counter (unsigned UNUSED flags, size_t cd_nelmts, - const unsigned *cd_values, size_t nbytes, - size_t *buf_size, void **buf); - -/* This message derives from H5Z */ -const H5Z_class2_t H5Z_COUNTER[1] = {{ - H5Z_CLASS_T_VERS, /* H5Z_class_t version */ - FILTER_COUNTER, /* Filter id number */ - 1, 1, /* Encoding and decoding enabled */ - "counter", /* Filter name for debugging */ - NULL, /* The "can apply" callback */ - NULL, /* The "set local" callback */ - counter, /* The actual filter function */ -}}; - - -/*------------------------------------------------------------------------- - * Function: counter - * - * Purpose: Count number of bytes but don't do anything. - * - * Return: Success: src_nbytes-1 - * - * Failure: never fails - * - * Programmer: Robb Matzke - * Thursday, May 14, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static size_t -counter (unsigned UNUSED flags, size_t UNUSED cd_nelmts, - const unsigned UNUSED *cd_values, size_t nbytes, - size_t UNUSED *buf_size, void UNUSED **buf) -{ - nio_g += nbytes; - return nbytes; -} - - -/*------------------------------------------------------------------------- - * Function: create_dataset - * - * Purpose: Creates a square dataset with square chunks, registers a - * stupid compress/uncompress pair for counting I/O, and - * initializes the dataset. The chunk size is in bytes, the - * dataset size is in terms of chunks. - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, May 14, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -create_dataset (void) -{ - hid_t file, space, dcpl, dset; - hsize_t size[2]; - signed char *buf; - - /* The file */ - file = H5Fcreate (FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_g); - - /* The data space */ - size[0] = size[1] = DS_SIZE * CH_SIZE; - space = H5Screate_simple(2, size, size); - - /* The storage layout and compression */ - dcpl = H5Pcreate(H5P_DATASET_CREATE); - size[0] = size[1] = CH_SIZE; - H5Pset_chunk(dcpl, 2, size); - H5Zregister(H5Z_COUNTER); - H5Pset_filter(dcpl, FILTER_COUNTER, 0, 0, NULL); - - /* The dataset */ - dset = H5Dcreate2(file, "dset", H5T_NATIVE_SCHAR, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); - assert(dset>=0); - - /* The data */ - buf = calloc(1, SQUARE (DS_SIZE*CH_SIZE)); - H5Dwrite(dset, H5T_NATIVE_SCHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - free(buf); - - /* Close */ - H5Dclose(dset); - H5Sclose(space); - H5Pclose(dcpl); - H5Fclose(file); -} - - -/*------------------------------------------------------------------------- - * Function: test_rowmaj - * - * Purpose: Reads the entire dataset using the specified size-squared - * I/O requests in row major order. - * - * Return: Efficiency: data requested divided by data actually read. - * - * Programmer: Robb Matzke - * Thursday, May 14, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static double -test_rowmaj (int op, size_t cache_size, size_t io_size) -{ - hid_t file, dset, mem_space, file_space; - signed char *buf = calloc (1, (size_t)(SQUARE(io_size))); - hsize_t i, j, hs_size[2]; - hsize_t hs_offset[2]; - int mdc_nelmts; - size_t rdcc_nelmts; - double w0; - - H5Pget_cache (fapl_g, &mdc_nelmts, &rdcc_nelmts, NULL, &w0); -#ifdef RM_W0 - w0 = RM_W0; -#endif -#ifdef RM_NRDCC - rdcc_nelmts = RM_NRDCC; -#endif - H5Pset_cache (fapl_g, mdc_nelmts, rdcc_nelmts, - cache_size*SQUARE (CH_SIZE), w0); - file = H5Fopen(FILE_NAME, H5F_ACC_RDWR, fapl_g); - dset = H5Dopen2(file, "dset", H5P_DEFAULT); - file_space = H5Dget_space(dset); - nio_g = 0; - - for (i=0; i0) nio -= SQUARE (io_size-offset); - } - - free (buf); - H5Sclose (file_space); - H5Dclose (dset); - H5Fclose (file); - - /* - * The extra cast in the following statement is a bug workaround for the - * Win32 version 5.0 compiler. - * 1998-11-06 ptl - */ - return (double)(hssize_t)nio/(hssize_t)nio_g; -} - - -/*------------------------------------------------------------------------- - * Function: main - * - * Purpose: See file prologue. - * - * Return: Success: - * - * Failure: - * - * Programmer: Robb Matzke - * Thursday, May 14, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -int -main (void) -{ - size_t io_size; - double effic, io_percent; - FILE *f, *d; - size_t cache_size; - double w0; - - /* - * Create a global file access property list. - */ - fapl_g = H5Pcreate (H5P_FILE_ACCESS); - H5Pget_cache (fapl_g, NULL, NULL, NULL, &w0); - - /* Create the file */ - create_dataset (); - f = fopen ("x-gnuplot", "w"); - - printf("Test %8s %8s %8s\n", "CacheSz", "ChunkSz", "Effic"); - printf("--------- -------- -------- --------\n"); - -#if 1 - /* - * Test row-major reading of the dataset with various sizes of request - * windows. - */ - if (RM_CACHE_STRT==RM_CACHE_END) { - fprintf (f, "set yrange [0:1.2]\n"); - fprintf (f, "set ytics 0, 0.1, 1\n"); - fprintf (f, "set xlabel \"%s\"\n", - "Request size as a fraction of chunk size"); - fprintf (f, "set ylabel \"Efficiency\"\n"); - fprintf (f, "set title \"Cache %d chunks, w0=%g, " - "Size=(total=%d, chunk=%d)\"\n", - RM_CACHE_STRT, w0, DS_SIZE*CH_SIZE, CH_SIZE); - } else { - fprintf (f, "set autoscale\n"); - fprintf (f, "set hidden3d\n"); - } - - fprintf (f, "set terminal postscript\nset output \"x-rowmaj-rd.ps\"\n"); - fprintf (f, "%s \"x-rowmaj-rd.dat\" title \"RowMaj-Read\" with %s\n", - RM_CACHE_STRT==RM_CACHE_END?"plot":"splot", - LINESPOINTS); - fprintf (f, "set terminal x11\nreplot\n"); - d = fopen ("x-rowmaj-rd.dat", "w"); - for (cache_size=RM_CACHE_STRT; - cache_size<=RM_CACHE_END; - cache_size+=RM_CACHE_DELT) { - for (io_percent=RM_START; io_percent<=RM_END; io_percent+=RM_DELTA) { - io_size = MAX (1, (size_t)(CH_SIZE*io_percent)); - printf ("Rowmaj-rd %8d %8.2f", (int)cache_size, io_percent); - fflush (stdout); - effic = test_rowmaj (READ, cache_size, io_size); - printf (" %8.2f\n", effic); - if (RM_CACHE_STRT==RM_CACHE_END) { - fprintf (d, "%g %g\n", io_percent, effic); - } else { - fprintf (d, "%g\n", effic); - } - } - fprintf (d, "\n"); - } - fclose (d); - fprintf (f, "pause -1\n"); -#endif - -#if 1 - /* - * Test row-major writing of the dataset with various sizes of request - * windows. - */ - if (RM_CACHE_STRT==RM_CACHE_END) { - fprintf (f, "set yrange [0:1.2]\n"); - fprintf (f, "set ytics 0, 0.1, 1\n"); - fprintf (f, "set xlabel \"%s\"\n", - "Request size as a fraction of chunk size"); - fprintf (f, "set ylabel \"Efficiency\"\n"); - fprintf (f, "set title \"Cache %d chunks,w0=%g, " - "Size=(total=%d, chunk=%d)\"\n", - RM_CACHE_STRT, w0, DS_SIZE*CH_SIZE, CH_SIZE); - } else { - fprintf (f, "set autoscale\n"); - fprintf (f, "set hidden3d\n"); - } - - fprintf (f, "set terminal postscript\nset output \"x-rowmaj-wr.ps\"\n"); - fprintf (f, "%s \"x-rowmaj-wr.dat\" title \"RowMaj-Write\" with %s\n", - RM_CACHE_STRT==RM_CACHE_END?"plot":"splot", - LINESPOINTS); - fprintf (f, "set terminal x11\nreplot\n"); - d = fopen ("x-rowmaj-wr.dat", "w"); - for (cache_size=RM_CACHE_STRT; - cache_size<=RM_CACHE_END; - cache_size+=RM_CACHE_DELT) { - for (io_percent=RM_START; io_percent<=RM_END; io_percent+=RM_DELTA) { - io_size = MAX (1, (size_t)(CH_SIZE*io_percent)); - printf ("Rowmaj-wr %8d %8.2f", (int)cache_size, io_percent); - fflush (stdout); - effic = test_rowmaj (WRITE, cache_size, io_size); - printf (" %8.2f\n", effic); - if (RM_CACHE_STRT==RM_CACHE_END) { - fprintf (d, "%g %g\n", io_percent, effic); - } else { - fprintf (d, "%g\n", effic); - } - } - fprintf (d, "\n"); - } - fclose (d); - fprintf (f, "pause -1\n"); -#endif - -#if 1 - /* - * Test diagonal read - */ - if (DIAG_CACHE_STRT==DIAG_CACHE_END) { - fprintf (f, "set yrange [0:1.2]\n"); - fprintf (f, "set ytics 0, 0.1, 1\n"); - fprintf (f, "set xlabel \"%s\"\n", - "Request size as a fraction of chunk size"); - fprintf (f, "set ylabel \"Efficiency\"\n"); - fprintf (f, "set title \"Cache %d chunks,w0=%g, " - "Size=(total=%d, chunk=%d)\"\n", - DIAG_CACHE_STRT, w0, DS_SIZE*CH_SIZE, CH_SIZE); - } else { - fprintf (f, "set autoscale\n"); - fprintf (f, "set hidden3d\n"); - } - fprintf (f, "set terminal postscript\nset output \"x-diag-rd.ps\"\n"); - fprintf (f, "%s \"x-diag-rd.dat\" title \"Diag-Read\" with %s\n", - DIAG_CACHE_STRT==DIAG_CACHE_END?"plot":"splot", LINESPOINTS); - fprintf (f, "set terminal x11\nreplot\n"); - d = fopen ("x-diag-rd.dat", "w"); - for (cache_size=DIAG_CACHE_STRT; - cache_size<=DIAG_CACHE_END; - cache_size+=DIAG_CACHE_DELT) { - for (io_percent=DIAG_START; - io_percent<=DIAG_END; - io_percent+=DIAG_DELTA) { - io_size = MAX (1, (size_t)(CH_SIZE*io_percent)); - printf ("Diag-rd %8d %8.2f", (int)cache_size, io_percent); - fflush (stdout); - effic = test_diag (READ, cache_size, io_size, MAX (1, io_size/2)); - printf (" %8.2f\n", effic); - if (DIAG_CACHE_STRT==DIAG_CACHE_END) { - fprintf (d, "%g %g\n", io_percent, effic); - } else { - fprintf (d, "%g\n", effic); - } - } - fprintf (d, "\n"); - } - fclose (d); - fprintf (f, "pause -1\n"); -#endif - -#if 1 - /* - * Test diagonal write - */ - if (DIAG_CACHE_STRT==DIAG_CACHE_END) { - fprintf (f, "set yrange [0:1.2]\n"); - fprintf (f, "set ytics 0, 0.1, 1\n"); - fprintf (f, "set xlabel \"%s\"\n", - "Request size as a fraction of chunk size"); - fprintf (f, "set ylabel \"Efficiency\"\n"); - fprintf (f, "set title \"Cache %d chunks, w0=%g, " - "Size=(total=%d, chunk=%d)\"\n", - DIAG_CACHE_STRT, w0, DS_SIZE*CH_SIZE, CH_SIZE); - } else { - fprintf (f, "set autoscale\n"); - fprintf (f, "set hidden3d\n"); - } - fprintf (f, "set terminal postscript\nset output \"x-diag-wr.ps\"\n"); - fprintf (f, "%s \"x-diag-wr.dat\" title \"Diag-Write\" with %s\n", - DIAG_CACHE_STRT==DIAG_CACHE_END?"plot":"splot", LINESPOINTS); - fprintf (f, "set terminal x11\nreplot\n"); - d = fopen ("x-diag-wr.dat", "w"); - for (cache_size=DIAG_CACHE_STRT; - cache_size<=DIAG_CACHE_END; - cache_size+=DIAG_CACHE_DELT) { - for (io_percent=DIAG_START; - io_percent<=DIAG_END; - io_percent+=DIAG_DELTA) { - io_size = MAX (1, (size_t)(CH_SIZE*io_percent)); - printf ("Diag-wr %8d %8.2f", (int)cache_size, io_percent); - fflush (stdout); - effic = test_diag (WRITE, cache_size, io_size, MAX (1, io_size/2)); - printf (" %8.2f\n", effic); - if (DIAG_CACHE_STRT==DIAG_CACHE_END) { - fprintf (d, "%g %g\n", io_percent, effic); - } else { - fprintf (d, "%g\n", effic); - } - } - fprintf (d, "\n"); - } - fclose (d); - fprintf (f, "pause -1\n"); -#endif - - - H5Pclose (fapl_g); - fclose (f); - return 0; -} - diff --git a/perform/gen_report.pl b/perform/gen_report.pl deleted file mode 100755 index 285f5d7..0000000 --- a/perform/gen_report.pl +++ /dev/null @@ -1,527 +0,0 @@ -#!/usr/bin/perl -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. The full HDF5 copyright notice, including -# terms governing use, modification, and redistribution, is contained in -# the files COPYING and Copyright.html. COPYING can be found at the root -# of the source code distribution tree; Copyright.html can be found at the -# root level of an installed copy of the electronic HDF5 document set and -# is linked from the top-level documents page. It can also be found at -# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have -# access to either file, you may request a copy from help@hdfgroup.org. -# - -# -# Generates an ASCII and Excel-importable file of tables representing -# the output of running the "pio_perf" command. The name of the input -# file is important. The name should reflect the command-line options -# used in the performance test. It needs to be of the form: -# -# f#[GMK].i#.d#.X#[GMK].x#[GMK]..* -# -# For example: -# -# PIO_output_f1G.i2.d1.X2M.x128K.frost -# -# for a 1GB sized file ran for 2 iterations with 1 dataset from xfer -# buffer size of 128KB to 2MB on the frost machine. -# -# The output file will have the same name as the input, but will append -# ".ascii" for the ASCII file and ".excel" for the Excel-importable -# file. -# -# The data structure used in this program looks like: -# -# %results = { -# num_proc => ( -# %xfer_size => ( -# %posix = { -# 'write-only' => ##, -# 'write-close' => ##, -# 'read-only' => ##, -# 'read-close' => ## -# }, -# %mpio = { -# 'write-only' => ##, -# 'write-close' => ##, -# 'read-only' => ##, -# 'read-close' => ## -# }, -# %phdf = { -# 'write-only' => ##, -# 'write-close' => ##, -# 'read-only' => ##, -# 'read-close' => ## -# } -# ) -# ) -# } - -use IO::Handle; -use Getopt::Long; -use List::Util qw[max]; - -if ($#ARGV == -1) { - usage(); -} - -my ($ascii_output, $excel_output); - -GetOptions("data_type=s"=>\$data_type, - "buffer_size=i"=>\$transfer_buffer_size, - "procs=i"=>\$num_procs_graph, - "help!"=>\$help, - "throughput=s"=>\$throughput_type, - "io_type=i"=>\$io_type, - "3d!"=>\$plot_3d); - -usage() if $help or !@ARGV; - -$throughput_type = "average" if !$throughput_type; -$io_type = 7 if !$io_type; - -foreach my $arg (@ARGV) { - - if ($arg !~ /^-/) { - $arg =~ /f([0-9]+.)\.i([0-9]+)\.d([0-9]+)\.X([0-9]+.)\.x([0-9]+.)\.(.*)/; - - my $output = $arg . $1 . ".X" . $4 . ".x" . $5 . "." . $6; - - $ascii_output = $output . ".ascii"; - $excel_output = $output . ".excel"; - - open(INPUT, "<$arg") or die "error: cannot open file $arg: $!\n"; - open(ASCII_OUTPUT, ">$ascii_output") or - die "error: cannot open file $ascii_output: $!\n"; - open(EXCEL_OUTPUT, ">$excel_output") or - die "error: cannot open file $excel_output: $!\n"; - } - else - { - die "error: unrecognized option: $arg\n"; - } -} - -my %results; -my $num_procs = 0; -my ($xfer_size, $avg_type, $type); - -my $posix = 0, $mpio = 1, $phdf5 = 2; - -##"==== End of Parameters ====" - -while () { - if (/Number of processors = ([0-9]+)/) { - $num_procs = $1; - } - - if (/Transfer Buffer Size: ([0-9]+)/) { - $xfer_size = $1; - } - - $type = $posix if /POSIX/; - $type = $mpio if /MPIO/; - $type = $phdf5 if /PHDF5/; - - if (/Write Open/) { - $avg_type = "write-close"; - } elsif (/Write/) { - $avg_type = "write-only"; - } elsif (/Read Open/) { - $avg_type = "read-close"; - } elsif (/Read/) { - $avg_type = "read-only"; - } - - if($throughput_type eq "max") - { - if (/Maximum Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) { - $results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1; - } - } - elsif($throughput_type eq "min") - { - if (/Minimum Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) { - $results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1; - } - } - elsif($throughput_type eq "average") - { - if (/Average Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) { - $results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1; - } - } -} - -sub usage { - print "Usage: gen_reporl.pl [options] FILE - options are:\n - -data_type \"data_type\" plots the results for \"write-only\",\"read-only\", \"write-close\", or \"read-close\" (default is write-only)\n - -buffer_size \"buffer_size\" plots data from this buffer size (in kilobytes, default is 128)\n - -procs \"num_procs\" plots data from the run with num_procs processors (default is the highest number of processors for which there is data).\n - -throughput \"throughput_type\" plots either the \"max\", \"min\", or \"average\" throughput (default is average)\n - -io_type \"io_type\" where \"io_type\" is the bitwise or of the io_type for which plotting is desired (1 for POSIX, 2 for MPIO, 4 for PHDF5 (default is 7 (all))\n - -3d if present, does a 3d plot in addition to the normal ones\n"; - - exit 1; -} - -sub create_excel_output_header { - my $output_header; - my $kb = 1024; - my $mb = $kb * $kb; - - foreach my $key (sort { $a <=> $b } keys(%{$results{$num_procs}})) { - if ($key < $mb) { - $key /= $kb; - $output_header .= "\t". $key . "K"; - } else { - $key /= $mb; - $output_header .= "\t". $key . "M"; - } - } - - $output_header; -} - -sub create_excel_output_string { - my ($t) = @_; - my $output_content = ""; - - foreach my $procs (sort { $b <=> $a } keys(%results)) { - $output_content .= "\n$procs Procs"; - $output_content .= "\n" . create_excel_output_header; - $output_content .= "\n POSIX"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content .= "\t$results{$procs}{$xfer}[0]{$t}"; - } - - $output_content .= "\n MPIO"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content .= "\t$results{$procs}{$xfer}[1]{$t}"; - } - - $output_content .= "\n PHDF5"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content .= "\t$results{$procs}{$xfer}[2]{$t}"; - } - - $output_content .= "\n"; - } - - $output_content; -} - -sub is_defined { - my ($t) = @_; - my $def = 1; - - foreach my $procs (sort { $b <=> $a } keys(%results)) { - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - if (!defined($results{$procs}{$xfer}[0]{$t})) { - $def = 0; - } - } - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - if (!defined($results{$procs}{$xfer}[0]{$t})) { - $def = 0; - } - } - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - if (!defined($results{$procs}{$xfer}[0]{$t})) { - $def = 0; - } - } - } - - $def; -} - -sub write_excel_file { - print EXCEL_OUTPUT "\nWrite-Only\n"; - print EXCEL_OUTPUT create_excel_output_string("write-only"); - print EXCEL_OUTPUT "\nWrite-Close\n"; - print EXCEL_OUTPUT create_excel_output_string("write-close"); - - if (is_defined("read-only")) { - print EXCEL_OUTPUT "\nRead-Only\n"; - print EXCEL_OUTPUT create_excel_output_string("read-only"); - print EXCEL_OUTPUT "\nRead-Close\n"; - print EXCEL_OUTPUT create_excel_output_string("read-close"); - } -} - -sub create_ascii_output_header { - my $output_header = " " x 12 . "|"; - my $kb = 1024; - my $mb = $kb * $kb; - - foreach my $key (sort { $a <=> $b } keys(%{$results{$num_procs}})) { - if ($key < $mb) { - $key /= $kb; - $output_header = sprintf("$output_header %-4s |", $key . "K"); - } else { - $key /= $mb; - $output_header = sprintf("$output_header %-4s |", $key . "M"); - } - } - - $output_header; -} - -sub create_ascii_output_string { - my ($t) = @_; - my $output_content = ""; - my $output_header = create_ascii_output_header; - - foreach my $procs (sort { $b <=> $a } keys(%results)) { - $output_content .= "\n$procs Procs"; - $output_content .= "\n$output_header\n"; - $output_content .= "-" x length($output_header); - $output_content .= "\n POSIX |"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content = sprintf("$output_content %-6s |", - $results{$procs}{$xfer}[0]{$t}); - } - - $output_content .= "\n "; - $output_content .= "-" x (length($output_header) - 4); - $output_content .= "\n MPI/IO |"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content = sprintf("$output_content %-6s |", - $results{$procs}{$xfer}[1]{$t}); - } - - $output_content .= "\n "; - $output_content .= "-" x (length($output_header) - 4); - $output_content .= "\n PHDF5 |"; - - foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) { - $output_content = sprintf("$output_content %-6s |", - $results{$procs}{$xfer}[2]{$t}); - } - - $output_content .= "\n"; - $output_content .= "=" x length($output_header); - $output_content .= "\n"; - } - - $output_content; -} - -sub write_ascii_file { - print ASCII_OUTPUT "\nWrite-Only"; - print ASCII_OUTPUT "\n----------\n"; - print ASCII_OUTPUT create_ascii_output_string("write-only"); - print ASCII_OUTPUT "\n\nWrite-Close"; - print ASCII_OUTPUT "\n-----------\n"; - print ASCII_OUTPUT create_ascii_output_string("write-close"); - - if (is_defined("read-only")) { - print ASCII_OUTPUT "\n\nRead-Only"; - print ASCII_OUTPUT "\n---------\n"; - print ASCII_OUTPUT create_ascii_output_string("read-only"); - print ASCII_OUTPUT "\n\nRead-Close"; - print ASCII_OUTPUT "\n----------\n"; - print ASCII_OUTPUT create_ascii_output_string("read-close"); - } -} - -sub draw_plot -{ - my($p_3d) = @_; - - if($p_3d) - { - $counter = 3; - print GNUPLOT_PIPE "splot "; - } - else - { - $counter = 2; - print GNUPLOT_PIPE "plot "; - } - - if($io_type & 1) { - print GNUPLOT_PIPE " \"gnuplot.data\" using 1:"; - - if($p_3d) { print GNUPLOT_PIPE "2:"; } - - print GNUPLOT_PIPE $counter . " title 'POSIX' with linespoints"; - $counter = $counter + 1; - } - if($io_type & 2) { - if($io_type & 1) { print GNUPLOT_PIPE ", "; } - print GNUPLOT_PIPE "\"gnuplot.data\" using 1:"; - - if($p_3d) { print GNUPLOT_PIPE "2:"; } - - print GNUPLOT_PIPE $counter . " title 'MPIO' with linespoints"; - $counter = $counter + 1; - if($io_type & 4) { print GNUPLOT_PIPE ", ";} - } - if($io_type & 4) { - print GNUPLOT_PIPE " \"gnuplot.data\" using 1:"; - - if($p_3d) { print GNUPLOT_PIPE "2:"; } - - print GNUPLOT_PIPE $counter . " title 'PHDF5' with linespoints"; - - } - print GNUPLOT_PIPE "\n"; -} - - -sub plot_default_graph1 { - open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or - die "error: cannot open file gnuplot.data: $!\n"; - - $transfer_buffer_size = 128 if !$transfer_buffer_size; - $data_type = "write-only" if !$data_type; - - #set up the plot - print GNUPLOT_PIPE "set term x11 1\n"; - print GNUPLOT_PIPE "set xlabel \"Number of Processors\"\n"; - print GNUPLOT_PIPE "set title \"" . $data_type . " Performance (Speed vs. Num. Procs)\"\n"; - print GNUPLOT_PIPE "set ylabel \"Bandwdith (MB/s)\"\n"; - print GNUPLOT_PIPE "set label 1 \"Transfer buffer size: " . $transfer_buffer_size . "K\" at graph 0.7, graph 0.7 left \n"; - -#the next line attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis - print GNUPLOT_PIPE "set xtics (\"1\" 1, \"2\" 2, \"4\" 4, \"8\" 8, \"16\" 16, \"32\" 32, \"64\" 64, \"128\" 128, \"256\" 256, \"512\" 512, \"1024\" 1024)\n"; - - - foreach $proc (sort { $a <=> $b }( keys %results )) - { - print GNUPLOT_DATA_OUTPUT $proc . "\t"; - if($io_type & 1) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[0]{$data_type} . "\t"; - } - if($io_type & 2) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[1]{$data_type}. "\t"; - } - if($io_type & 4) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[2]{$data_type}; - } - print GNUPLOT_DATA_OUTPUT "\n"; - - } - - close(GNUPLOT_DATA_OUTPUT); - - draw_plot(0); - - unlink(GNUPLOT_DATA_OUTPUT); - -} - - -sub plot_default_graph2 { - open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or - die "error: cannot open file gnuplot.data: $!\n"; - - $num_procs_graph = max(sort { $a <=> $b }( keys %results )) if !$num_procs_graph; - print "min-rpocs: " . $num_procs_graph; - $data_type = "write-only" if !$data_type; - - #set up the plot - print GNUPLOT_PIPE "set term x11 2\n"; - print GNUPLOT_PIPE "set xlabel \"Transfer Buffer Size (in bytes)\"\n"; - print GNUPLOT_PIPE "set title \"" . $data_type . " Performance (Speed vs. Transfer Buffer Size)\"\n"; - print GNUPLOT_PIPE "set ylabel \"Bandwdith (MB/s)\"\n"; - print GNUPLOT_PIPE "set label 1 \"Procs: " . $num_procs_graph . "\" at graph 0.7, graph 0.7 left \n"; - -#the next line attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis - print GNUPLOT_PIPE "set xtics (\"4K\" 4*1024, \"8K\" 8*1024, \"16K\" 16*1024, \"32K\" 32*1024, \"64K\" 64*1024, \"128K\" 128*1024, \"256K\" 256*1024, \"512K\" 512*1024, \"1M\" 1024*1024, \"2M\" 2048*1024, \"4M\" 4096*1024, \"8M\" 8192*1024, \"16M\" 16384*1024)\n"; - - foreach $xfer (sort {$a <=> $b} ( keys %{$results{$num_procs_graph}} )) - { - print GNUPLOT_DATA_OUTPUT $xfer . "\t"; - if($io_type & 1) { - print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[0]{$data_type} . "\t"; - } - if($io_type & 2) { - print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[1]{$data_type}. "\t"; - } - if($io_type & 4) { - print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[2]{$data_type}; - } - print GNUPLOT_DATA_OUTPUT "\n"; - - } - - close(GNUPLOT_DATA_OUTPUT); - - draw_plot(0); - - unlink(GNUPLOT_DATA_OUTPUT); -} - -sub plot_3d_graph3 { - open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or - die "error: cannot open file gnuplot.data: $!\n"; - - #set up the plot - print GNUPLOT_PIPE "set term x11 3\n"; - print GNUPLOT_PIPE "set xlabel \"Num. Processors\"\n"; - print GNUPLOT_PIPE "set title \"Write Speed v. No. Procs v. Buffer Size\"\n"; - print GNUPLOT_PIPE "set ylabel \"Buffer Size (bytes)\"\n"; - print GNUPLOT_PIPE "set zlabel \"Bandwidth (in MB/s)\"\n"; - print GNUPLOT_PIPE "set nolabel\n"; - print GNUPLOT_PIPE "set dgrid3d 30,30\n"; - print GNUPLOT_PIPE "set hidden3d\n"; - -#the next lines attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis - print GNUPLOT_PIPE "set xtics (\"1\" 1, \"2\" 2, \"4\" 4, \"8\" 8, \"16\" 16, \"32\" 32, \"64\" 64, \"128\" 128, \"256\" 256, \"512\" 512, \"1024\" 1024)\n"; - print GNUPLOT_PIPE "set ytics (\"4K\" 4*1024, \"8K\" 8*1024, \"16K\" 16*1024, \"32K\" 32*1024, \"64K\" 64*1024, \"128K\" 128*1024, \"256K\" 256*1024, \"512K\" 512*1024, \"1M\" 1024*1024, \"2M\" 2048*1024, \"4M\" 4096*1024, \"8M\" 8192*1024, \"16M\" 16384*1024)\n"; - - -#Read speed on z-axis, processors on x, buffer size on y. - - foreach $proc (sort { $a <=> $b }( keys %results )) - { - foreach $xfer (sort {$a <=> $b} ( keys %{$results{$proc}} )) - { - print GNUPLOT_DATA_OUTPUT $proc . "\t" . $xfer . "\t"; - if($io_type & 1) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[0]{"write-only"} . "\t"; - } - if($io_type & 2) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[1]{"write-only"}. "\t"; - } - if($io_type & 4) { - print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[2]{"write-only"}; - } - print GNUPLOT_DATA_OUTPUT "\n"; - - } - } - - close(GNUPLOT_DATA_OUTPUT); - - draw_plot(1); - - unlink(GNUPLOT_DATA_OUTPUT); -} - -open(GNUPLOT_PIPE, "| tee gnuplot.script | gnuplot -persist") || die "Couldn't run gnuplot: $!\n"; -GNUPLOT_PIPE->autoflush(1); - -write_excel_file; -write_ascii_file; -plot_default_graph1; -sleep 1; -plot_default_graph2; -sleep 1; - -plot_3d_graph3 if $plot_3d; -close(GNUPLOT_PIPE); diff --git a/perform/iopipe.c b/perform/iopipe.c deleted file mode 100644 index 85063fa..0000000 --- a/perform/iopipe.c +++ /dev/null @@ -1,503 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Programmer: Robb Matzke - * Thursday, March 12, 1998 - */ - -/* See H5private.h for how to include headers */ -#include "hdf5.h" - -#include "H5private.h" - -#ifdef H5_HAVE_SYS_TIMEB -#include -#endif - - -#define RAW_FILE_NAME "iopipe.raw" -#define HDF5_FILE_NAME "iopipe.h5" -#define HEADING "%-16s" -#define PROGRESS '=' - -#if 0 -/* Normal testing */ -#define REQUEST_SIZE_X 4579 -#define REQUEST_SIZE_Y 4579 -#define NREAD_REQUESTS 45 -#define NWRITE_REQUESTS 45 -#else -/* Speedy testing */ -#define REQUEST_SIZE_X 1000 -#define REQUEST_SIZE_Y 1000 -#define NREAD_REQUESTS 45 -#define NWRITE_REQUESTS 45 -#endif - - -/*------------------------------------------------------------------------- - * Function: print_stats - * - * Purpose: Prints statistics - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, March 12, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -#ifdef H5_HAVE_GETRUSAGE -static void -print_stats (const char *prefix, - struct rusage *r_start, struct rusage *r_stop, - struct timeval *t_start, struct timeval *t_stop, - size_t nbytes) -#else /* H5_HAVE_GETRUSAGE */ -static void -print_stats (const char *prefix, - struct timeval *r_start, struct timeval *r_stop, - struct timeval *t_start, struct timeval *t_stop, - size_t nbytes) -#endif /* H5_HAVE_GETRUSAGE */ -{ - double e_time, bw; -#ifdef H5_HAVE_GETRUSAGE - double u_time, s_time; - - u_time = ((double)(r_stop->ru_utime.tv_sec)+ - (double)(r_stop->ru_utime.tv_usec)/1000000.0) - - ((double)(r_start->ru_utime.tv_sec)+ - (double)(r_start->ru_utime.tv_usec)/1000000.0); - - s_time = ((double)(r_stop->ru_stime.tv_sec)+ - (double)(r_stop->ru_stime.tv_usec)/1000000.0) - - ((double)(r_start->ru_stime.tv_sec)+ - (double)(r_start->ru_stime.tv_usec)/1000000.0); -#endif -#ifndef H5_HAVE_SYS_TIMEB - e_time = ((double)(t_stop->tv_sec)+ - (double)(t_stop->tv_usec)/1000000.0) - - ((double)(t_start->tv_sec)+ - (double)(t_start->tv_usec)/1000000.0); -#else - e_time = ((double)(t_stop->tv_sec)+ - (double)(t_stop->tv_usec)/1000.0) - - ((double)(t_start->tv_sec)+ - (double)(t_start->tv_usec)/1000.0); -#endif - bw = (double)nbytes / e_time; - -#ifdef H5_HAVE_GETRUSAGE - printf (HEADING "%1.2fuser %1.2fsystem %1.2felapsed %1.2fMB/s\n", - prefix, u_time, s_time, e_time, bw/(1024*1024)); -#else - printf (HEADING "%1.2felapsed %1.2fMB/s\n", - prefix, e_time, bw/(1024*1024)); -#endif - -} - - -/*------------------------------------------------------------------------- - * Function: synchronize - * - * Purpose: - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, March 12, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -synchronize (void) -{ -#ifdef H5_HAVE_SYSTEM -#if defined(H5_HAVE_WIN32_API) && ! defined(__CYGWIN__) - _flushall(); -#else - HDsystem("sync"); - HDsystem("df >/dev/null"); -#endif -#endif -} - - -/*------------------------------------------------------------------------- - * Function: main - * - * Purpose: - * - * Return: Success: - * - * Failure: - * - * Programmer: Robb Matzke - * Thursday, March 12, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -int -main (void) -{ - static hsize_t size[2] = {REQUEST_SIZE_X, REQUEST_SIZE_Y}; - static unsigned nread = NREAD_REQUESTS, nwrite = NWRITE_REQUESTS; - - unsigned char *the_data = NULL; - hid_t file, dset, file_space = -1; - herr_t status; -#ifdef H5_HAVE_GETRUSAGE - struct rusage r_start, r_stop; -#else - struct timeval r_start, r_stop; -#endif - struct timeval t_start, t_stop; - int fd; - unsigned u; - hssize_t n; - off_t offset; - hsize_t start[2]; - hsize_t count[2]; - - -#ifdef H5_HAVE_SYS_TIMEB - struct _timeb *tbstart = malloc(sizeof(struct _timeb)); - struct _timeb *tbstop = malloc(sizeof(struct _timeb)); -#endif - /* - * The extra cast in the following statement is a bug workaround for the - * Win32 version 5.0 compiler. - * 1998-11-06 ptl - */ - printf ("I/O request size is %1.1fMB\n", - (double)(hssize_t)(size[0]*size[1])/1024.0*1024); - - /* Open the files */ - file = H5Fcreate (HDF5_FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - assert (file>=0); - fd = HDopen (RAW_FILE_NAME, O_RDWR|O_CREAT|O_TRUNC, 0666); - assert (fd>=0); - - /* Create the dataset */ - file_space = H5Screate_simple (2, size, size); - assert(file_space >= 0); - dset = H5Dcreate2(file, "dset", H5T_NATIVE_UCHAR, file_space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(dset >= 0); - the_data = (unsigned char *)malloc((size_t)(size[0] * size[1])); - - /* initial fill for lazy malloc */ - HDmemset(the_data, 0xAA, (size_t)(size[0] * size[1])); - - /* Fill raw */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "fill raw"); - for(u = 0; u < nwrite; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - HDmemset(the_data, 0xAA, (size_t)(size[0]*size[1])); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("fill raw", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - - /* Fill hdf5 */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "fill hdf5"); - for(u = 0; u < nread; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, - H5P_DEFAULT, the_data); - assert (status>=0); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("fill hdf5", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - /* Write the raw dataset */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "out raw"); - for(u = 0; u < nwrite; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - offset = HDlseek (fd, (off_t)0, SEEK_SET); - assert (0==offset); - n = HDwrite (fd, the_data, (size_t)(size[0]*size[1])); - assert (n>=0 && (size_t)n==size[0]*size[1]); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("out raw", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - /* Write the hdf5 dataset */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "out hdf5"); - for(u = 0; u < nwrite; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - status = H5Dwrite (dset, H5T_NATIVE_UCHAR, H5S_ALL, H5S_ALL, - H5P_DEFAULT, the_data); - assert (status>=0); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("out hdf5", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - /* Read the raw dataset */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "in raw"); - for(u = 0; u < nread; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - offset = HDlseek (fd, (off_t)0, SEEK_SET); - assert (0==offset); - n = HDread (fd, the_data, (size_t)(size[0]*size[1])); - assert (n>=0 && (size_t)n==size[0]*size[1]); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("in raw", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - - /* Read the hdf5 dataset */ - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "in hdf5"); - for(u = 0; u < nread; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, - H5P_DEFAULT, the_data); - assert (status>=0); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc ('\n', stderr); - print_stats ("in hdf5", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*size[0]*size[1])); - - /* Read hyperslab */ - assert (size[0]>20 && size[1]>20); - start[0] = start[1] = 10; - count[0] = count[1] = size[0]-20; - status = H5Sselect_hyperslab (file_space, H5S_SELECT_SET, start, NULL, count, NULL); - assert (status>=0); - synchronize (); -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_start); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_start, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstart); -#endif -#endif - fprintf (stderr, HEADING, "in hdf5 partial"); - for(u = 0; u < nread; u++) { - putc (PROGRESS, stderr); - HDfflush(stderr); - status = H5Dread (dset, H5T_NATIVE_UCHAR, file_space, file_space, - H5P_DEFAULT, the_data); - assert (status>=0); - } -#ifdef H5_HAVE_GETRUSAGE - HDgetrusage(RUSAGE_SELF, &r_stop); -#endif -#ifdef H5_HAVE_GETTIMEOFDAY - HDgettimeofday(&t_stop, NULL); -#else -#ifdef H5_HAVE_SYS_TIMEB - _ftime(tbstop); - t_start.tv_sec = tbstart->time; - t_start.tv_usec = tbstart->millitm; - t_stop.tv_sec = tbstop->time; - t_stop.tv_usec = tbstop->millitm; -#endif -#endif - putc('\n', stderr); - print_stats("in hdf5 partial", - &r_start, &r_stop, &t_start, &t_stop, - (size_t)(nread*count[0]*count[1])); - - - - /* Close everything */ - HDclose(fd); - H5Dclose(dset); - H5Sclose(file_space); - H5Fclose(file); - free(the_data); - - return 0; -} - diff --git a/perform/overhead.c b/perform/overhead.c deleted file mode 100644 index 9341e64..0000000 --- a/perform/overhead.c +++ /dev/null @@ -1,416 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Programmer: Robb Matzke - * Monday, September 28, 1998 - * - * Purpose: Creates a chunked dataset and measures the storage overhead. - */ - -/* See H5private.h for how to include headers */ -#undef NDEBUG -#include "hdf5.h" -#include "H5private.h" - -#ifdef H5_STDC_HEADERS -# include -# include -# include -# include -# include -#endif - -#ifdef H5_HAVE_IO_H -# include -#endif - -#ifdef H5_HAVE_UNISTD_H -# include -# include -#endif - -#ifdef H5_HAVE_IO_H -# include -#endif - -#ifndef H5_HAVE_ATTRIBUTE -# undef __attribute__ -# define __attribute__(X) /*void*/ -# define UNUSED /*void*/ -#else -# define UNUSED __attribute__((unused)) -#endif - -#define FILE_NAME_1 "overhead.h5" -#ifndef FALSE -#define FALSE 0 -#endif /* FALSE */ -#ifndef TRUE -#define TRUE 1 -#endif /* TRUE */ - -typedef enum fill_t { - FILL_ALL, - FILL_FORWARD, - FILL_REVERSE, - FILL_INWARD, - FILL_OUTWARD, - FILL_RANDOM -} fill_t; - - -/*------------------------------------------------------------------------- - * Function: usage - * - * Purpose: Prints a usage message and exits. - * - * Return: never returns - * - * Programmer: Robb Matzke - * Wednesday, September 30, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -usage(const char *prog) -{ - fprintf(stderr, "usage: %s [STYLE|cache] [LEFT [MIDDLE [RIGHT]]]\n", - prog); - fprintf(stderr, "\ - STYLE is the order that the dataset is filled and should be one of:\n\ - forward -- Fill the dataset from lowest address to highest\n\ - address. This style tests the right split ratio.\n\ - reverse -- Fill the dataset from highest address to lowest\n\ - address. This is the reverse order of `forward' and\n\ - tests the left split ratio.\n\ - inward -- Fill beginning at both the lowest and highest\n\ - addresses and work in toward the center of the\n\ - dataset. This tests the middle split ratio.\n\ - outward -- Start at the center of the dataset and work outward\n\ - toward the lowest and highest addresses. This tests\n\ - both left and right split ratios.\n\ - random -- Write the chunks of the dataset in random order. This\n\ - tests all split ratios.\n\ - If no fill style is specified then all fill styles are tried and a\n\ - single value is printed for each one.\n\ -\n\ - If the word `cache' is used instead of a fill style then the raw data\n\ - cache is enabled. It is not possible to enable the raw data cache when\n\ - a specific fill style is used because H5Fflush() is called after each\n\ - chunk is written in order to calculate overhead during the test. If\n\ - the cache is enabled then chunks are written to disk in different orders\n\ - than the actual H5Dwrite() calls in the test due to collisions and the\n\ - resulting B-tree will be split differently.\n\ -\n\ - LEFT, MIDDLE, and RIGHT are the ratios to use for splitting and should\n\ - be values between zero and one, inclusive.\n"); - exit(1); -} - - -/*------------------------------------------------------------------------- - * Function: cleanup - * - * Purpose: Removes test files - * - * Return: void - * - * Programmer: Robb Matzke - * Thursday, June 4, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -cleanup (void) -{ - if (!getenv ("HDF5_NOCLEANUP")) { - remove (FILE_NAME_1); - } -} - - -/*------------------------------------------------------------------------- - * Function: display_error_cb - * - * Purpose: Displays the error stack after printing "*FAILED*". - * - * Return: Success: 0 - * - * Failure: -1 - * - * Programmer: Robb Matzke - * Wednesday, March 4, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -display_error_cb (hid_t estack, void UNUSED *client_data) -{ - puts ("*FAILED*"); - H5Eprint2(estack, stdout); - - return 0; -} - - -/*------------------------------------------------------------------------- - * Function: test - * - * Purpose: The guts of the test - * - * Return: Success: 0 - * - * Failure: number of errors - * - * Programmer: Robb Matzke - * Wednesday, September 30, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static int -test(fill_t fill_style, const double splits[], - hbool_t verbose, hbool_t use_rdcc) -{ - hid_t file = (-1), fapl = (-1), dcpl = (-1), xfer = (-1), mspace = (-1), fspace = (-1), dset = (-1); - hsize_t ch_size[1] = {1}; /*chunk size */ - hsize_t cur_size[1] = {1000}; /*current dataset size */ - hsize_t max_size[1] = {H5S_UNLIMITED}; /*maximum dataset size */ - hsize_t hs_start[1]; /*hyperslab start offset*/ - hsize_t hs_count[1] = {1}; /*hyperslab nelmts */ - int fd = (-1); /*h5 file direct */ - int *had = NULL; /*for random filling */ - const char *sname=NULL; /*fill style nam */ - int mdc_nelmts; /*num meta objs to cache*/ - hsize_t i; - int j; - h5_stat_t sb; - - if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) goto error; - if(!use_rdcc) { - if(H5Pget_cache(fapl, &mdc_nelmts, NULL, NULL, NULL) < 0) goto error; - if(H5Pset_cache(fapl, mdc_nelmts, 0, 0, 0.0) < 0) goto error; - } - if((file = H5Fcreate(FILE_NAME_1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) goto error; - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto error; - if(H5Pset_chunk(dcpl, 1, ch_size) < 0) goto error; - if((xfer = H5Pcreate(H5P_DATASET_XFER)) < 0) goto error; - if(H5Pset_btree_ratios(xfer, splits[0], splits[1], splits[2]) < 0) goto error; - if((fspace = H5Screate_simple(1, cur_size, max_size)) < 0) goto error; - if((mspace = H5Screate_simple(1, ch_size, ch_size)) < 0) goto error; - if((dset = H5Dcreate2(file, "chunked", H5T_NATIVE_INT, - fspace, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) goto error; - if ((fd=HDopen(FILE_NAME_1, O_RDONLY, 0666)) < 0) goto error; - - if(FILL_RANDOM==fill_style) - had = calloc((size_t)cur_size[0], sizeof(int)); - - for (i=1; i<=cur_size[0]; i++) { - - /* Decide which chunk to write to */ - switch (fill_style) { - case FILL_FORWARD: - hs_start[0] = i-1; - break; - case FILL_REVERSE: - hs_start[0] = cur_size[0]-i; - break; - case FILL_INWARD: - hs_start[0] = i%2 ? i/2 : cur_size[0]-i/2; - break; - case FILL_OUTWARD: - j = (int)(cur_size[0]-i)+1; - hs_start[0] = j%2 ? j/2 : (hssize_t)cur_size[0]-j/2; - break; - case FILL_RANDOM: - for (j=HDrand()%(int)cur_size[0]; had[j]; j=(j+1)%(int)cur_size[0]) - /*void*/; - hs_start[0] = j; - had[j] = 1; - break; - case FILL_ALL: - abort(); - default: - /* unknown request */ - HDfprintf(stderr, "Unknown fill style\n"); - goto error; - break; - } - - /* Write the chunk */ - if (H5Sselect_hyperslab(fspace, H5S_SELECT_SET, hs_start, NULL, - hs_count, NULL) < 0) goto error; - if (H5Dwrite(dset, H5T_NATIVE_INT, mspace, fspace, xfer, &i) < 0) { - goto error; - } - - /* Determine overhead */ - if (verbose) { - if (H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error; - if (HDfstat(fd, &sb) < 0) goto error; - /* - * The extra cast in the following statement is a bug workaround - * for the Win32 version 5.0 compiler. - * 1998-11-06 ptl - */ - printf("%4lu %8.3f ***\n", - (unsigned long)i, - (double)(hssize_t)(sb.st_size-i*sizeof(int))/(hssize_t)i); - } - } - - if(had) { - free(had); - had = NULL; - } /* end if */ - - H5Dclose(dset); - H5Sclose(mspace); - H5Sclose(fspace); - H5Pclose(dcpl); - H5Pclose(xfer); - H5Fclose(file); - - if (!verbose) { - switch (fill_style) { - case FILL_FORWARD: - sname = "forward"; - break; - case FILL_REVERSE: - sname = "reverse"; - break; - case FILL_INWARD: - sname = "inward"; - break; - case FILL_OUTWARD: - sname = "outward"; - break; - case FILL_RANDOM: - sname = "random"; - break; - case FILL_ALL: - abort(); - default: - /* unknown request */ - HDfprintf(stderr, "Unknown fill style\n"); - goto error; - break; - } - - if (HDfstat(fd, &sb) < 0) goto error; - printf("%-7s %8.3f\n", sname, - (double)(hssize_t)(sb.st_size-cur_size[0]*sizeof(int))/ - (hssize_t)cur_size[0]); - } - HDclose(fd); - - return 0; - - error: - H5Dclose(dset); - H5Sclose(mspace); - H5Sclose(fspace); - H5Pclose(dcpl); - H5Pclose(xfer); - H5Fclose(file); - if(had) - free(had); - HDclose(fd); - return 1; -} - - -/*------------------------------------------------------------------------- - * Function: main - * - * Purpose: - * - * Return: Success: zero - * - * Failure: non-zero - * - * Programmer: Robb Matzke - * Monday, September 28, 1998 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -int -main(int argc, char *argv[]) -{ - hid_t xfer; - fill_t fill_style = FILL_ALL; - hbool_t use_cache = FALSE; - double splits[3]; - int i, j, nerrors=0; - - /* Default split ratios */ - H5Eset_auto2(H5E_DEFAULT, display_error_cb, NULL); - - if((xfer = H5Pcreate(H5P_DATASET_XFER)) < 0) goto error; - if(H5Pget_btree_ratios(xfer, splits+0, splits+1, splits+2) < 0) goto error; - if(H5Pclose(xfer) < 0) goto error; - - /* Parse command-line options */ - for(i = 1, j = 0; i < argc; i++) { - if (!strcmp(argv[i], "forward")) { - fill_style = FILL_FORWARD; - } else if (!strcmp(argv[i], "reverse")) { - fill_style = FILL_REVERSE; - } else if (!strcmp(argv[i], "inward")) { - fill_style = FILL_INWARD; - } else if (!strcmp(argv[i], "outward")) { - fill_style = FILL_OUTWARD; - } else if (!strcmp(argv[i], "random")) { - fill_style = FILL_RANDOM; - } else if (!strcmp(argv[i], "cache")) { - use_cache = TRUE; - } else if (j<3 && (isdigit(argv[i][0]) || '.'==argv[i][0])) { - splits[j++] = strtod(argv[i], NULL); - } else { - usage(argv[0]); - } - } - - if (FILL_ALL==fill_style) { - printf("%-7s %8s\n", "Style", "Bytes/Chunk"); - printf("%-7s %8s\n", "-----", "-----------"); - nerrors += test(FILL_FORWARD, splits, FALSE, use_cache); - nerrors += test(FILL_REVERSE, splits, FALSE, use_cache); - nerrors += test(FILL_INWARD, splits, FALSE, use_cache); - nerrors += test(FILL_OUTWARD, splits, FALSE, use_cache); - nerrors += test(FILL_RANDOM, splits, FALSE, use_cache); - } - else { - if (use_cache) usage(argv[0]); - nerrors += test(fill_style, splits, TRUE, FALSE); - } - if (nerrors>0) goto error; - cleanup(); - return 0; - - error: - fprintf(stderr, "*** ERRORS DETECTED ***\n"); - return 1; -} diff --git a/perform/perf.c b/perform/perf.c deleted file mode 100644 index 7d329f0..0000000 --- a/perform/perf.c +++ /dev/null @@ -1,482 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Author: Albert Cheng of NCSA, May 1, 2001. - * This is derived from code given to me by Robert Ross. - * - * NOTE: This code assumes that all command line arguments make it out to all - * the processes that make up the parallel job, which isn't always the case. - * So if it doesn't work on some platform, that might be why. - */ - -#include "hdf5.h" -#include "H5private.h" -#ifdef H5_HAVE_PARALLEL -#include -#include -#include -#ifdef H5_HAVE_UNISTD_H -#include -#endif -#include -#include -#if defined(H5_TIME_WITH_SYS_TIME) -# include -# include -#elif defined(H5_HAVE_SYS_TIME_H) -# include -#else -# include -#endif -#include -#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */ -# include -#endif - -/* Macro definitions */ -/* Verify: - * if val is false (0), print mesg and if fatal is true (non-zero), die. - */ -#define H5FATAL 1 -#define VRFY(val, mesg, fatal) do { \ - if (!val) { \ - printf("Proc %d: ", mynod); \ - printf("*** Assertion failed (%s) at line %4d in %s\n", \ - mesg, (int)__LINE__, __FILE__); \ - if (fatal){ \ - fflush(stdout); \ - goto die_jar_jar_die; \ - } \ - } \ -} while(0) -#define RANK 1 -#define MAX_PATH 1024 - -hsize_t dims[RANK]; /* dataset dim sizes */ -hsize_t block[RANK], stride[RANK], count[RANK]; -hssize_t start[RANK]; -hid_t fid; /* HDF5 file ID */ -hid_t acc_tpl; /* File access templates */ -hid_t sid; /* Dataspace ID */ -hid_t file_dataspace; /* File dataspace ID */ -hid_t mem_dataspace; /* memory dataspace ID */ -hid_t dataset; /* Dataset ID */ -hsize_t opt_alignment = 1; -hsize_t opt_threshold = 1; -int opt_split_vfd = 0; -char *meta_ext, *raw_ext; /* holds the meta and raw file extension if */ - /* opt_split_vfd is set */ - - -/* DEFAULT VALUES FOR OPTIONS */ -int64_t opt_block = 1048576*16; -int opt_iter = 1; -int opt_stripe = -1; -int opt_correct = 0; -int amode = O_RDWR | O_CREAT; -char opt_file[256] = "perftest.out"; -char opt_pvfstab[256] = "notset"; -int opt_pvfstab_set = 0; - -const char *FILENAME[] = { - opt_file, - NULL -}; - -/* function prototypes */ -static int parse_args(int argc, char **argv); - -extern int errno; - -/* globals needed for getopt */ -extern char *optarg; - -int main(int argc, char **argv) -{ - char *buf, *tmp, *buf2, *tmp2, *check; - int i, j, mynod=0, nprocs=1, err, my_correct = 1, correct, myerrno; - double stim, etim; - double write_tim = 0; - double read_tim = 0; - double read_bw, write_bw; - double max_read_tim, max_write_tim; - double min_read_tim, min_write_tim; - double ave_read_tim, ave_write_tim; - int64_t iter_jump = 0; - int64_t seek_position = 0; - MPI_File fh; - MPI_Status status; - int nchars; - char filename[MAX_PATH]; - herr_t ret; /* Generic return value */ - - /* startup MPI and determine the rank of this process */ - MPI_Init(&argc,&argv); - MPI_Comm_size(MPI_COMM_WORLD, &nprocs); - MPI_Comm_rank(MPI_COMM_WORLD, &mynod); - - /* parse the command line arguments */ - parse_args(argc, argv); - - if (mynod == 0) printf("# Using hdf5-io calls.\n"); - - /* kindof a weird hack- if the location of the pvfstab file was - * specified on the command line, then spit out this location into - * the appropriate environment variable: */ - -#if H5_HAVE_SETENV -/* no setenv or unsetenv */ - if (opt_pvfstab_set) { - if((setenv("PVFSTAB_FILE", opt_pvfstab, 1)) < 0){ - perror("setenv"); - goto die_jar_jar_die; - } - } -#endif - - /* this is how much of the file data is covered on each iteration of - * the test. used to help determine the seek offset on each - * iteration */ - iter_jump = nprocs * opt_block; - - /* setup a buffer of data to write */ - if (!(tmp = (char *) malloc(opt_block + 256))) { - perror("malloc"); - goto die_jar_jar_die; - } - buf = tmp + 128 - (((long)tmp) % 128); /* align buffer */ - - if (opt_correct) { - /* do the same buffer setup for verifiable data */ - if (!(tmp2 = (char *) malloc(opt_block + 256))) { - perror("malloc2"); - goto die_jar_jar_die; - } - buf2 = tmp + 128 - (((long)tmp) % 128); - } - - /* setup file access template with parallel IO access. */ - if (opt_split_vfd){ - hid_t mpio_pl; - - mpio_pl = H5Pcreate (H5P_FILE_ACCESS); - VRFY((acc_tpl >= 0), "", H5FATAL); - ret = H5Pset_fapl_mpio(mpio_pl, MPI_COMM_WORLD, MPI_INFO_NULL); - VRFY((ret >= 0), "", H5FATAL); - - /* set optional allocation alignment */ - if (opt_alignment*opt_threshold != 1){ - ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment ); - VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL); - } - - /* setup file access template */ - acc_tpl = H5Pcreate (H5P_FILE_ACCESS); - VRFY((acc_tpl >= 0), "", H5FATAL); - ret = H5Pset_fapl_split(acc_tpl, meta_ext, mpio_pl, raw_ext, mpio_pl); - VRFY((ret >= 0), "H5Pset_fapl_split succeeded", H5FATAL); - ret = H5Pclose(mpio_pl); - VRFY((ret >= 0), "H5Pclose mpio_pl succeeded", H5FATAL); - }else{ - /* setup file access template */ - acc_tpl = H5Pcreate (H5P_FILE_ACCESS); - VRFY((acc_tpl >= 0), "", H5FATAL); - ret = H5Pset_fapl_mpio(acc_tpl, MPI_COMM_WORLD, MPI_INFO_NULL); - VRFY((ret >= 0), "", H5FATAL); - - /* set optional allocation alignment */ - if (opt_alignment*opt_threshold != 1){ - ret = H5Pset_alignment(acc_tpl, opt_threshold, opt_alignment ); - VRFY((ret >= 0), "H5Pset_alignment succeeded", !H5FATAL); - } - } - - h5_fixname_no_suffix(FILENAME[0], acc_tpl, filename, sizeof filename); - - /* create the parallel file */ - fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl); - VRFY((fid >= 0), "H5Fcreate succeeded", H5FATAL); - - /* define a contiquous dataset of opt_iter*nprocs*opt_block chars */ - dims[0] = opt_iter * nprocs * opt_block; - sid = H5Screate_simple(RANK, dims, NULL); - VRFY((sid >= 0), "H5Screate_simple succeeded", H5FATAL); - dataset = H5Dcreate2(fid, "Dataset1", H5T_NATIVE_CHAR, sid, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - VRFY((dataset >= 0), "H5Dcreate2 succeeded", H5FATAL); - - /* create the memory dataspace and the file dataspace */ - dims[0] = opt_block; - mem_dataspace = H5Screate_simple(RANK, dims, NULL); - VRFY((mem_dataspace >= 0), "", H5FATAL); - file_dataspace = H5Dget_space(dataset); - VRFY((file_dataspace >= 0), "H5Dget_space succeeded", H5FATAL); - - /* now each process writes a block of opt_block chars in round robbin - * fashion until the whole dataset is covered. - */ - for(j=0; j < opt_iter; j++) { - /* setup a file dataspace selection */ - start[0] = (j*iter_jump)+(mynod*opt_block); - stride[0] = block[0] = opt_block; - count[0]= 1; - ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); - VRFY((ret >= 0), "H5Sset_hyperslab succeeded", H5FATAL); - - if (opt_correct) /* fill in buffer for iteration */ { - for (i=mynod+j, check=buf; i= 0), "H5Dwrite dataset1 succeeded", !H5FATAL); - - /* discover the ending time of the operation */ - etim = MPI_Wtime(); - - write_tim += (etim - stim); - - /* we are done with this "write" iteration */ - } - - /* close dataset and file */ - ret=H5Dclose(dataset); - VRFY((ret >= 0), "H5Dclose succeeded", H5FATAL); - ret=H5Fclose(fid); - VRFY((ret >= 0), "H5Fclose succeeded", H5FATAL); - - - - /* wait for everyone to synchronize at this point */ - MPI_Barrier(MPI_COMM_WORLD); - - /* reopen the file for reading */ - fid=H5Fopen(filename,H5F_ACC_RDONLY,acc_tpl); - VRFY((fid >= 0), "", H5FATAL); - - /* open the dataset */ - dataset = H5Dopen2(fid, "Dataset1", H5P_DEFAULT); - VRFY((dataset >= 0), "H5Dopen succeeded", H5FATAL); - - /* we can re-use the same mem_dataspace and file_dataspace - * the H5Dwrite used since the dimension size is the same. - */ - - /* we are going to repeat the read the same pattern the write used */ - for (j=0; j < opt_iter; j++) { - /* setup a file dataspace selection */ - start[0] = (j*iter_jump)+(mynod*opt_block); - stride[0] = block[0] = opt_block; - count[0]= 1; - ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); - VRFY((ret >= 0), "H5Sset_hyperslab succeeded", H5FATAL); - /* seek to the appropriate spot give the current iteration and - * rank within the MPI processes */ - - /* discover the start time */ - MPI_Barrier(MPI_COMM_WORLD); - stim = MPI_Wtime(); - - /* read in the file data */ - if (!opt_correct){ - ret = H5Dread(dataset, H5T_NATIVE_CHAR, mem_dataspace, file_dataspace, H5P_DEFAULT, buf); - } - else{ - ret = H5Dread(dataset, H5T_NATIVE_CHAR, mem_dataspace, file_dataspace, H5P_DEFAULT, buf2); - } - myerrno = errno; - - /* discover the end time */ - etim = MPI_Wtime(); - read_tim += (etim - stim); - VRFY((ret >= 0), "H5Dwrite dataset1 succeeded", !H5FATAL); - - - if (ret < 0) fprintf(stderr, "node %d, read error, loc = %Ld: %s\n", - mynod, mynod*opt_block, strerror(myerrno)); - - /* if the user wanted to check correctness, compare the write - * buffer to the read buffer */ - if (opt_correct && memcmp(buf, buf2, opt_block)) { - fprintf(stderr, "node %d, correctness test failed\n", mynod); - my_correct = 0; - MPI_Allreduce(&my_correct, &correct, 1, MPI_INT, MPI_MIN, - MPI_COMM_WORLD); - } - - /* we are done with this read iteration */ - } - - /* close dataset and file */ - ret=H5Dclose(dataset); - VRFY((ret >= 0), "H5Dclose succeeded", H5FATAL); - ret=H5Fclose(fid); - VRFY((ret >= 0), "H5Fclose succeeded", H5FATAL); - ret=H5Pclose(acc_tpl); - VRFY((ret >= 0), "H5Pclose succeeded", H5FATAL); - - /* compute the read and write times */ - MPI_Allreduce(&read_tim, &max_read_tim, 1, MPI_DOUBLE, MPI_MAX, - MPI_COMM_WORLD); - MPI_Allreduce(&read_tim, &min_read_tim, 1, MPI_DOUBLE, MPI_MIN, - MPI_COMM_WORLD); - MPI_Allreduce(&read_tim, &ave_read_tim, 1, MPI_DOUBLE, MPI_SUM, - MPI_COMM_WORLD); - - /* calculate the average from the sum */ - ave_read_tim = ave_read_tim / nprocs; - - MPI_Allreduce(&write_tim, &max_write_tim, 1, MPI_DOUBLE, MPI_MAX, - MPI_COMM_WORLD); - MPI_Allreduce(&write_tim, &min_write_tim, 1, MPI_DOUBLE, MPI_MIN, - MPI_COMM_WORLD); - MPI_Allreduce(&write_tim, &ave_write_tim, 1, MPI_DOUBLE, MPI_SUM, - MPI_COMM_WORLD); - - /* calculate the average from the sum */ - ave_write_tim = ave_write_tim / nprocs; - - /* print out the results on one node */ - if (mynod == 0) { - read_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_read_tim*1000000.0); - write_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_write_tim*1000000.0); - - printf("nr_procs = %d, nr_iter = %d, blk_sz = %ld\n", nprocs, - opt_iter, (long)opt_block); - - printf("# total_size = %ld\n", (long)(opt_block*nprocs*opt_iter)); - - printf("# Write: min_time = %f, max_time = %f, mean_time = %f\n", - min_write_tim, max_write_tim, ave_write_tim); - printf("# Read: min_time = %f, max_time = %f, mean_time = %f\n", - min_read_tim, max_read_tim, ave_read_tim); - - printf("Write bandwidth = %f Mbytes/sec\n", write_bw); - printf("Read bandwidth = %f Mbytes/sec\n", read_bw); - - if (opt_correct) { - printf("Correctness test %s.\n", correct ? "passed" : "failed"); - } - } - - -die_jar_jar_die: - -#if H5_HAVE_SETENV -/* no setenv or unsetenv */ - /* clear the environment variable if it was set earlier */ - if (opt_pvfstab_set){ - unsetenv("PVFSTAB_FILE"); - } -#endif - - free(tmp); - if (opt_correct) free(tmp2); - - MPI_Finalize(); - - return(0); -} - -static int -parse_args(int argc, char **argv) -{ - int c; - - while ((c = getopt(argc, argv, "s:b:i:f:p:a:2:c")) != EOF) { - switch (c) { - case 's': /* stripe */ - opt_stripe = atoi(optarg); - break; - case 'b': /* block size */ - opt_block = atoi(optarg); - break; - case 'i': /* iterations */ - opt_iter = atoi(optarg); - break; - case 'f': /* filename */ - strncpy(opt_file, optarg, 255); - FILENAME[0] = opt_file; - break; - case 'p': /* pvfstab file */ - strncpy(opt_pvfstab, optarg, 255); - opt_pvfstab_set = 1; - break; - case 'a': /* aligned allocation. - * syntax: -a/ - * e.g., -a4096/512 allocate at 4096 bytes - * boundary if request size >= 512. - */ - {char *p; - opt_alignment = atoi(optarg); - if (p=(char*)strchr(optarg, '/')) - opt_threshold = atoi(p+1); - } - HDfprintf(stdout, - "alignment/threshold=%Hu/%Hu\n", - opt_alignment, opt_threshold); - break; - case '2': /* use 2-files, i.e., split file driver */ - opt_split_vfd=1; - /* get meta and raw file extension. */ - /* syntax is , */ - meta_ext = raw_ext = optarg; - while (*raw_ext != '\0'){ - if (*raw_ext == ','){ - *raw_ext = '\0'; - raw_ext++; - break; - } - raw_ext++; - } - printf("split-file-vfd used: %s,%s\n", - meta_ext, raw_ext); - break; - case 'c': /* correctness */ - opt_correct = 1; - break; - case '?': /* unknown */ - default: - break; - } - } - - return(0); -} - -/* - * Local variables: - * c-indent-level: 3 - * c-basic-offset: 3 - * tab-width: 3 - * End: - */ - -#else /* H5_HAVE_PARALLEL */ -/* dummy program since H5_HAVE_PARALLEL is not configured in */ -int -main(int UNUSED argc, char UNUSED **argv) -{ - printf("No parallel performance because parallel is not configured in\n"); - return(0); -} -#endif /* H5_HAVE_PARALLEL */ - diff --git a/perform/perf_meta.c b/perform/perf_meta.c deleted file mode 100644 index b52871e..0000000 --- a/perform/perf_meta.c +++ /dev/null @@ -1,850 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Programmer: Raymond Lu - * Friday, Oct 3, 2004 - * - * Purpose: Tests performance of metadata - */ - -#include "h5test.h" - -#ifdef H5_HAVE_PARALLEL -#define MAINPROCESS (!mpi_rank) /* define process 0 as main process */ -#endif /*H5_HAVE_PARALLEL*/ - -/* File_Access_type bits */ -#define FACC_DEFAULT 0x0 /* serial as default */ -#define FACC_MPIO 0x1 /* MPIO */ - -/* Which test to run */ -int RUN_TEST = 0x0; /* all tests as default */ -int TEST_1 = 0x1; /* Test 1 */ -int TEST_2 = 0x2; /* Test 2 */ -int TEST_3 = 0x4; /* Test 3 */ - - -const char *FILENAME[] = { - "meta_perf_1", - "meta_perf_2", - "meta_perf_3", - NULL -}; - -/* Default values for performance. Can be changed through command line options */ -int NUM_DSETS = 16; -int NUM_ATTRS = 8; -int BATCH_ATTRS = 2; -hbool_t flush_dset = FALSE; -hbool_t flush_attr = FALSE; -int nerrors = 0; /* errors count */ -hid_t fapl; - -/* Data space IDs */ -hid_t space; -hid_t small_space; - -/* Performance data */ -typedef struct p_time { - double total; - double avg; - double max; - double min; - double start; - char func[32]; -} p_time; - -/*Test file access type for parallel. MPIO as default */ -int facc_type = FACC_DEFAULT; - -double retrieve_time(void); -void perf(p_time *perf_t, double start_t, double end_t); -void print_perf(p_time, p_time, p_time); - - -/*------------------------------------------------------------------------- - * Function: parse_options - * - Purpose: Parse command line options - * - * Programmer: Raymond Lu - * Friday, Oct 3, 2003 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static int -parse_options(int argc, char **argv) -{ - int t; - - /* Use default values */ - if(argc==1) - return(0); - - while (--argc){ - if (**(++argv) != '-'){ - break; - }else{ - switch(*(*argv+1)){ - case 'h': /* Help page */ - return(1); - - case 'd': /* Number of datasets */ - NUM_DSETS = atoi((*argv+1)+1); - if (NUM_DSETS < 0){ - nerrors++; - return(1); - } - break; - - case 'a': /* Number of attributes per dataset */ - NUM_ATTRS = atoi((*argv+1)+1); - if (NUM_ATTRS < 0){ - nerrors++; - return(1); - } - break; - - case 'n': /* Number of attributes to be created in batch */ - BATCH_ATTRS = atoi((*argv+1)+1); - if (BATCH_ATTRS < 0){ - nerrors++; - return(1); - } - break; - - case 'm': /* Use the MPI-IO driver */ - facc_type = FACC_MPIO; - break; - - case 'f': /* Call H5Fflush for each dataset or attribute */ - if(!strcmp("a", (*argv+2))) - flush_attr = TRUE; - else if(!strcmp("d", (*argv+2))) - flush_dset = TRUE; - else { - nerrors++; - return(1); - } - break; - - case 't': /* Which test to run */ - t = atoi((*argv+1)+1); - if (t < 1 || t > 3){ - nerrors++; - return(1); - } - if(t == 1) - RUN_TEST |= TEST_1; - else if(t == 2) - RUN_TEST |= TEST_2; - else - RUN_TEST |= TEST_3; - - break; - - default: nerrors++; - return(1); - } - } - } /*while*/ - - /* Check valid values */ -#ifndef H5_HAVE_PARALLEL - if(facc_type == FACC_MPIO) - { - nerrors++; - return(1); - } -#endif /*H5_HAVE_PARALLEL*/ - - if(NUM_ATTRS && !BATCH_ATTRS) - NUM_ATTRS = 0; - - if(!NUM_ATTRS && BATCH_ATTRS) - BATCH_ATTRS = 0; - - if(!NUM_DSETS) { - nerrors++; - return(1); - } - - if(NUM_ATTRS && BATCH_ATTRS) { - if(BATCH_ATTRS > NUM_ATTRS || NUM_ATTRS % BATCH_ATTRS) { - nerrors++; - return(1); - } - } - - return(0); -} - - -/*------------------------------------------------------------------------- - * Function: usage - * - Purpose: Prints help page - * - * Programmer: Raymond Lu - * Friday, Oct 3, 2003 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -usage(void) -{ - printf("Usage: perf_meta [-h] [-m] [-d]" - "[-a]\n" - "\t[-n] [-f