From 50c9a237255f5e1917e564e9f1f0d2bc95f3ac04 Mon Sep 17 00:00:00 2001 From: Pedro Vicente Nunes Date: Tue, 25 Apr 2006 13:19:40 -0500 Subject: [svn-r12297] Purpose: new feature Description: added support for the printout of dataset region references differences added a new test for this merged the h5diff generator of test files into a single file Solution: Platforms tested: linux 32, 64 solaris Misc. update: --- MANIFEST | 8 +- tools/h5diff/Makefile.am | 5 +- tools/h5diff/Makefile.in | 38 +- tools/h5diff/h5diffgentest.c | 2461 +++++++++++++++++++++++++++++++++++++++ tools/h5diff/testh5diff.h | 53 - tools/h5diff/testh5diff.sh | 14 +- tools/h5diff/testh5diff_attr.c | 1088 ----------------- tools/h5diff/testh5diff_basic.c | 515 -------- tools/h5diff/testh5diff_dset.c | 665 ----------- tools/h5diff/testh5diff_main.c | 36 - tools/h5diff/testh5diff_util.c | 99 -- tools/lib/h5diff_array.c | 225 +++- tools/lib/h5diff_dset.c | 202 ++-- tools/testfiles/file7.h5 | Bin 19104 -> 20768 bytes tools/testfiles/file8.h5 | Bin 19104 -> 20768 bytes tools/testfiles/h5diff_80.txt | 14 + 16 files changed, 2777 insertions(+), 2646 deletions(-) create mode 100644 tools/h5diff/h5diffgentest.c delete mode 100644 tools/h5diff/testh5diff.h delete mode 100644 tools/h5diff/testh5diff_attr.c delete mode 100644 tools/h5diff/testh5diff_basic.c delete mode 100644 tools/h5diff/testh5diff_dset.c delete mode 100644 tools/h5diff/testh5diff_main.c delete mode 100644 tools/h5diff/testh5diff_util.c diff --git a/MANIFEST b/MANIFEST index b92ff07..0abd403 100644 --- a/MANIFEST +++ b/MANIFEST @@ -812,12 +812,7 @@ ./tools/h5diff/h5diff_common.h ./tools/h5diff/h5diff_main.c ./tools/h5diff/ph5diff_main.c -./tools/h5diff/testh5diff_attr.c -./tools/h5diff/testh5diff_basic.c -./tools/h5diff/testh5diff_dset.c -./tools/h5diff/testh5diff_main.c -./tools/h5diff/testh5diff_util.c -./tools/h5diff/testh5diff.h +./tools/h5diff/h5diffgentest.c ./tools/h5diff/testh5diff.sh ./tools/h5diff/testph5diff.sh @@ -1186,6 +1181,7 @@ ./tools/testfiles/h5diff_55.txt ./tools/testfiles/h5diff_56.txt ./tools/testfiles/h5diff_57.txt +./tools/testfiles/h5diff_58.txt ./tools/testfiles/h5diff_600.txt ./tools/testfiles/h5diff_601.txt ./tools/testfiles/h5diff_602.txt diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am index aa08864..0243f92 100644 --- a/tools/h5diff/Makefile.am +++ b/tools/h5diff/Makefile.am @@ -33,7 +33,7 @@ endif bin_PROGRAMS=h5diff $(H5PDIFF) # Test programs and scripts -TEST_PROG=h5difftst +TEST_PROG=h5diffgentest TEST_SCRIPT=$(srcdir)/testh5diff.sh check_PROGRAMS=$(TEST_PROG) @@ -44,8 +44,7 @@ SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh # Source files for the program h5diff_SOURCES=h5diff_main.c h5diff_common.c ph5diff_SOURCES=ph5diff_main.c h5diff_common.c -h5difftst_SOURCES=testh5diff_main.c testh5diff_attr.c \ - testh5diff_basic.c testh5diff_dset.c testh5diff_util.c +h5diffgentest_SOURCES=h5diffgentest.c # Programs depend on the main HDF5 library and tools library LDADD=$(LIBH5TOOLS) $(LIBHDF5) diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 812180c..f8e4c6f 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -30,7 +30,7 @@ # HDF5 Library Makefile(.in) # -SOURCES = $(h5diff_SOURCES) $(h5difftst_SOURCES) $(ph5diff_SOURCES) +SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) $(ph5diff_SOURCES) srcdir = @srcdir@ top_srcdir = @top_srcdir@ @@ -70,7 +70,7 @@ CONFIG_CLEAN_FILES = @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT) am__installdirs = "$(DESTDIR)$(bindir)" binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) -am__EXEEXT_2 = h5difftst$(EXEEXT) +am__EXEEXT_2 = h5diffgentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) am_h5diff_OBJECTS = h5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) h5diff_OBJECTS = $(am_h5diff_OBJECTS) @@ -78,12 +78,11 @@ h5diff_LDADD = $(LDADD) am__DEPENDENCIES_1 = $(top_builddir)/tools/lib/libh5tools.la am__DEPENDENCIES_2 = $(top_builddir)/src/libhdf5.la h5diff_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) -am_h5difftst_OBJECTS = testh5diff_main.$(OBJEXT) \ - testh5diff_attr.$(OBJEXT) testh5diff_basic.$(OBJEXT) \ - testh5diff_dset.$(OBJEXT) testh5diff_util.$(OBJEXT) -h5difftst_OBJECTS = $(am_h5difftst_OBJECTS) -h5difftst_LDADD = $(LDADD) -h5difftst_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) +am_h5diffgentest_OBJECTS = h5diffgentest.$(OBJEXT) +h5diffgentest_OBJECTS = $(am_h5diffgentest_OBJECTS) +h5diffgentest_LDADD = $(LDADD) +h5diffgentest_DEPENDENCIES = $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_2) am_ph5diff_OBJECTS = ph5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) ph5diff_OBJECTS = $(am_ph5diff_OBJECTS) ph5diff_LDADD = $(LDADD) @@ -99,8 +98,9 @@ LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \ CCLD = $(CC) LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -SOURCES = $(h5diff_SOURCES) $(h5difftst_SOURCES) $(ph5diff_SOURCES) -DIST_SOURCES = $(h5diff_SOURCES) $(h5difftst_SOURCES) \ +SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ + $(ph5diff_SOURCES) +DIST_SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) ETAGS = etags CTAGS = ctags @@ -359,7 +359,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 expect_sorted \ @BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh # Test programs and scripts -TEST_PROG = h5difftst +TEST_PROG = h5diffgentest TEST_SCRIPT = $(srcdir)/testh5diff.sh check_SCRIPTS = $(TEST_SCRIPT) $(TEST_SCRIPT_PARA) # The parallel test script testph5diff.sh actually depends on testh5diff.sh. @@ -368,9 +368,7 @@ SCRIPT_DEPEND = h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh # Source files for the program h5diff_SOURCES = h5diff_main.c h5diff_common.c ph5diff_SOURCES = ph5diff_main.c h5diff_common.c -h5difftst_SOURCES = testh5diff_main.c testh5diff_attr.c \ - testh5diff_basic.c testh5diff_dset.c testh5diff_util.c - +h5diffgentest_SOURCES = h5diffgentest.c # Programs depend on the main HDF5 library and tools library LDADD = $(LIBH5TOOLS) $(LIBHDF5) @@ -462,9 +460,9 @@ clean-checkPROGRAMS: h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) @rm -f h5diff$(EXEEXT) $(LINK) $(h5diff_LDFLAGS) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS) -h5difftst$(EXEEXT): $(h5difftst_OBJECTS) $(h5difftst_DEPENDENCIES) - @rm -f h5difftst$(EXEEXT) - $(LINK) $(h5difftst_LDFLAGS) $(h5difftst_OBJECTS) $(h5difftst_LDADD) $(LIBS) +h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) + @rm -f h5diffgentest$(EXEEXT) + $(LINK) $(h5diffgentest_LDFLAGS) $(h5diffgentest_OBJECTS) $(h5diffgentest_LDADD) $(LIBS) ph5diff$(EXEEXT): $(ph5diff_OBJECTS) $(ph5diff_DEPENDENCIES) @rm -f ph5diff$(EXEEXT) $(LINK) $(ph5diff_LDFLAGS) $(ph5diff_OBJECTS) $(ph5diff_LDADD) $(LIBS) @@ -477,12 +475,8 @@ distclean-compile: @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_common.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diff_main.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5diffgentest.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ph5diff_main.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_attr.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_basic.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_dset.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_main.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5diff_util.Po@am__quote@ .c.o: @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \ diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c new file mode 100644 index 0000000..c99c8df --- /dev/null +++ b/tools/h5diff/h5diffgentest.c @@ -0,0 +1,2461 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include +#include +#include "hdf5.h" +#include "H5private.h" + +/*------------------------------------------------------------------------- + * Program: h5diffgentest + * + * Purpose: generate files for h5diff testting + * + * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ + + +#define UIMAX 4294967295u /*Maximum value for a variable of type unsigned int */ +#define STR_SIZE 3 +#define FILE1 "file1.h5" +#define FILE2 "file2.h5" +#define FILE3 "file3.h5" +#define FILE4 "file4.h5" +#define FILE5 "file5.h5" +#define FILE6 "file6.h5" +#define FILE7 "file7.h5" +#define FILE8 "file8.h5" + + +/*------------------------------------------------------------------------- + * Function: write_attr + * + * Purpose: utility function to write an attribute in LOC_ID + * + *------------------------------------------------------------------------- + */ +static +int write_attr(hid_t loc_id, + int rank, + hsize_t *dims, + const char *attr_name, + hid_t tid, + void *buf) +{ + hid_t aid; + hid_t sid; + herr_t status; + + /* Create a buf space */ + sid = H5Screate_simple(rank,dims,NULL); + + /* Create the attribute */ + aid = H5Acreate(loc_id,attr_name,tid,sid,H5P_DEFAULT); + + /* Write the buf */ + if ( buf ) + status = H5Awrite(aid,tid,buf); + + /* Close */ + status = H5Aclose(aid); + status = H5Sclose(sid); + return status; +} + +/*------------------------------------------------------------------------- + * Function: write_dset + * + * Purpose: utility function to create and write a dataset in LOC_ID + * + *------------------------------------------------------------------------- + */ +static +int write_dset( hid_t loc_id, + int rank, + hsize_t *dims, + const char *dset_name, + hid_t tid, + void *buf ) +{ + hid_t did; + hid_t sid; + herr_t status; + + /* Create a buf space */ + sid = H5Screate_simple(rank,dims,NULL); + + /* Create a dataset */ + did = H5Dcreate(loc_id,dset_name,tid,sid,H5P_DEFAULT); + + /* Write the buf */ + if ( buf ) + status = H5Dwrite(did,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf); + + /* Close */ + status = H5Dclose(did); + status = H5Sclose(sid); + + return status; +} + + + +/* + +# ############################################################################## +# # Common usage +# ############################################################################## + + +# 1.0 + -h + +# 1.1 + file1.h5 file2.h5 g1/dset1 g1/dset2 + +# 1.2 + file1.h5 file2.h5 -n 2 g1/dset1 g1/dset2 + +# 1.3 + file1.h5 file2.h5 -d 5 g1/dset3 g1/dset4 + +# 1.4 + file1.h5 file2.h5 -p 0.05 g1/dset3 g1/dset4 + +# 1.5 + file1.h5 file2.h5 -r g1/dset1 g1/dset2 + +# 1.6 + file1.h5 file2.h5 + +# ############################################################################## +# # basic types +# ############################################################################## + +# 2.0 + file3.h5 file3.h5 dset group + +# 2.1 + file3.h5 file3.h5 dset link + +# 2.2 + file3.h5 file3.h5 dset type + +# 2.3 + file3.h5 file3.h5 group group + +# 2.4 + file3.h5 file3.h5 type type + +# 2.5 + file3.h5 file3.h5 link link + + +# ############################################################################## +# # Dimensions +# ############################################################################## + +# 4.0 + file5.h5 file5.h5 dset1 dset2 + +# 4.1 + file5.h5 file5.h5 dset3 dset4 + +# 4.2 + file5.h5 file5.h5 dset5 dset6 + + +# ############################################################################## +# # Dataset types +# ############################################################################## + +# 5.0 + file6.h5 file6.h5 dset0a dset0b + +# 5.1 + file6.h5 file6.h5 dset1a dset1b + +# 5.2 + file6.h5 file6.h5 dset2a dset2b + +# 5.3 + file6.h5 file6.h5 dset3a dset4b + +# 5.4 + file6.h5 file6.h5 dset4a dset4b + +# 5.5 + file6.h5 file6.h5 dset5a dset5b + +# 5.6 + file6.h5 file6.h5 dset6a dset6b + +# 5.7 + file6.h5 file6.h5 dset7a dset7b + +# 5.8 + file6.h5 file6.h5 dset8a dset8b + +# ############################################################################## +# # Error messages +# ############################################################################## + + +# 6.0: Check if the command line number of arguments is less than 3 + h5diff_test1.h5 + +# 6.1: Check for invalid options + h5diff_test1.h5 h5diff_test2.h5 -x + +# ############################################################################## +# # -d +# ############################################################################## + +# 6.2: no value + file1.h5 file2.h5 -d g1/dset3 g1/dset4 + +# 6.3: negative value + file1.h5 file2.h5 -d -4 g1/dset3 g1/dset4 + +# 6.4: zero + file1.h5 file2.h5 -d 0 g1/dset3 g1/dset4 + +# 6.5: non number + file1.h5 file2.h5 -d u g1/dset3 g1/dset4 + +# 6.6: hexadecimal + file1.h5 file2.h5 -d 0x1 g1/dset3 g1/dset4 + +# 6.7: string + file1.h5 file2.h5 -d "1" g1/dset3 g1/dset4 + +# 6.8: repeated option + file1.h5 file2.h5 -d 1 -d 2 g1/dset3 g1/dset4 + +# 6.9: number larger than biggest difference + file1.h5 file2.h5 -d 200 g1/dset3 g1/dset4 + +# 6.10: number smaller than smallest difference + file1.h5 file2.h5 -d 1 g1/dset3 g1/dset4 + + +# ############################################################################## +# # -p +# ############################################################################## + + +# 6.11: no value + file1.h5 file2.h5 -p g1/dset3 g1/dset4 + +# 6.12: negative value + file1.h5 file2.h5 -p -4 g1/dset3 g1/dset4 + +# 6.13: zero + file1.h5 file2.h5 -p 0 g1/dset3 g1/dset4 + +# 6.14: non number + file1.h5 file2.h5 -p u g1/dset3 g1/dset4 + +# 6.15: hexadecimal + file1.h5 file2.h5 -p 0x1 g1/dset3 g1/dset4 + +# 6.16: string + file1.h5 file2.h5 -p "0.21" g1/dset3 g1/dset4 + +# 6.17: repeated option + file1.h5 file2.h5 -p 0.21 -p 0.22 g1/dset3 g1/dset4 + +# 6.18: number larger than biggest difference + file1.h5 file2.h5 -p 2 g1/dset3 g1/dset4 + +# 6.19: number smaller than smallest difference + file1.h5 file2.h5 -p 0.005 g1/dset3 g1/dset4 + + + +# ############################################################################## +# # -n +# ############################################################################## + + +# 6.20: no value + file1.h5 file2.h5 -n g1/dset3 g1/dset4 + +# 6.21: negative value + file1.h5 file2.h5 -n -4 g1/dset3 g1/dset4 + +# 6.22: zero + file1.h5 file2.h5 -n 0 g1/dset3 g1/dset4 + +# 6.23: non number + file1.h5 file2.h5 -n u g1/dset3 g1/dset4 + +# 6.24: hexadecimal + file1.h5 file2.h5 -n 0x1 g1/dset3 g1/dset4 + +# 6.25: string + file1.h5 file2.h5 -n "2" g1/dset3 g1/dset4 + +# 6.26: repeated option + file1.h5 file2.h5 -n 2 -n 3 g1/dset3 g1/dset4 + +# 6.27: number larger than biggest difference + file1.h5 file2.h5 -n 200 g1/dset3 g1/dset4 + +# 6.28: number smaller than smallest difference + file1.h5 file2.h5 -n 1 g1/dset3 g1/dset4 + +# ############################################################################## +# # non valid files +# ############################################################################## + + file1.h6 file2.h6 + +*/ + + +/*------------------------------------------------------------------------- + * Function: gen_datareg + * + * Purpose: generate a dataset region and its reference + * + * Date: April 19, 2006 + * + *------------------------------------------------------------------------- + */ + +static +void gen_datareg(hid_t fid, + int make_diffs /* flag to modify data buffers */) +{ + /* data dataset */ + hid_t did1; /* dataset ID */ + hid_t sid1; /* dataspace ID */ + hsize_t dims1[2] = {10,10};/* dimensions */ + int *buf; /* dataset buffer */ + /* reference dataset */ + hid_t did2; /* dataset ID */ + hid_t sid2; /* dataspace ID */ + hsize_t dims2[] = {2}; /* 2 references */ + hdset_reg_ref_t *rbuf; /* buffer for write the references */ + hsize_t start[10]; /* starting location of hyperslab */ + hsize_t count[10]; /* element count of hyperslab */ + hsize_t coord[5][2]; /* coordinates for point selection */ + herr_t status; + int i; + + /* allocate the buffer for write the references */ + rbuf=calloc(2,sizeof(hdset_reg_ref_t)); + + /* allocate the buffer for write the data dataset */ + buf=malloc(10*10*sizeof(int)); + + for (i=0; i<10*10; i++) + { + buf[i]=i; + } + + /* create the data dataset */ + sid1 = H5Screate_simple(2,dims1,NULL); + did1 = H5Dcreate(fid,"dsetref",H5T_NATIVE_INT,sid1,H5P_DEFAULT); + status = H5Dwrite(did1,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf); + + /* create the reference dataset */ + sid2 = H5Screate_simple(1,dims2,NULL); + did2 = H5Dcreate(fid,"refreg",H5T_STD_REF_DSETREG,sid2,H5P_DEFAULT); + + /* create the references */ + /* select hyperslab for first reference */ + + start[0]=2; start[1]=2; + count[0]=6; count[1]=6; + if (make_diffs) + { + start[0]=0; start[1]=0; + count[0]=3; count[1]=3; + } + + status = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,NULL,count,NULL); + H5Sget_select_npoints(sid1); + + /* store first dataset region */ + status = H5Rcreate(&rbuf[0],fid,"dsetref",H5R_DATASET_REGION,sid1); + + /* select sequence of five points for second reference */ + coord[0][0]=6; coord[0][1]=9; + coord[1][0]=2; coord[1][1]=2; + coord[2][0]=8; coord[2][1]=4; + coord[3][0]=1; coord[3][1]=6; + coord[4][0]=2; coord[4][1]=8; + if (make_diffs) + { + coord[0][0]=5; coord[0][1]=8; + coord[1][0]=3; coord[1][1]=3; + coord[2][0]=7; coord[2][1]=5; + } + H5Sselect_elements(sid1,H5S_SELECT_SET,5,(const hsize_t **)coord); + H5Sget_select_npoints(sid1); + + /* store second dataset region */ + H5Rcreate(&rbuf[1],fid,"dsetref",H5R_DATASET_REGION,sid1); + + /* write */ + status = H5Dwrite(did2,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf); + + /* close, free memory buffers */ + status = H5Dclose(did1); + status = H5Sclose(sid1); + status = H5Dclose(did2); + status = H5Sclose(sid2); + free(rbuf); + free(buf); + +} + +/*------------------------------------------------------------------------- + * Function: write_dset_in + * + * Purpose: write datasets in LOC_ID + * + *------------------------------------------------------------------------- + */ +static +void write_dset_in(hid_t loc_id, + const char* dset_name, /* for saving reference to dataset*/ + hid_t fid, + int make_diffs /* flag to modify data buffers */) +{ + /* Compound datatype */ + typedef struct s_t + { + char a; + double b; + } s_t; + + typedef enum + { + RED, + GREEN + } e_t; + + hid_t did; + hid_t sid; + hid_t tid; + hid_t dcpl; + herr_t status; + int val, i, j, k, n; + float f; + int fillvalue=2; + + /* create 1D attributes with dimension [2], 2 elements */ + hsize_t dims[1]={2}; + char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ + char buf2[2]= {1,2}; /* bitfield, opaque */ + s_t buf3[2]= {{1,2},{3,4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2]= {RED,GREEN}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1]={3}; /* array dimension */ + int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ + int buf7[2]= {1,2}; /* integer */ + float buf8[2]= {1,2}; /* float */ + + /* create 2D attributes with dimension [3][2], 6 elements */ + hsize_t dims2[2]={3,2}; + char buf12[6][STR_SIZE]= {"ab","cd","ef","gh","ij","kl"}; /* string */ + char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ + s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ + int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ + float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + + /* create 3D attributes with dimension [4][3][2], 24 elements */ + hsize_t dims3[3]={4,3,2}; + char buf13[24][STR_SIZE]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + +/*------------------------------------------------------------------------- + * 1D + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<2; j++) + { + buf1[i][j]='z'; + } + } + + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid,STR_SIZE); + write_dset(loc_id,1,dims,"string",tid,buf1); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + buf2[i]=buf2[1]=0; + } + + tid = H5Tcopy(H5T_STD_B8LE); + write_dset(loc_id,1,dims,"bitfield",tid,buf2); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf3[i].a=0; buf3[i].b=0; + } + } + + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_dset(loc_id,1,dims,"opaque",tid,buf2); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf45[i]=GREEN; + } + } + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_dset(loc_id,1,dims,"compound",tid,buf3); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1); + status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1); + write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); + } + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_DATASET_REGION dataset region reference) + *------------------------------------------------------------------------- + */ + + gen_datareg(fid,make_diffs); + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_dset(loc_id,1,dims,"enum",tid,buf45); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + + buf5[0].len = 1; + buf5[0].p = malloc( 1 * sizeof(int)); + ((int *)buf5[0].p)[0]=1; + buf5[1].len = 2; + buf5[1].p = malloc( 2 * sizeof(int)); + ((int *)buf5[1].p)[0]=2; + ((int *)buf5[1].p)[1]=3; + + if (make_diffs) + { + ((int *)buf5[0].p)[0]=0; + ((int *)buf5[1].p)[0]=0; + ((int *)buf5[1].p)[1]=0; + } + + sid = H5Screate_simple(1,dims,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + did = H5Dcreate(loc_id,"vlen",tid,sid,H5P_DEFAULT); + status = H5Dwrite(did,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf5); + assert(status>=0); + status = H5Dclose(did); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<3; j++) + { + buf6[i][j]=0; + } + } + + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_dset(loc_id,1,dims,"array",tid,buf6); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf7[i]=0; + buf8[i]=0; + } + } + + write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); + write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); + + +/*------------------------------------------------------------------------- + * 2D + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf12, 'z', sizeof buf12); + } + + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid,STR_SIZE); + write_dset(loc_id,2,dims2,"string2D",tid,buf12); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + + if (make_diffs) + { + memset(buf22,0,sizeof buf22); + } + + tid = H5Tcopy(H5T_STD_B8LE); + write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_dset(loc_id,2,dims2,"opaque2D",tid,buf22); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf32,0,sizeof buf32); + } + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_dset(loc_id,2,dims2,"compound2D",tid,buf32); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1); + } + } + write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); + } + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_dset(loc_id,2,dims2,"enum2D",tid,0); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + +/* Allocate and initialize VL dataset to write */ + n=0; + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + int l; + buf52[i][j].p = malloc((i + 1) * sizeof(int)); + buf52[i][j].len = i + 1; + for (l = 0; l < i + 1; l++) + if (make_diffs)((int *)buf52[i][j].p)[l] = 0; + else ((int *)buf52[i][j].p)[l] = n++; + } + } + + sid = H5Screate_simple(2,dims2,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + did = H5Dcreate(loc_id,"vlen2D",tid,sid,H5P_DEFAULT); + status = H5Dwrite(did,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf52); + assert(status>=0); + status = H5Dclose(did); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf62,0,sizeof buf62); + } + + + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_dset(loc_id,2,dims2,"array2D",tid,buf62); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER, write a fill value + *------------------------------------------------------------------------- + */ + + + if (make_diffs) + { + memset(buf72,0,sizeof buf72); + memset(buf82,0,sizeof buf82); + } + + + dcpl = H5Pcreate(H5P_DATASET_CREATE); + status = H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue); + sid = H5Screate_simple(2,dims2,NULL); + did = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,sid,dcpl); + status = H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72); + status = H5Pclose(dcpl); + status = H5Dclose(did); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_FLOAT + *------------------------------------------------------------------------- + */ + + write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); + + +/*------------------------------------------------------------------------- + * 3D + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf13,'z',sizeof buf13); + } + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid,STR_SIZE); + write_dset(loc_id,3,dims3,"string3D",tid,buf13); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + + n=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) buf23[i][j][k]=0; + else buf23[i][j][k]=n++; + } + } + } + + + tid = H5Tcopy(H5T_STD_B8LE); + write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_dset(loc_id,3,dims3,"opaque3D",tid,buf23); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + n=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf33[i][j][k].a=0; + buf33[i][j][k].b=0; + } + else { + buf33[i][j][k].a=n++; + buf33[i][j][k].b=n++; + } + } + } + } + + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_dset(loc_id,3,dims3,"compound3D",tid,buf33); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) + status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1); + } + } + write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); + } + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_dset(loc_id,3,dims3,"enum3D",tid,0); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n=0; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + int l; + buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); + buf53[i][j][k].len = i + 1; + for (l = 0; l < i + 1; l++) + if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; + else ((int *)buf53[i][j][k].p)[l] = n++; + } + } + } + + sid = H5Screate_simple(3,dims3,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + did = H5Dcreate(loc_id,"vlen3D",tid,sid,H5P_DEFAULT); + status = H5Dwrite(did,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf53); + assert(status>=0); + status = H5Dclose(did); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + + n=1; + for (i = 0; i < 24; i++) { + for (j = 0; j < (int)dimarray[0]; j++) { + if (make_diffs) buf63[i][j]=0; + else buf63[i][j]=n++; + } + } + + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_dset(loc_id,3,dims3,"array3D",tid,buf63); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n=1; f=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf73[i][j][k]=0; + buf83[i][j][k]=0; + } + else { + buf73[i][j][k]=n++; + buf83[i][j][k]=f++; + } + } + } + } + write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); + write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); +} + + + + +/*------------------------------------------------------------------------- + * Function: write_attr_in + * + * Purpose: write attributes in LOC_ID (dataset, group, named datatype) + * + *------------------------------------------------------------------------- + */ +static +void write_attr_in(hid_t loc_id, + const char* dset_name, /* for saving reference to dataset*/ + hid_t fid, + int make_diffs /* flag to modify data buffers */) +{ + /* Compound datatype */ + typedef struct s_t + { + char a; + double b; + } s_t; + + typedef enum + { + RED, + GREEN + } e_t; + + hid_t aid; + hid_t sid; + hid_t tid; + herr_t status; + int val, i, j, k, n; + float f; + + /* create 1D attributes with dimension [2], 2 elements */ + hsize_t dims[1]={2}; + char buf1[2][2]= {"ab","de"}; /* string */ + char buf2[2]= {1,2}; /* bitfield, opaque */ + s_t buf3[2]= {{1,2},{3,4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2]= {RED,RED}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1]={3}; /* array dimension */ + int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ + int buf7[2]= {1,2}; /* integer */ + float buf8[2]= {1,2}; /* float */ + + /* create 2D attributes with dimension [3][2], 6 elements */ + hsize_t dims2[2]={3,2}; + char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */ + char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ + s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + e_t buf452[3][2]; /* enum */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ + int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ + float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + + /* create 3D attributes with dimension [4][3][2], 24 elements */ + hsize_t dims3[3]={4,3,2}; + char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + e_t buf453[4][3][2]; /* enum */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + +/*------------------------------------------------------------------------- + * 1D attributes + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<2; j++) + { + buf1[i][j]='z'; + } + } + /* + buf1[2][2]= {"ab","de"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and + position string of string of difference + ------------------------------------------------------------ +[ 0 ] a z +[ 0 ] b z +[ 1 ] d z +[ 1 ] e z + */ + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, 2); + write_attr(loc_id,1,dims,"string",tid,buf1); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + buf2[i]=buf2[1]=0; + } + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and + position bitfield of bitfield of difference + position opaque of opaque of difference +------------------------------------------------------------ +[ 0 ] 1 0 1 +[ 1 ] 2 0 2 + */ + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id,1,dims,"bitfield",tid,buf2); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and + position opaque of opaque of difference + position opaque of opaque of difference +------------------------------------------------------------ +[ 0 ] 1 0 1 +[ 1 ] 2 0 2 +*/ + + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id,1,dims,"opaque",tid,buf2); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf3[i].a=0; buf3[i].b=0; + } + } + + /* + buf3[2]= {{1,2},{3,4}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and + position compound of compound of difference + ------------------------------------------------------------ + [ 0 ] 1 5 4 + [ 0 ] 2 5 3 + [ 1 ] 3 5 2 + [ 1 ] 4 5 1 + */ + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id,1,dims,"compound",tid,buf3); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1); + status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1); + write_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); + } + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf45[i]=GREEN; + } + } + /* + buf45[2]= {RED,RED}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and + position enum of enum of difference +------------------------------------------------------------ +[ 0 ] RED GREEN +[ 1 ] RED GREEN + */ + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id,1,dims,"enum",tid,buf45); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + + buf5[0].len = 1; + buf5[0].p = malloc( 1 * sizeof(int)); + ((int *)buf5[0].p)[0]=1; + buf5[1].len = 2; + buf5[1].p = malloc( 2 * sizeof(int)); + ((int *)buf5[1].p)[0]=2; + ((int *)buf5[1].p)[1]=3; + + if (make_diffs) + { + ((int *)buf5[0].p)[0]=0; + ((int *)buf5[1].p)[0]=0; + ((int *)buf5[1].p)[1]=0; + } + /* + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + position vlen of vlen of difference +------------------------------------------------------------ +[ 0 ] 1 0 1 +[ 1 ] 2 0 2 +[ 1 ] 3 0 3 + */ + + sid = H5Screate_simple(1,dims,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate(loc_id,"vlen",tid,sid,H5P_DEFAULT); + status = H5Awrite(aid,tid,buf5); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf5); + assert(status>=0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<3; j++) + { + buf6[i][j]=0; + } + } + /* + buf6[2][3]= {{1,2,3},{4,5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + Attribute: and +position array of array of difference +------------------------------------------------------------ +[ 0 ] 1 0 1 +[ 0 ] 2 0 2 +[ 0 ] 3 0 3 +[ 1 ] 4 0 4 +[ 1 ] 5 0 5 +[ 1 ] 6 0 6 + */ + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_attr(loc_id,1,dims,"array",tid,buf6); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf7[i]=0; + buf8[i]=0; + } + } + /* + buf7[2]= {1,2}; + buf8[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and + position integer of integer of difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + position float of float of difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + write_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); + write_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); + + +/*------------------------------------------------------------------------- + * 2D attributes + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + memset(buf12, 'z', sizeof buf12); + } + + /* + buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: and + position string2D of string2D of difference + ------------------------------------------------------------ +[ 0 0 ] a z +[ 0 0 ] b z +[ 0 1 ] c z +[ 0 1 ] d z +[ 1 0 ] e z +[ 1 0 ] f z +[ 1 1 ] g z +[ 1 1 ] h z +[ 2 0 ] i z +[ 2 0 ] j z +[ 2 1 ] k z +[ 2 1 ] l z + */ + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, 2); + write_attr(loc_id,2,dims2,"string2D",tid,buf12); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf22,0,sizeof buf22); + } + + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: and + position bitfield2D of bitfield2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 1 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 2 0 ] 5 0 5 +[ 2 1 ] 6 0 6 + */ + + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id,2,dims2,"bitfield2D",tid,buf22); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: and + position opaque2D of opaque2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 1 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 2 0 ] 5 0 5 +[ 2 1 ] 6 0 6 + */ + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id,2,dims2,"opaque2D",tid,buf22); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + memset(buf32,0,sizeof buf32); + } + + /* + buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: and + position opaque2D of opaque2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 1 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 2 0 ] 5 0 5 +[ 2 1 ] 6 0 6 + */ + + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id,2,dims2,"compound2D",tid,buf32); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1); + } + } + write_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); + } + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + for (i=0; i<3; i++) + for (j=0; j<2; j++) + { + if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; + } + +/* +Attribute: and +position enum2D of enum2D of difference +------------------------------------------------------------ +[ 0 0 ] RED GREEN +[ 0 1 ] RED GREEN +[ 1 0 ] RED GREEN +[ 1 1 ] RED GREEN +[ 2 0 ] RED GREEN +[ 2 1 ] RED GREEN +*/ + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id,2,dims2,"enum2D",tid,buf452); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n=0; + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + int l; + buf52[i][j].p = malloc((i + 1) * sizeof(int)); + buf52[i][j].len = i + 1; + for (l = 0; l < i + 1; l++) + if (make_diffs)((int *)buf52[i][j].p)[l] = 0; + else ((int *)buf52[i][j].p)[l] = n++; + } + } + + /* + position vlen2D of vlen2D of difference +------------------------------------------------------------ +[ 0 1 ] 1 0 1 +[ 1 0 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 1 1 ] 5 0 5 +[ 2 0 ] 6 0 6 +[ 2 0 ] 7 0 7 +[ 2 0 ] 8 0 8 +[ 2 1 ] 9 0 9 +[ 2 1 ] 10 0 10 +[ 2 1 ] 11 0 11 +*/ + + sid = H5Screate_simple(2,dims2,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate(loc_id,"vlen2D",tid,sid,H5P_DEFAULT); + status = H5Awrite(aid,tid,buf52); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf52); + assert(status>=0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf62,0,sizeof buf62); + } + /* + buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: and +Attribute: and +position array2D of array2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 0 ] 2 0 2 +[ 0 0 ] 3 0 3 +[ 0 1 ] 4 0 4 +[ 0 1 ] 5 0 5 +[ 0 1 ] 6 0 6 +[ 1 0 ] 7 0 7 +[ 1 0 ] 8 0 8 +[ 1 0 ] 9 0 9 +[ 1 1 ] 10 0 10 +[ 1 1 ] 11 0 11 +[ 1 1 ] 12 0 12 +[ 2 0 ] 13 0 13 +[ 2 0 ] 14 0 14 +[ 2 0 ] 15 0 15 +[ 2 1 ] 16 0 16 +[ 2 1 ] 17 0 17 +[ 2 1 ] 18 0 18 + */ + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_attr(loc_id,2,dims2,"array2D",tid,buf62); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf72,0,sizeof buf72); + memset(buf82,0,sizeof buf82); + } +/* +Attribute: and +position integer2D of integer2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 1 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 2 0 ] 5 0 5 +[ 2 1 ] 6 0 6 +6 differences found +Attribute: and +position float2D of float2D of difference +------------------------------------------------------------ +[ 0 0 ] 1 0 1 +[ 0 1 ] 2 0 2 +[ 1 0 ] 3 0 3 +[ 1 1 ] 4 0 4 +[ 2 0 ] 5 0 5 +[ 2 1 ] 6 0 6 +*/ + + write_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72); + write_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); + + +/*------------------------------------------------------------------------- + * 3D attributes + *------------------------------------------------------------------------- + */ + +/*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + memset(buf13,'z',sizeof buf13); + } + + /* + buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; + +Attribute: and +position string3D of string3D of difference +------------------------------------------------------------ +[ 0 0 0 ] a z +[ 0 0 0 ] b z +[ 0 0 1 ] c z +[ 0 0 1 ] d z +[ 0 1 0 ] e z +[ 0 1 0 ] f z +[ 0 1 1 ] g z +[ 0 1 1 ] h z +[ 0 2 0 ] i z +[ 0 2 0 ] j z +[ 0 2 1 ] k z +[ 0 2 1 ] l z +[ 1 0 0 ] m z +[ 1 0 0 ] n z +[ 1 0 1 ] p z +[ 1 0 1 ] q z +[ 1 1 0 ] r z +[ 1 1 0 ] s z +[ 1 1 1 ] t z +[ 1 1 1 ] u z +[ 1 2 0 ] v z +[ 1 2 0 ] w z +[ 1 2 1 ] x z +[ 2 0 0 ] A z +[ 2 0 0 ] B z +[ 2 0 1 ] C z +[ 2 0 1 ] D z +[ 2 1 0 ] E z +[ 2 1 0 ] F z +[ 2 1 1 ] G z +[ 2 1 1 ] H z +[ 2 2 0 ] I z +[ 2 2 0 ] J z +[ 2 2 1 ] K z +[ 2 2 1 ] L z +[ 3 0 0 ] M z +[ 3 0 0 ] N z +[ 3 0 1 ] P z +[ 3 0 1 ] Q z +[ 3 1 0 ] R z +[ 3 1 0 ] S z +[ 3 1 1 ] T z +[ 3 1 1 ] U z +[ 3 2 0 ] V z +[ 3 2 0 ] W z +[ 3 2 1 ] X z +[ 3 2 1 ] Z z + */ + + tid = H5Tcopy(H5T_C_S1); + status = H5Tset_size(tid, 2); + write_attr(loc_id,3,dims3,"string3D",tid,buf13); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + n=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) buf23[i][j][k]=0; + else buf23[i][j][k]=n++; + } + } + } + +/* +position bitfield3D of bitfield3D of difference +------------------------------------------------------------ +[ 0 0 0 ] 1 0 1 +[ 0 0 1 ] 2 0 2 +[ 0 1 0 ] 3 0 3 +[ 0 1 1 ] 4 0 4 +[ 0 2 0 ] 5 0 5 +[ 0 2 1 ] 6 0 6 +[ 1 0 0 ] 7 0 7 +[ 1 0 1 ] 8 0 8 +[ 1 1 0 ] 9 0 9 +[ 1 1 1 ] 10 0 10 +[ 1 2 0 ] 11 0 11 +[ 1 2 1 ] 12 0 12 +[ 2 0 0 ] 13 0 13 +[ 2 0 1 ] 14 0 14 +[ 2 1 0 ] 15 0 15 +[ 2 1 1 ] 16 0 16 +[ 2 2 0 ] 17 0 17 +[ 2 2 1 ] 18 0 18 +[ 3 0 0 ] 19 0 19 +[ 3 0 1 ] 20 0 20 +[ 3 1 0 ] 21 0 21 +[ 3 1 1 ] 22 0 22 +[ 3 2 0 ] 23 0 23 +[ 3 2 1 ] 24 0 24 +*/ + + tid = H5Tcopy(H5T_STD_B8LE); + write_attr(loc_id,3,dims3,"bitfield3D",tid,buf23); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + tid = H5Tcreate(H5T_OPAQUE, 1); + status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ + write_attr(loc_id,3,dims3,"opaque3D",tid,buf23); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + n=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf33[i][j][k].a=0; + buf33[i][j][k].b=0; + } + else { + buf33[i][j][k].a=n++; + buf33[i][j][k].b=n++; + } + } + } + } +/*position compound3D of compound3D of difference +------------------------------------------------------------ +[ 0 0 0 ] 1 0 1 +[ 0 0 0 ] 2 0 2 +[ 0 0 1 ] 3 0 3 +[ 0 0 1 ] 4 0 4 +[ 0 1 0 ] 5 0 5 +[ 0 1 0 ] 6 0 6 +[ 0 1 1 ] 7 0 7 +[ 0 1 1 ] 8 0 8 +[ 0 2 0 ] 9 0 9 +[ 0 2 0 ] 10 0 10 +[ 0 2 1 ] 11 0 11 +[ 0 2 1 ] 12 0 12 +[ 1 0 0 ] 13 0 13 +[ 1 0 0 ] 14 0 14 +[ 1 0 1 ] 15 0 15 +[ 1 0 1 ] 16 0 16 +[ 1 1 0 ] 17 0 17 +[ 1 1 0 ] 18 0 18 +[ 1 1 1 ] 19 0 19 +[ 1 1 1 ] 20 0 20 +[ 1 2 0 ] 21 0 21 +[ 1 2 0 ] 22 0 22 +[ 1 2 1 ] 23 0 23 +[ 1 2 1 ] 24 0 24 +[ 2 0 0 ] 25 0 25 +[ 2 0 0 ] 26 0 26 +[ 2 0 1 ] 27 0 27 +[ 2 0 1 ] 28 0 28 +[ 2 1 0 ] 29 0 29 +[ 2 1 0 ] 30 0 30 +[ 2 1 1 ] 31 0 31 +[ 2 1 1 ] 32 0 32 +[ 2 2 0 ] 33 0 33 +[ 2 2 0 ] 34 0 34 +[ 2 2 1 ] 35 0 35 +[ 2 2 1 ] 36 0 36 +[ 3 0 0 ] 37 0 37 +[ 3 0 0 ] 38 0 38 +[ 3 0 1 ] 39 0 39 +[ 3 0 1 ] 40 0 40 +[ 3 1 0 ] 41 0 41 +[ 3 1 0 ] 42 0 42 +[ 3 1 1 ] 43 0 43 +[ 3 1 1 ] 44 0 44 +[ 3 2 0 ] 45 0 45 +[ 3 2 0 ] 46 0 46 +[ 3 2 1 ] 47 0 47 +[ 3 2 1 ] 48 0 48 +*/ + + + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); + H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); + H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); + write_attr(loc_id,3,dims3,"compound3D",tid,buf33); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_REFERENCE (H5R_OBJECT object reference) + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) + status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1); + } + } + write_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); + } + +/*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN; + } + } + } + +/* +position enum3D of enum3D of difference +------------------------------------------------------------ +[ 0 0 0 ] GREEN RED +[ 0 0 1 ] GREEN RED +[ 0 1 0 ] GREEN RED +[ 0 1 1 ] GREEN RED +[ 0 2 0 ] GREEN RED +[ 0 2 1 ] GREEN RED +[ 1 0 0 ] GREEN RED +[ 1 0 1 ] GREEN RED +[ 1 1 0 ] GREEN RED +[ 1 1 1 ] GREEN RED +[ 1 2 0 ] GREEN RED +[ 1 2 1 ] GREEN RED +[ 2 0 0 ] GREEN RED +[ 2 0 1 ] GREEN RED +[ 2 1 0 ] GREEN RED +[ 2 1 1 ] GREEN RED +[ 2 2 0 ] GREEN RED +[ 2 2 1 ] GREEN RED +[ 3 0 0 ] GREEN RED +[ 3 0 1 ] GREEN RED +[ 3 1 0 ] GREEN RED +[ 3 1 1 ] GREEN RED +[ 3 2 0 ] GREEN RED +[ 3 2 1 ] GREEN RED +*/ + + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); + H5Tenum_insert(tid, "RED", (val = 0, &val)); + H5Tenum_insert(tid, "GREEN", (val = 1, &val)); + write_attr(loc_id,3,dims3,"enum3D",tid,buf453); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n=0; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + int l; + buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); + buf53[i][j][k].len = i + 1; + for (l = 0; l < i + 1; l++) + if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; + else ((int *)buf53[i][j][k].p)[l] = n++; + } + } + } +/* +position vlen3D of vlen3D of difference +------------------------------------------------------------ +[ 0 0 1 ] 1 0 1 +[ 0 1 0 ] 2 0 2 +[ 0 1 1 ] 3 0 3 +[ 0 2 0 ] 4 0 4 +[ 0 2 1 ] 5 0 5 +[ 1 0 0 ] 6 0 6 +[ 1 0 0 ] 7 0 7 +[ 1 0 1 ] 8 0 8 +[ 1 0 1 ] 9 0 9 +[ 1 1 0 ] 10 0 10 +etc +*/ + sid = H5Screate_simple(3,dims3,NULL); + tid = H5Tvlen_create(H5T_NATIVE_INT); + aid = H5Acreate(loc_id,"vlen3D",tid,sid,H5P_DEFAULT); + status = H5Awrite(aid,tid,buf53); + assert(status>=0); + status = H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf53); + assert(status>=0); + status = H5Aclose(aid); + status = H5Tclose(tid); + status = H5Sclose(sid); + +/*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + n=1; + for (i = 0; i < 24; i++) { + for (j = 0; j < (int)dimarray[0]; j++) { + if (make_diffs) buf63[i][j]=0; + else buf63[i][j]=n++; + } + } + /* + position array3D of array3D of difference +------------------------------------------------------------ +[ 0 0 0 ] 1 0 1 +[ 0 0 0 ] 2 0 2 +[ 0 0 0 ] 3 0 3 +[ 0 0 1 ] 4 0 4 +[ 0 0 1 ] 5 0 5 +[ 0 0 1 ] 6 0 6 +[ 0 1 0 ] 7 0 7 +etc +*/ + + tid = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); + write_attr(loc_id,3,dims3,"array3D",tid,buf63); + status = H5Tclose(tid); + +/*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n=1; f=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf73[i][j][k]=0; + buf83[i][j][k]=0; + } + else { + buf73[i][j][k]=n++; + buf83[i][j][k]=f++; + } + } + } + } + + /* + position integer3D of integer3D of difference +------------------------------------------------------------ +[ 0 0 0 ] 1 0 1 +[ 0 0 1 ] 2 0 2 +[ 0 1 0 ] 3 0 3 +[ 0 1 1 ] 4 0 4 +[ 0 2 0 ] 5 0 5 +[ 0 2 1 ] 6 0 6 +[ 1 0 0 ] 7 0 7 +[ 1 0 1 ] 8 0 8 +[ 1 1 0 ] 9 0 9 +[ 1 1 1 ] 10 0 10 +etc +*/ + write_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); + write_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); +} + +/*------------------------------------------------------------------------- + * Function: test_dsetall + * + * Purpose: Check all HDF5 classes + * H5T_INTEGER, H5T_FLOAT + * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, + * H5T_ENUM, H5T_VLEN, H5T_ARRAY + * + *------------------------------------------------------------------------- + */ +static +int test_dsetall(const char *file, + int make_diffs /* flag to modify data buffers */) +{ + hid_t fid; + hid_t did; + hid_t gid; + hid_t sid; + hsize_t dims[1]={2}; + herr_t status; + int buf[2]={1,2}; + + if (make_diffs) + { + memset(buf,0,sizeof buf); + } + + /* Create a file */ + if ((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) + return -1; + + /* Create a 1D dataset */ + sid = H5Screate_simple(1,dims,NULL); + did = H5Dcreate(fid,"dset",H5T_NATIVE_INT,sid,H5P_DEFAULT); + status = H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf); + status = H5Sclose(sid); + assert(status>=0); + + /* Create a group */ + gid = H5Gcreate(fid,"g1",0); + +/*------------------------------------------------------------------------- + * write a series of datasets on the group + *------------------------------------------------------------------------- + */ + + write_dset_in(gid,"/dset",fid,make_diffs); + + /* Close */ + status = H5Dclose(did); + assert(status>=0); + status = H5Gclose(gid); + assert(status>=0); + + /* Close file */ + status = H5Fclose(fid); + assert(status>=0); + return status; +} + +/*------------------------------------------------------------------------- + * Function: test_basic + * + * Purpose: Basic review tests + * + *------------------------------------------------------------------------- + */ +static +int test_basic(const char *file1, + const char *file2) +{ + + hid_t fid1, fid2; + hid_t gid1, gid2, gid3; + herr_t status; + hsize_t dims[2] = { 3,2 }; + + /* Test */ + double data1[3][2] = {{1,1},{1,1},{1,1}}; + double data2[3][2] = {{1,1.1},{1.01,1.001},{1.0001,1}}; + double data3[3][2] = {{100,110},{100,100},{100,100}}; + double data4[3][2] = {{110,100},{90,80},{140,200}}; + int data5[3][2] = {{100,100},{100,100},{100,100}}; + int data6[3][2] = {{101,102},{103,104},{150,200}}; + unsigned long_long data7[3][2] = {{100,100},{100,100},{100,100}}; + unsigned long_long data8[3][2] = {{101,102},{103,104},{150,200}}; + +/*------------------------------------------------------------------------- + * Create two files + *------------------------------------------------------------------------- + */ + + fid1 = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + fid2 = H5Fcreate (file2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* Create groups */ + gid1 = H5Gcreate(fid1, "g1", 0); + gid2 = H5Gcreate(fid2, "g1", 0); + gid3 = H5Gcreate(fid2, "g2", 0); + + write_dset(gid1,2,dims,"dset1",H5T_NATIVE_DOUBLE,data1); + write_dset(gid2,2,dims,"dset2",H5T_NATIVE_DOUBLE,data2); + write_dset(gid1,2,dims,"dset3",H5T_NATIVE_DOUBLE,data3); + write_dset(gid2,2,dims,"dset4",H5T_NATIVE_DOUBLE,data4); + write_dset(gid2,2,dims,"dset1",H5T_NATIVE_DOUBLE,data2); + + /* relative (int) */ + write_dset(gid1,2,dims,"dset5",H5T_NATIVE_INT,data5); + write_dset(gid1,2,dims,"dset6",H5T_NATIVE_INT,data6); + /* relative (unsigned long_long) */ + write_dset(gid1,2,dims,"dset7",H5T_NATIVE_ULLONG,data7); + write_dset(gid1,2,dims,"dset8",H5T_NATIVE_ULLONG,data8); + +/*------------------------------------------------------------------------- + * Close + *------------------------------------------------------------------------- + */ + status = H5Gclose(gid1); + status = H5Gclose(gid2); + status = H5Gclose(gid3); + status = H5Fclose(fid1); + status = H5Fclose(fid2); + return status; +} + +/*------------------------------------------------------------------------- + * Function: test_basic + * + * Purpose: Compare different HDF5 types (H5G_obj_t): + * H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK + * + *------------------------------------------------------------------------- + */ +static +int test_types(const char *file1, + const char UNUSED *file2) +{ + + hid_t fid1; + hid_t gid1; + hid_t gid2; + hid_t tid1; + hid_t tid2; + herr_t status; + hsize_t dims[1]={1}; + typedef struct s1_t + { + int a; + float b; + } s1_t; + typedef struct s2_t + { + int a; + } s2_t; + +/*------------------------------------------------------------------------- + * Create one file + *------------------------------------------------------------------------- + */ + fid1 = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + +/*------------------------------------------------------------------------- + * H5G_DATASET + *------------------------------------------------------------------------- + */ + write_dset(fid1,1,dims,"dset",H5T_NATIVE_INT,0); + +/*------------------------------------------------------------------------- + * H5G_GROUP + *------------------------------------------------------------------------- + */ + gid1 = H5Gcreate(fid1, "g1", 0); + status = H5Gclose(gid1); + gid2 = H5Gcreate(fid1, "g2", 0); + status = H5Gclose(gid2); + +/*------------------------------------------------------------------------- + * H5G_TYPE + *------------------------------------------------------------------------- + */ + + /* create and commit datatype 1 */ + tid1 = H5Tcreate (H5T_COMPOUND, sizeof(s1_t)); + H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT); + H5Tinsert(tid1, "b", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT); + H5Tcommit(fid1, "t1", tid1); + H5Tclose(tid1); + /* create and commit datatype 2 */ + tid2 = H5Tcreate (H5T_COMPOUND, sizeof(s2_t)); + H5Tinsert(tid2, "a", HOFFSET(s2_t, a), H5T_NATIVE_INT); + H5Tcommit(fid1, "t2", tid2); + H5Tclose(tid2); + +/*------------------------------------------------------------------------- + * H5G_LINK + *------------------------------------------------------------------------- + */ + + status = H5Glink(fid1, H5G_LINK_SOFT, "g1", "l1"); + status = H5Glink(fid1, H5G_LINK_SOFT, "g2", "l2"); + +/*------------------------------------------------------------------------- + * Close + *------------------------------------------------------------------------- + */ + status = H5Fclose(fid1); + return status; +} + +/*------------------------------------------------------------------------- + * Function: test_native + * + * Purpose: test datasets datatypes + * + *------------------------------------------------------------------------- + */ +static +int test_native(const char *file1, + const char UNUSED *file2) +{ + + hid_t fid1; + hsize_t dims[2]={3,2}; + herr_t status; + char buf1a[3][2] = {{1,1},{1,1},{1,1}}; + char buf1b[3][2] = {{1,1},{3,4},{5,6}}; + short buf2a[3][2] = {{1,1},{1,1},{1,1}}; + short buf2b[3][2] = {{1,1},{3,4},{5,6}}; + int buf3a[3][2] = {{1,1},{1,1},{1,1}}; + int buf3b[3][2] = {{1,1},{3,4},{5,6}}; + long buf4a[3][2] = {{1,1},{1,1},{1,1}}; + long buf4b[3][2] = {{1,1},{3,4},{5,6}}; + float buf5a[3][2] = {{1,1},{1,1},{1,1}}; + float buf5b[3][2] = {{1,1},{3,4},{5,6}}; + double buf6a[3][2] = {{1,1},{1,1},{1,1}}; + double buf6b[3][2] = {{1,1},{3,4},{5,6}}; + + /*unsigned/signed test + signed char -128 to 127 + unsigned char 0 to 255 + */ + char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}}; + unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}}; + + /* long_long test */ + long_long buf8a[3][2] = {{1,1},{1,1},{1,1}}; + long_long buf8b[3][2] = {{1,1},{3,4},{5,6}}; + unsigned long_long buf9a[3][2] = {{1,1},{1,1},{1,1}}; + unsigned long_long buf9b[3][2] = {{1,1},{3,4},{5,6}}; + + unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; + unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; + + +/*------------------------------------------------------------------------- + * Create a file + *------------------------------------------------------------------------- + */ + fid1 = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + +/*------------------------------------------------------------------------- + * Check for different storage order. Give a warning if they are different + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset0a",H5T_STD_I16LE,buf2a); + write_dset(fid1,2,dims,"dset0b",H5T_STD_I32LE,buf3b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_CHAR + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a); + write_dset(fid1,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_SHORT + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a); + write_dset(fid1,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_INT + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset3a",H5T_NATIVE_INT,buf3a); + write_dset(fid1,2,dims,"dset3b",H5T_NATIVE_INT,buf3b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_LONG + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a); + write_dset(fid1,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_FLOAT + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a); + write_dset(fid1,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b); + +/*------------------------------------------------------------------------- + * Check H5T_NATIVE_DOUBLE + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a); + write_dset(fid1,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b); + +/*------------------------------------------------------------------------- + * H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a); + write_dset(fid1,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b); + +/*------------------------------------------------------------------------- + * H5T_NATIVE_LLONG + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a); + write_dset(fid1,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b); + +/*------------------------------------------------------------------------- + * H5T_NATIVE_ULLONG + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a); + write_dset(fid1,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b); + +/*------------------------------------------------------------------------- + * H5T_NATIVE_INT + *------------------------------------------------------------------------- + */ + + write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); + write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); + + +/*------------------------------------------------------------------------- + * Close + *------------------------------------------------------------------------- + */ + status = H5Fclose(fid1); + return status; +} + +/*------------------------------------------------------------------------- + * Function: test_attr + * + * Purpose: test attributes + * + *------------------------------------------------------------------------- + */ +static +int test_attr(const char *file, + int make_diffs /* flag to modify data buffers */) +{ + hid_t fid; + hid_t did; + hid_t gid; + hid_t root_id; + hid_t sid; + hsize_t dims[1]={2}; + herr_t status; + + /* Create a file */ + if ((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) + return -1; + + /* Create a 1D dataset */ + sid = H5Screate_simple(1,dims,NULL); + did = H5Dcreate(fid,"dset",H5T_NATIVE_INT,sid,H5P_DEFAULT); + status = H5Sclose(sid); + assert(status>=0); + + /* Create groups */ + gid = H5Gcreate(fid,"g1",0); + root_id = H5Gopen(fid, "/"); + +/*------------------------------------------------------------------------- + * write a series of attributes on the dataset, group, and root group + *------------------------------------------------------------------------- + */ + + write_attr_in(did,"dset",fid,make_diffs); + write_attr_in(gid,NULL,0,make_diffs); + write_attr_in(root_id,NULL,0,make_diffs); + + + /* Close */ + status = H5Dclose(did); + assert(status>=0); + status = H5Gclose(gid); + assert(status>=0); + status = H5Gclose(root_id); + assert(status>=0); + + /* Close file */ + status = H5Fclose(fid); + assert(status>=0); + return status; +} + + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: main program + * + *------------------------------------------------------------------------- + */ + +int main(int UNUSED argc, const UNUSED char *argv[]) +{ + + test_basic (FILE1,FILE2); + test_types (FILE3,NULL); + test_native(FILE4,NULL); + + /* generate 2 files with attribute differences */ + test_attr(FILE5,0); + test_attr(FILE6,1); + + /* generate 2 files with all datatype differences */ + test_dsetall(FILE7,0); + test_dsetall(FILE8,1); + return 0; +} + diff --git a/tools/h5diff/testh5diff.h b/tools/h5diff/testh5diff.h deleted file mode 100644 index c450e3e..0000000 --- a/tools/h5diff/testh5diff.h +++ /dev/null @@ -1,53 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include -#include -#include "hdf5.h" -#include "H5private.h" - - -int test_basic(const char *file1, - const char *file2); - -int test_types(const char *file1, - const char *file2); - -int test_native(const char *file1, - const char *file2); - - -int test_dsetall(const char *file, - int make_diffs /* flag to modify data buffers */); - -int test_attr(const char *file, - int make_diffs /* flag to modify data buffers */); - - -int write_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t type_id, - void *buf); - - -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *dset_name, - hid_t type_id, - void *buf ); - - diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh index 4cbad3f..044206a 100755 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh @@ -240,7 +240,7 @@ SKIP() { ############################################################################## ############################################################################## -### T H E T E S T S ### +### T H E T E S T S ### ############################################################################## ############################################################################## @@ -348,8 +348,8 @@ TOOLTEST h5diff_56.txt file4.h5 file4.h5 -v dset6a dset6b # 5.7 TOOLTEST h5diff_57.txt file4.h5 file4.h5 -v dset7a dset7b -# 5.8 long_long test; different format of long_long print in Linux and IRIX -#TOOLTEST h5diff_58.txt file4.h5 file4.h5 dset8a dset8b +# 5.8 (region reference) +TOOLTEST h5diff_58.txt file7.h5 file8.h5 -v refreg # ############################################################################## # # Error messages @@ -482,18 +482,10 @@ TOOLTEST h5diff_80.txt file7.h5 file8.h5 -v TOOLTEST h5diff_90.txt file1.h5 file1.h5 - - - - - - # ############################################################################## # # END # ############################################################################## - - if test $nerrors -eq 0 ; then echo "All $H5DIFF tests passed." fi diff --git a/tools/h5diff/testh5diff_attr.c b/tools/h5diff/testh5diff_attr.c deleted file mode 100644 index 3a962de..0000000 --- a/tools/h5diff/testh5diff_attr.c +++ /dev/null @@ -1,1088 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "testh5diff.h" - - - -/*------------------------------------------------------------------------- - * Function: write_attr_in - * - * Purpose: write attributes in LOC_ID (dataset, group, named datatype) - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -static void write_attr_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t file_id, - int make_diffs /* flag to modify data buffers */) -{ - /* Compound datatype */ - typedef struct s_t - { - char a; - double b; - } s_t; - - typedef enum - { - RED, - GREEN - } e_t; - - hid_t attr_id; - hid_t space_id; - hid_t type_id; - herr_t status; - int val, i, j, k, n; - float f; - - /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][2]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,RED}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ - - /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - e_t buf452[3][2]; /* enum */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - - /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - e_t buf453[4][3][2]; /* enum */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - -/*------------------------------------------------------------------------- - * 1D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - { - buf1[i][j]='z'; - } - } - /* - buf1[2][2]= {"ab","de"}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and - position string of string of difference - ------------------------------------------------------------ -[ 0 ] a z -[ 0 ] b z -[ 1 ] d z -[ 1 ] e z - */ - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_attr(loc_id,1,dims,"string",type_id,buf1); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } - /* - buf2[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and - position bitfield of bitfield of difference - position opaque of opaque of difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 - */ - - type_id = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,1,dims,"bitfield",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - /* - buf2[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and - position opaque of opaque of difference - position opaque of opaque of difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 -*/ - - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,1,dims,"opaque",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; - } - } - - /* - buf3[2]= {{1,2},{3,4}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and - position compound of compound of difference - ------------------------------------------------------------ - [ 0 ] 1 5 4 - [ 0 ] 2 5 3 - [ 1 ] 3 5 2 - [ 1 ] 4 5 1 - */ - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,1,dims,"compound",type_id,buf3); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1); - status=H5Rcreate(&buf4[1],file_id,dset_name,H5R_OBJECT,-1); - write_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; - } - } - /* - buf45[2]= {RED,RED}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and - position enum of enum of difference ------------------------------------------------------------- -[ 0 ] RED GREEN -[ 1 ] RED GREEN - */ - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_attr(loc_id,1,dims,"enum",type_id,buf45); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - - buf5[0].len = 1; - buf5[0].p = malloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = malloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; - - if (make_diffs) - { - ((int *)buf5[0].p)[0]=0; - ((int *)buf5[1].p)[0]=0; - ((int *)buf5[1].p)[1]=0; - } - /* - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - position vlen of vlen of difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 -[ 1 ] 3 0 3 - */ - - space_id = H5Screate_simple(1,dims,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf5); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } - } - /* - buf6[2][3]= {{1,2,3},{4,5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - Attribute: and -position array of array of difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 0 ] 2 0 2 -[ 0 ] 3 0 3 -[ 1 ] 4 0 4 -[ 1 ] 5 0 5 -[ 1 ] 6 0 6 - */ - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_attr(loc_id,1,dims,"array",type_id,buf6); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; - } - } - /* - buf7[2]= {1,2}; - buf8[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and - position integer of integer of difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - position float of float of difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - */ - write_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - write_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - -/*------------------------------------------------------------------------- - * 2D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - memset(buf12, 'z', sizeof buf12); - } - - /* - buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: and - position string2D of string2D of difference - ------------------------------------------------------------ -[ 0 0 ] a z -[ 0 0 ] b z -[ 0 1 ] c z -[ 0 1 ] d z -[ 1 0 ] e z -[ 1 0 ] f z -[ 1 1 ] g z -[ 1 1 ] h z -[ 2 0 ] i z -[ 2 0 ] j z -[ 2 1 ] k z -[ 2 1 ] l z - */ - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_attr(loc_id,2,dims2,"string2D",type_id,buf12); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } - - /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: and - position bitfield2D of bitfield2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - - - type_id = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,2,dims2,"bitfield2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: and - position opaque2D of opaque2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,2,dims2,"opaque2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } - - /* - buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: and - position opaque2D of opaque2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,2,dims2,"compound2D",type_id,buf32); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - for (i=0; i<3; i++) - for (j=0; j<2; j++) - { - if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; - } - -/* -Attribute: and -position enum2D of enum2D of difference ------------------------------------------------------------- -[ 0 0 ] RED GREEN -[ 0 1 ] RED GREEN -[ 1 0 ] RED GREEN -[ 1 1 ] RED GREEN -[ 2 0 ] RED GREEN -[ 2 1 ] RED GREEN -*/ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_attr(loc_id,2,dims2,"enum2D",type_id,buf452); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - int l; - buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf52[i][j].p)[l] = 0; - else ((int *)buf52[i][j].p)[l] = n++; - } - } - - /* - position vlen2D of vlen2D of difference ------------------------------------------------------------- -[ 0 1 ] 1 0 1 -[ 1 0 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 1 1 ] 5 0 5 -[ 2 0 ] 6 0 6 -[ 2 0 ] 7 0 7 -[ 2 0 ] 8 0 8 -[ 2 1 ] 9 0 9 -[ 2 1 ] 10 0 10 -[ 2 1 ] 11 0 11 -*/ - - space_id = H5Screate_simple(2,dims2,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf52); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } - /* - buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: and -Attribute: and -position array2D of array2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 0 ] 2 0 2 -[ 0 0 ] 3 0 3 -[ 0 1 ] 4 0 4 -[ 0 1 ] 5 0 5 -[ 0 1 ] 6 0 6 -[ 1 0 ] 7 0 7 -[ 1 0 ] 8 0 8 -[ 1 0 ] 9 0 9 -[ 1 1 ] 10 0 10 -[ 1 1 ] 11 0 11 -[ 1 1 ] 12 0 12 -[ 2 0 ] 13 0 13 -[ 2 0 ] 14 0 14 -[ 2 0 ] 15 0 15 -[ 2 1 ] 16 0 16 -[ 2 1 ] 17 0 17 -[ 2 1 ] 18 0 18 - */ - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_attr(loc_id,2,dims2,"array2D",type_id,buf62); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf72,0,sizeof buf72); - memset(buf82,0,sizeof buf82); - } -/* -Attribute: and -position integer2D of integer2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 -6 differences found -Attribute: and -position float2D of float2D of difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 -*/ - - write_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72); - write_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - -/*------------------------------------------------------------------------- - * 3D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf13,'z',sizeof buf13); - } - - /* - buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; - -Attribute: and -position string3D of string3D of difference ------------------------------------------------------------- -[ 0 0 0 ] a z -[ 0 0 0 ] b z -[ 0 0 1 ] c z -[ 0 0 1 ] d z -[ 0 1 0 ] e z -[ 0 1 0 ] f z -[ 0 1 1 ] g z -[ 0 1 1 ] h z -[ 0 2 0 ] i z -[ 0 2 0 ] j z -[ 0 2 1 ] k z -[ 0 2 1 ] l z -[ 1 0 0 ] m z -[ 1 0 0 ] n z -[ 1 0 1 ] p z -[ 1 0 1 ] q z -[ 1 1 0 ] r z -[ 1 1 0 ] s z -[ 1 1 1 ] t z -[ 1 1 1 ] u z -[ 1 2 0 ] v z -[ 1 2 0 ] w z -[ 1 2 1 ] x z -[ 2 0 0 ] A z -[ 2 0 0 ] B z -[ 2 0 1 ] C z -[ 2 0 1 ] D z -[ 2 1 0 ] E z -[ 2 1 0 ] F z -[ 2 1 1 ] G z -[ 2 1 1 ] H z -[ 2 2 0 ] I z -[ 2 2 0 ] J z -[ 2 2 1 ] K z -[ 2 2 1 ] L z -[ 3 0 0 ] M z -[ 3 0 0 ] N z -[ 3 0 1 ] P z -[ 3 0 1 ] Q z -[ 3 1 0 ] R z -[ 3 1 0 ] S z -[ 3 1 1 ] T z -[ 3 1 1 ] U z -[ 3 2 0 ] V z -[ 3 2 0 ] W z -[ 3 2 1 ] X z -[ 3 2 1 ] Z z - */ - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_attr(loc_id,3,dims3,"string3D",type_id,buf13); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf23[i][j][k]=0; - else buf23[i][j][k]=n++; - } - } - } - -/* -position bitfield3D of bitfield3D of difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 1 ] 2 0 2 -[ 0 1 0 ] 3 0 3 -[ 0 1 1 ] 4 0 4 -[ 0 2 0 ] 5 0 5 -[ 0 2 1 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 1 0 ] 9 0 9 -[ 1 1 1 ] 10 0 10 -[ 1 2 0 ] 11 0 11 -[ 1 2 1 ] 12 0 12 -[ 2 0 0 ] 13 0 13 -[ 2 0 1 ] 14 0 14 -[ 2 1 0 ] 15 0 15 -[ 2 1 1 ] 16 0 16 -[ 2 2 0 ] 17 0 17 -[ 2 2 1 ] 18 0 18 -[ 3 0 0 ] 19 0 19 -[ 3 0 1 ] 20 0 20 -[ 3 1 0 ] 21 0 21 -[ 3 1 1 ] 22 0 22 -[ 3 2 0 ] 23 0 23 -[ 3 2 1 ] 24 0 24 -*/ - - type_id = H5Tcopy(H5T_STD_B8LE); - write_attr(loc_id,3,dims3,"bitfield3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_attr(loc_id,3,dims3,"opaque3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf33[i][j][k].a=0; - buf33[i][j][k].b=0; - } - else { - buf33[i][j][k].a=n++; - buf33[i][j][k].b=n++; - } - } - } - } -/*position compound3D of compound3D of difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 0 ] 2 0 2 -[ 0 0 1 ] 3 0 3 -[ 0 0 1 ] 4 0 4 -[ 0 1 0 ] 5 0 5 -[ 0 1 0 ] 6 0 6 -[ 0 1 1 ] 7 0 7 -[ 0 1 1 ] 8 0 8 -[ 0 2 0 ] 9 0 9 -[ 0 2 0 ] 10 0 10 -[ 0 2 1 ] 11 0 11 -[ 0 2 1 ] 12 0 12 -[ 1 0 0 ] 13 0 13 -[ 1 0 0 ] 14 0 14 -[ 1 0 1 ] 15 0 15 -[ 1 0 1 ] 16 0 16 -[ 1 1 0 ] 17 0 17 -[ 1 1 0 ] 18 0 18 -[ 1 1 1 ] 19 0 19 -[ 1 1 1 ] 20 0 20 -[ 1 2 0 ] 21 0 21 -[ 1 2 0 ] 22 0 22 -[ 1 2 1 ] 23 0 23 -[ 1 2 1 ] 24 0 24 -[ 2 0 0 ] 25 0 25 -[ 2 0 0 ] 26 0 26 -[ 2 0 1 ] 27 0 27 -[ 2 0 1 ] 28 0 28 -[ 2 1 0 ] 29 0 29 -[ 2 1 0 ] 30 0 30 -[ 2 1 1 ] 31 0 31 -[ 2 1 1 ] 32 0 32 -[ 2 2 0 ] 33 0 33 -[ 2 2 0 ] 34 0 34 -[ 2 2 1 ] 35 0 35 -[ 2 2 1 ] 36 0 36 -[ 3 0 0 ] 37 0 37 -[ 3 0 0 ] 38 0 38 -[ 3 0 1 ] 39 0 39 -[ 3 0 1 ] 40 0 40 -[ 3 1 0 ] 41 0 41 -[ 3 1 0 ] 42 0 42 -[ 3 1 1 ] 43 0 43 -[ 3 1 1 ] 44 0 44 -[ 3 2 0 ] 45 0 45 -[ 3 2 0 ] 46 0 46 -[ 3 2 1 ] 47 0 47 -[ 3 2 1 ] 48 0 48 -*/ - - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_attr(loc_id,3,dims3,"compound3D",type_id,buf33); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) - status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN; - } - } - } - -/* -position enum3D of enum3D of difference ------------------------------------------------------------- -[ 0 0 0 ] GREEN RED -[ 0 0 1 ] GREEN RED -[ 0 1 0 ] GREEN RED -[ 0 1 1 ] GREEN RED -[ 0 2 0 ] GREEN RED -[ 0 2 1 ] GREEN RED -[ 1 0 0 ] GREEN RED -[ 1 0 1 ] GREEN RED -[ 1 1 0 ] GREEN RED -[ 1 1 1 ] GREEN RED -[ 1 2 0 ] GREEN RED -[ 1 2 1 ] GREEN RED -[ 2 0 0 ] GREEN RED -[ 2 0 1 ] GREEN RED -[ 2 1 0 ] GREEN RED -[ 2 1 1 ] GREEN RED -[ 2 2 0 ] GREEN RED -[ 2 2 1 ] GREEN RED -[ 3 0 0 ] GREEN RED -[ 3 0 1 ] GREEN RED -[ 3 1 0 ] GREEN RED -[ 3 1 1 ] GREEN RED -[ 3 2 0 ] GREEN RED -[ 3 2 1 ] GREEN RED -*/ - - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_attr(loc_id,3,dims3,"enum3D",type_id,buf453); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - int l; - buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; - else ((int *)buf53[i][j][k].p)[l] = n++; - } - } - } -/* -position vlen3D of vlen3D of difference ------------------------------------------------------------- -[ 0 0 1 ] 1 0 1 -[ 0 1 0 ] 2 0 2 -[ 0 1 1 ] 3 0 3 -[ 0 2 0 ] 4 0 4 -[ 0 2 1 ] 5 0 5 -[ 1 0 0 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 0 1 ] 9 0 9 -[ 1 1 0 ] 10 0 10 -etc -*/ - space_id = H5Screate_simple(3,dims3,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf53); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - n=1; - for (i = 0; i < 24; i++) { - for (j = 0; j < (int)dimarray[0]; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; - } - } - /* - position array3D of array3D of difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 0 ] 2 0 2 -[ 0 0 0 ] 3 0 3 -[ 0 0 1 ] 4 0 4 -[ 0 0 1 ] 5 0 5 -[ 0 0 1 ] 6 0 6 -[ 0 1 0 ] 7 0 7 -etc -*/ - - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_attr(loc_id,3,dims3,"array3D",type_id,buf63); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0; - } - else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; - } - } - } - } - - /* - position integer3D of integer3D of difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 1 ] 2 0 2 -[ 0 1 0 ] 3 0 3 -[ 0 1 1 ] 4 0 4 -[ 0 2 0 ] 5 0 5 -[ 0 2 1 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 1 0 ] 9 0 9 -[ 1 1 1 ] 10 0 10 -etc -*/ - write_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - write_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); -} - - - -/*------------------------------------------------------------------------- - * Check all HDF5 classes - * H5T_INTEGER, H5T_FLOAT - * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, - * H5T_ENUM, H5T_VLEN, H5T_ARRAY - *------------------------------------------------------------------------- - */ - - -int test_attr(const char *file, - int make_diffs /* flag to modify data buffers */) -{ - hid_t file_id; - hid_t dset_id; - hid_t group_id; - hid_t root_id; - hid_t space_id; - hsize_t dims[1]={2}; - herr_t status; - - /* Create a file */ - if ((file_id = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) - return -1; - - /* Create a 1D dataset */ - space_id = H5Screate_simple(1,dims,NULL); - dset_id = H5Dcreate(file_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT); - status = H5Sclose(space_id); - assert(status>=0); - - /* Create groups */ - group_id = H5Gcreate(file_id,"g1",0); - root_id = H5Gopen(file_id, "/"); - -/*------------------------------------------------------------------------- - * write a series of attributes on the dataset, group, and root group - *------------------------------------------------------------------------- - */ - - write_attr_in(dset_id,"dset",file_id,make_diffs); - write_attr_in(group_id,NULL,0,make_diffs); - write_attr_in(root_id,NULL,0,make_diffs); - - - /* Close */ - status = H5Dclose(dset_id); - assert(status>=0); - status = H5Gclose(group_id); - assert(status>=0); - status = H5Gclose(root_id); - assert(status>=0); - - /* Close file */ - status = H5Fclose(file_id); - assert(status>=0); - return status; -} diff --git a/tools/h5diff/testh5diff_basic.c b/tools/h5diff/testh5diff_basic.c deleted file mode 100644 index 4a99c84..0000000 --- a/tools/h5diff/testh5diff_basic.c +++ /dev/null @@ -1,515 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "testh5diff.h" - -/*UINT_MAX Maximum value for a variable of type unsigned int. 4294967295 */ -#define UIMAX 4294967295u - -/* - -# ############################################################################## -# # Common usage -# ############################################################################## - - -# 1.0 - -h - -# 1.1 - file1.h5 file2.h5 g1/dset1 g1/dset2 - -# 1.2 - file1.h5 file2.h5 -n 2 g1/dset1 g1/dset2 - -# 1.3 - file1.h5 file2.h5 -d 5 g1/dset3 g1/dset4 - -# 1.4 - file1.h5 file2.h5 -p 0.05 g1/dset3 g1/dset4 - -# 1.5 - file1.h5 file2.h5 -r g1/dset1 g1/dset2 - -# 1.6 - file1.h5 file2.h5 - -# ############################################################################## -# # basic types -# ############################################################################## - -# 2.0 - file3.h5 file3.h5 dset group - -# 2.1 - file3.h5 file3.h5 dset link - -# 2.2 - file3.h5 file3.h5 dset type - -# 2.3 - file3.h5 file3.h5 group group - -# 2.4 - file3.h5 file3.h5 type type - -# 2.5 - file3.h5 file3.h5 link link - - -# ############################################################################## -# # Dimensions -# ############################################################################## - -# 4.0 - file5.h5 file5.h5 dset1 dset2 - -# 4.1 - file5.h5 file5.h5 dset3 dset4 - -# 4.2 - file5.h5 file5.h5 dset5 dset6 - - -# ############################################################################## -# # Dataset types -# ############################################################################## - -# 5.0 - file6.h5 file6.h5 dset0a dset0b - -# 5.1 - file6.h5 file6.h5 dset1a dset1b - -# 5.2 - file6.h5 file6.h5 dset2a dset2b - -# 5.3 - file6.h5 file6.h5 dset3a dset4b - -# 5.4 - file6.h5 file6.h5 dset4a dset4b - -# 5.5 - file6.h5 file6.h5 dset5a dset5b - -# 5.6 - file6.h5 file6.h5 dset6a dset6b - -# 5.7 - file6.h5 file6.h5 dset7a dset7b - -# 5.8 - file6.h5 file6.h5 dset8a dset8b - -# ############################################################################## -# # Error messages -# ############################################################################## - - -# 6.0: Check if the command line number of arguments is less than 3 - h5diff_test1.h5 - -# 6.1: Check for invalid options - h5diff_test1.h5 h5diff_test2.h5 -x - -# ############################################################################## -# # -d -# ############################################################################## - -# 6.2: no value - file1.h5 file2.h5 -d g1/dset3 g1/dset4 - -# 6.3: negative value - file1.h5 file2.h5 -d -4 g1/dset3 g1/dset4 - -# 6.4: zero - file1.h5 file2.h5 -d 0 g1/dset3 g1/dset4 - -# 6.5: non number - file1.h5 file2.h5 -d u g1/dset3 g1/dset4 - -# 6.6: hexadecimal - file1.h5 file2.h5 -d 0x1 g1/dset3 g1/dset4 - -# 6.7: string - file1.h5 file2.h5 -d "1" g1/dset3 g1/dset4 - -# 6.8: repeated option - file1.h5 file2.h5 -d 1 -d 2 g1/dset3 g1/dset4 - -# 6.9: number larger than biggest difference - file1.h5 file2.h5 -d 200 g1/dset3 g1/dset4 - -# 6.10: number smaller than smallest difference - file1.h5 file2.h5 -d 1 g1/dset3 g1/dset4 - - -# ############################################################################## -# # -p -# ############################################################################## - - -# 6.11: no value - file1.h5 file2.h5 -p g1/dset3 g1/dset4 - -# 6.12: negative value - file1.h5 file2.h5 -p -4 g1/dset3 g1/dset4 - -# 6.13: zero - file1.h5 file2.h5 -p 0 g1/dset3 g1/dset4 - -# 6.14: non number - file1.h5 file2.h5 -p u g1/dset3 g1/dset4 - -# 6.15: hexadecimal - file1.h5 file2.h5 -p 0x1 g1/dset3 g1/dset4 - -# 6.16: string - file1.h5 file2.h5 -p "0.21" g1/dset3 g1/dset4 - -# 6.17: repeated option - file1.h5 file2.h5 -p 0.21 -p 0.22 g1/dset3 g1/dset4 - -# 6.18: number larger than biggest difference - file1.h5 file2.h5 -p 2 g1/dset3 g1/dset4 - -# 6.19: number smaller than smallest difference - file1.h5 file2.h5 -p 0.005 g1/dset3 g1/dset4 - - - -# ############################################################################## -# # -n -# ############################################################################## - - -# 6.20: no value - file1.h5 file2.h5 -n g1/dset3 g1/dset4 - -# 6.21: negative value - file1.h5 file2.h5 -n -4 g1/dset3 g1/dset4 - -# 6.22: zero - file1.h5 file2.h5 -n 0 g1/dset3 g1/dset4 - -# 6.23: non number - file1.h5 file2.h5 -n u g1/dset3 g1/dset4 - -# 6.24: hexadecimal - file1.h5 file2.h5 -n 0x1 g1/dset3 g1/dset4 - -# 6.25: string - file1.h5 file2.h5 -n "2" g1/dset3 g1/dset4 - -# 6.26: repeated option - file1.h5 file2.h5 -n 2 -n 3 g1/dset3 g1/dset4 - -# 6.27: number larger than biggest difference - file1.h5 file2.h5 -n 200 g1/dset3 g1/dset4 - -# 6.28: number smaller than smallest difference - file1.h5 file2.h5 -n 1 g1/dset3 g1/dset4 - -# ############################################################################## -# # non valid files -# ############################################################################## - - file1.h6 file2.h6 - -*/ - - -/*------------------------------------------------------------------------- - * Basic review tests - *------------------------------------------------------------------------- - */ - -int test_basic(const char *file1, const char *file2) -{ - - hid_t file1_id, file2_id; - hid_t group1_id, group2_id, group3_id; - herr_t status; - hsize_t dims[2] = { 3,2 }; - - /* Test */ - double data1[3][2] = {{1,1},{1,1},{1,1}}; - double data2[3][2] = {{1,1.1},{1.01,1.001},{1.0001,1}}; - double data3[3][2] = {{100,110},{100,100},{100,100}}; - double data4[3][2] = {{110,100},{90,80},{140,200}}; - int data5[3][2] = {{100,100},{100,100},{100,100}}; - int data6[3][2] = {{101,102},{103,104},{150,200}}; - unsigned long_long data7[3][2] = {{100,100},{100,100},{100,100}}; - unsigned long_long data8[3][2] = {{101,102},{103,104},{150,200}}; - -/*------------------------------------------------------------------------- - * Create two files - *------------------------------------------------------------------------- - */ - - file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - file2_id = H5Fcreate (file2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - - /* Create groups */ - group1_id = H5Gcreate(file1_id, "g1", 0); - group2_id = H5Gcreate(file2_id, "g1", 0); - group3_id = H5Gcreate(file2_id, "g2", 0); - - write_dset(group1_id,2,dims,"dset1",H5T_NATIVE_DOUBLE,data1); - write_dset(group2_id,2,dims,"dset2",H5T_NATIVE_DOUBLE,data2); - write_dset(group1_id,2,dims,"dset3",H5T_NATIVE_DOUBLE,data3); - write_dset(group2_id,2,dims,"dset4",H5T_NATIVE_DOUBLE,data4); - write_dset(group2_id,2,dims,"dset1",H5T_NATIVE_DOUBLE,data2); - - /* relative (int) */ - write_dset(group1_id,2,dims,"dset5",H5T_NATIVE_INT,data5); - write_dset(group1_id,2,dims,"dset6",H5T_NATIVE_INT,data6); - /* relative (unsigned long_long) */ - write_dset(group1_id,2,dims,"dset7",H5T_NATIVE_ULLONG,data7); - write_dset(group1_id,2,dims,"dset8",H5T_NATIVE_ULLONG,data8); - -/*------------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------- - */ - status = H5Gclose(group1_id); - status = H5Gclose(group2_id); - status = H5Gclose(group3_id); - status = H5Fclose(file1_id); - status = H5Fclose(file2_id); - return status; -} - -/*------------------------------------------------------------------------- - * Compare different HDF5 types (H5G_obj_t): - * H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK - *------------------------------------------------------------------------- - */ - -int test_types(const char *file1, const char UNUSED *file2) -{ - - hid_t file1_id; - hid_t g1_id; - hid_t g2_id; - hid_t t1_id; - hid_t t2_id; - herr_t status; - hsize_t dims[1]={1}; - typedef struct s1_t - { - int a; - float b; - } s1_t; - typedef struct s2_t - { - int a; - } s2_t; - -/*------------------------------------------------------------------------- - * Create one file - *------------------------------------------------------------------------- - */ - file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - -/*------------------------------------------------------------------------- - * H5G_DATASET - *------------------------------------------------------------------------- - */ - write_dset(file1_id,1,dims,"dset",H5T_NATIVE_INT,0); - -/*------------------------------------------------------------------------- - * H5G_GROUP - *------------------------------------------------------------------------- - */ - g1_id = H5Gcreate(file1_id, "g1", 0); - status = H5Gclose(g1_id); - g2_id = H5Gcreate(file1_id, "g2", 0); - status = H5Gclose(g2_id); - -/*------------------------------------------------------------------------- - * H5G_TYPE - *------------------------------------------------------------------------- - */ - - /* create and commit datatype 1 */ - t1_id = H5Tcreate (H5T_COMPOUND, sizeof(s1_t)); - H5Tinsert(t1_id, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT); - H5Tinsert(t1_id, "b", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT); - H5Tcommit(file1_id, "t1", t1_id); - H5Tclose(t1_id); - /* create and commit datatype 2 */ - t2_id = H5Tcreate (H5T_COMPOUND, sizeof(s2_t)); - H5Tinsert(t2_id, "a", HOFFSET(s2_t, a), H5T_NATIVE_INT); - H5Tcommit(file1_id, "t2", t2_id); - H5Tclose(t2_id); - -/*------------------------------------------------------------------------- - * H5G_LINK - *------------------------------------------------------------------------- - */ - - status = H5Glink(file1_id, H5G_LINK_SOFT, "g1", "l1"); - status = H5Glink(file1_id, H5G_LINK_SOFT, "g2", "l2"); - -/*------------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------- - */ - status = H5Fclose(file1_id); - return status; -} - - -/*------------------------------------------------------------------------- - * Datasets datatypes - *------------------------------------------------------------------------- - */ - -int test_native(const char *file1, const char UNUSED *file2) -{ - - hid_t file1_id; - hsize_t dims[2]={3,2}; - herr_t status; - char buf1a[3][2] = {{1,1},{1,1},{1,1}}; - char buf1b[3][2] = {{1,1},{3,4},{5,6}}; - short buf2a[3][2] = {{1,1},{1,1},{1,1}}; - short buf2b[3][2] = {{1,1},{3,4},{5,6}}; - int buf3a[3][2] = {{1,1},{1,1},{1,1}}; - int buf3b[3][2] = {{1,1},{3,4},{5,6}}; - long buf4a[3][2] = {{1,1},{1,1},{1,1}}; - long buf4b[3][2] = {{1,1},{3,4},{5,6}}; - float buf5a[3][2] = {{1,1},{1,1},{1,1}}; - float buf5b[3][2] = {{1,1},{3,4},{5,6}}; - double buf6a[3][2] = {{1,1},{1,1},{1,1}}; - double buf6b[3][2] = {{1,1},{3,4},{5,6}}; - - /*unsigned/signed test - signed char -128 to 127 - unsigned char 0 to 255 - */ - char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}}; - unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}}; - - /* long_long test */ - long_long buf8a[3][2] = {{1,1},{1,1},{1,1}}; - long_long buf8b[3][2] = {{1,1},{3,4},{5,6}}; - unsigned long_long buf9a[3][2] = {{1,1},{1,1},{1,1}}; - unsigned long_long buf9b[3][2] = {{1,1},{3,4},{5,6}}; - - unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; - unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; - - -/*------------------------------------------------------------------------- - * Create a file - *------------------------------------------------------------------------- - */ - file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - -/*------------------------------------------------------------------------- - * Check for different storage order. Give a warning if they are different - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset0a",H5T_STD_I16LE,buf2a); - write_dset(file1_id,2,dims,"dset0b",H5T_STD_I32LE,buf3b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_CHAR - *------------------------------------------------------------------------- - */ - write_dset(file1_id,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a); - write_dset(file1_id,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_SHORT - *------------------------------------------------------------------------- - */ - write_dset(file1_id,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a); - write_dset(file1_id,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_INT - *------------------------------------------------------------------------- - */ - write_dset(file1_id,2,dims,"dset3a",H5T_NATIVE_INT,buf3a); - write_dset(file1_id,2,dims,"dset3b",H5T_NATIVE_INT,buf3b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_LONG - *------------------------------------------------------------------------- - */ - write_dset(file1_id,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a); - write_dset(file1_id,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_FLOAT - *------------------------------------------------------------------------- - */ - write_dset(file1_id,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a); - write_dset(file1_id,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b); - -/*------------------------------------------------------------------------- - * Check H5T_NATIVE_DOUBLE - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a); - write_dset(file1_id,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b); - -/*------------------------------------------------------------------------- - * H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a); - write_dset(file1_id,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b); - -/*------------------------------------------------------------------------- - * H5T_NATIVE_LLONG - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a); - write_dset(file1_id,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b); - -/*------------------------------------------------------------------------- - * H5T_NATIVE_ULLONG - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a); - write_dset(file1_id,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b); - -/*------------------------------------------------------------------------- - * H5T_NATIVE_INT - *------------------------------------------------------------------------- - */ - - write_dset(file1_id,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); - write_dset(file1_id,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); - - -/*------------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------- - */ - status = H5Fclose(file1_id); - return status; -} - - diff --git a/tools/h5diff/testh5diff_dset.c b/tools/h5diff/testh5diff_dset.c deleted file mode 100644 index 6d18c8a..0000000 --- a/tools/h5diff/testh5diff_dset.c +++ /dev/null @@ -1,665 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "testh5diff.h" - -#define STR_SIZE 3 - -/*------------------------------------------------------------------------- - * Function: write_dset_in - * - * Purpose: write datasets in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -static void write_dset_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t file_id, - int make_diffs /* flag to modify data buffers */) -{ - /* Compound datatype */ - typedef struct s_t - { - char a; - double b; - } s_t; - - typedef enum - { - RED, - GREEN - } e_t; - - hid_t dset_id; - hid_t space_id; - hid_t type_id; - hid_t plist_id; - herr_t status; - int val, i, j, k, n; - float f; - int fillvalue=2; - - /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,GREEN}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ - - /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[6][STR_SIZE]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - - /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[24][STR_SIZE]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - -/*------------------------------------------------------------------------- - * 1D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - { - buf1[i][j]='z'; - } - } - - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id,STR_SIZE); - write_dset(loc_id,1,dims,"string",type_id,buf1); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,1,dims,"bitfield",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; - } - } - - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,1,dims,"opaque",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; - } - } - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,1,dims,"compound",type_id,buf3); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1); - status=H5Rcreate(&buf4[1],file_id,dset_name,H5R_OBJECT,-1); - write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,1,dims,"enum",type_id,buf45); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - - buf5[0].len = 1; - buf5[0].p = malloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = malloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; - - if (make_diffs) - { - ((int *)buf5[0].p)[0]=0; - ((int *)buf5[1].p)[0]=0; - ((int *)buf5[1].p)[1]=0; - } - - space_id = H5Screate_simple(1,dims,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } - } - - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_dset(loc_id,1,dims,"array",type_id,buf6); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; - } - } - - write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - -/*------------------------------------------------------------------------- - * 2D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf12, 'z', sizeof buf12); - } - - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id,STR_SIZE); - write_dset(loc_id,2,dims2,"string2D",type_id,buf12); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,2,dims2,"compound2D",type_id,buf32); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,2,dims2,"enum2D",type_id,0); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - -/* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - int l; - buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf52[i][j].p)[l] = 0; - else ((int *)buf52[i][j].p)[l] = n++; - } - } - - space_id = H5Screate_simple(2,dims2,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } - - - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_dset(loc_id,2,dims2,"array2D",type_id,buf62); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER, write a fill value - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - memset(buf72,0,sizeof buf72); - memset(buf82,0,sizeof buf82); - } - - - plist_id = H5Pcreate(H5P_DATASET_CREATE); - status = H5Pset_fill_value(plist_id, H5T_NATIVE_INT, &fillvalue); - space_id = H5Screate_simple(2,dims2,NULL); - dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id); - status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72); - status = H5Pclose(plist_id); - status = H5Dclose(dset_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_FLOAT - *------------------------------------------------------------------------- - */ - - write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - -/*------------------------------------------------------------------------- - * 3D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf13,'z',sizeof buf13); - } - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id,STR_SIZE); - write_dset(loc_id,3,dims3,"string3D",type_id,buf13); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf23[i][j][k]=0; - else buf23[i][j][k]=n++; - } - } - } - - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf33[i][j][k].a=0; - buf33[i][j][k].b=0; - } - else { - buf33[i][j][k].a=n++; - buf33[i][j][k].b=n++; - } - } - } - } - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,3,dims3,"compound3D",type_id,buf33); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) - status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,3,dims3,"enum3D",type_id,0); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - int l; - buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; - else ((int *)buf53[i][j][k].p)[l] = n++; - } - } - } - - space_id = H5Screate_simple(3,dims3,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - - n=1; - for (i = 0; i < 24; i++) { - for (j = 0; j < (int)dimarray[0]; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; - } - } - - type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL); - write_dset(loc_id,3,dims3,"array3D",type_id,buf63); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0; - } - else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; - } - } - } - } - write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); -} - - -/*------------------------------------------------------------------------- - * Check all HDF5 classes - * H5T_INTEGER, H5T_FLOAT - * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, - * H5T_ENUM, H5T_VLEN, H5T_ARRAY - *------------------------------------------------------------------------- - */ - - -int test_dsetall(const char *file, - int make_diffs /* flag to modify data buffers */) -{ - hid_t file_id; - hid_t dset_id; - hid_t group_id; - hid_t space_id; - hsize_t dims[1]={2}; - herr_t status; - int buf[2]={1,2}; - - if (make_diffs) - { - memset(buf,0,sizeof buf); - } - - /* Create a file */ - if ((file_id = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) - return -1; - - /* Create a 1D dataset */ - space_id = H5Screate_simple(1,dims,NULL); - dset_id = H5Dcreate(file_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf); - status = H5Sclose(space_id); - assert(status>=0); - - /* Create a group */ - group_id = H5Gcreate(file_id,"g1",0); - -/*------------------------------------------------------------------------- - * write a series of datasets on the group - *------------------------------------------------------------------------- - */ - - write_dset_in(group_id,"/dset",file_id,make_diffs); - - /* Close */ - status = H5Dclose(dset_id); - assert(status>=0); - status = H5Gclose(group_id); - assert(status>=0); - - /* Close file */ - status = H5Fclose(file_id); - assert(status>=0); - return status; -} - - - diff --git a/tools/h5diff/testh5diff_main.c b/tools/h5diff/testh5diff_main.c deleted file mode 100644 index 8480675..0000000 --- a/tools/h5diff/testh5diff_main.c +++ /dev/null @@ -1,36 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "testh5diff.h" - - - - -int main(int UNUSED argc, const UNUSED char *argv[]) -{ - - test_basic ("file1.h5","file2.h5"); - test_types ("file3.h5",NULL); - test_native("file4.h5",NULL); - - /* generate 2 files with attribute differences */ - test_attr("file5.h5",0); - test_attr("file6.h5",1); - - /* generate 2 files with all datatype differences */ - test_dsetall("file7.h5",0); - test_dsetall("file8.h5",1); - return 0; -} - diff --git a/tools/h5diff/testh5diff_util.c b/tools/h5diff/testh5diff_util.c deleted file mode 100644 index 5e81881..0000000 --- a/tools/h5diff/testh5diff_util.c +++ /dev/null @@ -1,99 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "testh5diff.h" - - -/*------------------------------------------------------------------------- - * Function: write_attr - * - * Purpose: utility function to write an attribute in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -int write_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t type_id, - void *buf) -{ - hid_t attr_id; - hid_t space_id; - herr_t status; - - /* Create a buf space */ - space_id = H5Screate_simple(rank,dims,NULL); - - /* Create the attribute */ - attr_id = H5Acreate(loc_id,attr_name,type_id,space_id,H5P_DEFAULT); - - /* Write the buf */ - if ( buf ) - status = H5Awrite(attr_id,type_id,buf); - - /* Close */ - status = H5Aclose(attr_id); - status = H5Sclose(space_id); - return status; -} - -/*------------------------------------------------------------------------- - * Function: write_dset - * - * Purpose: utility function to create and write a dataset in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *dset_name, - hid_t type_id, - void *buf ) -{ - hid_t dset_id; - hid_t space_id; - herr_t status; - - /* Create a buf space */ - space_id = H5Screate_simple(rank,dims,NULL); - - /* Create a dataset */ - dset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT); - - /* Write the buf */ - if ( buf ) - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf); - - /* Close */ - status = H5Dclose(dset_id); - status = H5Sclose(space_id); - - return status; - -} - diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index f17a364..abf1f74 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -52,7 +52,8 @@ /* local functions */ static void close_obj(H5G_obj_t obj_type, hid_t obj_id); -static int diff_region(hid_t region1_id, hid_t region2_id); +static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, + hid_t region1_id, hid_t region2_id, diff_opt_t *options); static hbool_t is_zero(const void *_mem, size_t size); static int ull2float(unsigned long_long ull_value, float *f_value); @@ -344,8 +345,6 @@ hsize_t diff_datum(void *_mem1, H5G_obj_t obj2_type; hid_t obj1_id; hid_t obj2_id; - H5G_stat_t sb1; - H5G_stat_t sb2; hsize_t nfound=0; /* differences found */ int ret=0; /* check return error */ float f1, f2, per; @@ -606,10 +605,10 @@ hsize_t diff_datum(void *_mem1, iszero1=is_zero(_mem1, H5Tget_size(m_type)); iszero2=is_zero(_mem2, H5Tget_size(m_type)); - if (iszero1==1 && iszero2==1) + if (iszero1==1 || iszero2==1) + { return 0; - else if (iszero1!=iszero2) - return 1; + } else { @@ -628,10 +627,6 @@ hsize_t diff_datum(void *_mem1, ret= -1; if ((obj2_id = H5Rdereference(container2_id, H5R_DATASET_REGION, _mem2))<0) ret= -1; - if (H5Gget_objinfo(obj1_id, ".", FALSE, &sb1)<0) - ret= -1; - if (H5Gget_objinfo(obj2_id, ".", FALSE, &sb2)<0) - ret= -1; if ((region1_id = H5Rget_region(container1_id, H5R_DATASET_REGION, _mem1))<0) ret= -1; if ((region2_id = H5Rget_region(container2_id, H5R_DATASET_REGION, _mem2))<0) @@ -642,10 +637,7 @@ hsize_t diff_datum(void *_mem1, return 0; } - if (diff_region(region1_id,region2_id)) - { - parallel_print("Different region referenced\n"); - } + nfound = diff_region(obj1_id,obj2_id,region1_id,region2_id,options); close_obj(H5G_DATASET,obj1_id); close_obj(H5G_DATASET,obj2_id); @@ -676,7 +668,8 @@ hsize_t diff_datum(void *_mem1, if (obj1_type!=obj2_type) { parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2); - return 1; + options->not_cmp=1; + return 0; } if ((obj1_id = H5Rdereference(container1_id, H5R_OBJECT, _mem1))<0) @@ -688,7 +681,7 @@ hsize_t diff_datum(void *_mem1, return 0; } - /*deep compare */ + /* compare */ switch (obj1_type) { case H5G_DATASET: nfound=diff_datasetid(obj1_id, @@ -1716,29 +1709,97 @@ static void close_obj(H5G_obj_t obj_type, hid_t obj_id) break; } } + +/*------------------------------------------------------------------------- + * Function: print_region_block + * + * Purpose: print start coordinates and opposite corner of a region block + * + * Return: void + * + *------------------------------------------------------------------------- + */ + +static +void print_region_block(int i, hsize_t *ptdata, int ndims) +{ + int j; + + parallel_print(" "); + for (j = 0; j < ndims; j++) + parallel_print("%s%lu", j ? "," : " (", + (unsigned long)ptdata[i * 2 * ndims + j]); + for (j = 0; j < ndims; j++) + parallel_print("%s%lu", j ? "," : ")-(", + (unsigned long)ptdata[i * 2 * ndims + j + ndims]); + parallel_print(")"); + +} + + +/*------------------------------------------------------------------------- + * Function: print_points + * + * Purpose: print points of a region reference + * + * Return: void + * + *------------------------------------------------------------------------- + */ + +static +void print_points(int i, hsize_t *ptdata, int ndims) +{ + int j; + + parallel_print(" "); + for (j = 0; j < ndims; j++) + parallel_print("%s%lu", j ? "," : "(", + (unsigned long)(ptdata[i * ndims + j])); + parallel_print(")"); + +} /*------------------------------------------------------------------------- * Function: diff_region * * Purpose: diff a dataspace region * - * Return: 0, diff not found, 1 found + * Return: number of differences * *------------------------------------------------------------------------- */ -static int diff_region(hid_t region1_id, - hid_t region2_id) +static +hsize_t diff_region(hid_t obj1_id, + hid_t obj2_id, + hid_t region1_id, + hid_t region2_id, + diff_opt_t *options) { - hssize_t nblocks1, npoints1; - hssize_t nblocks2, npoints2; - hsize_t alloc_size; - hsize_t *ptdata1; - hsize_t *ptdata2; - int ndims1 = H5Sget_simple_extent_ndims(region1_id); - int ndims2 = H5Sget_simple_extent_ndims(region2_id); - int ret=0; + hssize_t nblocks1, npoints1; + hssize_t nblocks2, npoints2; + H5G_stat_t sb1; + H5G_stat_t sb2; + hsize_t alloc_size; + hsize_t *ptdata1; + hsize_t *ptdata2; + int ndims1; + int ndims2; + int i, j, ret; + haddr_t objno1, objno2; /* compact form of object's location */ + hsize_t nfound_b=0; /* block differences found */ + hsize_t nfound_p=0; /* point differences found */ + + ndims1 = H5Sget_simple_extent_ndims(region1_id); + ndims2 = H5Sget_simple_extent_ndims(region2_id); + + H5Gget_objinfo(obj1_id, ".", FALSE, &sb1); + H5Gget_objinfo(obj2_id, ".", FALSE, &sb2); + + objno1 = (haddr_t)sb1.objno[0] | ((haddr_t)sb1.objno[1] << (8 * sizeof(long))); + objno2 = (haddr_t)sb2.objno[0] | ((haddr_t)sb2.objno[1] << (8 * sizeof(long))); /* * These two functions fail if the region does not have blocks or points, @@ -1752,11 +1813,17 @@ static int diff_region(hid_t region1_id, npoints1 = H5Sget_select_elem_npoints(region1_id); npoints2 = H5Sget_select_elem_npoints(region2_id); } H5E_END_TRY; - + if (nblocks1!=nblocks2 || npoints1!=npoints2 || ndims1!=ndims2) - return 1; - - /* compare block information */ + { + options->not_cmp=1; + return 0; + } + +/*------------------------------------------------------------------------- + * compare block information + *------------------------------------------------------------------------- + */ if (nblocks1 > 0) { @@ -1771,32 +1838,50 @@ static int diff_region(hid_t region1_id, H5_CHECK_OVERFLOW(nblocks2, hssize_t, hsize_t); H5Sget_select_hyper_blocklist(region2_id, (hsize_t)0, (hsize_t)nblocks2, ptdata2); - ret=HDmemcmp(ptdata1,ptdata2,(size_t)alloc_size); - -#if defined (H5DIFF_DEBUG) for (i = 0; i < nblocks1; i++) { - int j; - /* start coordinates and opposite corner */ for (j = 0; j < ndims1; j++) - parallel_print("%s%lu", j ? "," : "(", - (unsigned long)ptdata1[i * 2 * ndims1 + j]); - - for (j = 0; j < ndims1; j++) - parallel_print("%s%lu", j ? "," : ")-(", - (unsigned long)ptdata1[i * 2 * ndims1 + j + ndims1]); - - parallel_print(")\n"); + { + hsize_t start1, start2, end1, end2; + start1 = ptdata1[i * 2 * ndims1 + j]; + start2 = ptdata2[i * 2 * ndims1 + j]; + end1 = ptdata1[i * 2 * ndims1 + j + ndims1]; + end2 = ptdata2[i * 2 * ndims1 + j + ndims1]; + if (start1 != start2 || end1 != end2) + { + nfound_b++; + } + } } -#endif - + + /* print differences if found */ + if (nfound_b) + { + parallel_print("Referenced dataset %lu %lu\n", + (unsigned long)objno1,(unsigned long)objno2); + parallel_print("------------------------------------------------------------\n"); + + parallel_print("Region blocks\n"); + for (i = 0; i < nblocks1; i++) + { + parallel_print("block #%d", i); + print_region_block(i, ptdata1, ndims1); + print_region_block(i, ptdata2, ndims1); + parallel_print("\n"); + + } + } HDfree(ptdata1); HDfree(ptdata2); } - - /* Print point information */ + +/*------------------------------------------------------------------------- + * compare point information + *------------------------------------------------------------------------- + */ + if (npoints1 > 0) { alloc_size = npoints1 * ndims1 * sizeof(ptdata1[0]); @@ -1809,9 +1894,45 @@ static int diff_region(hid_t region1_id, ptdata2 = malloc((size_t)alloc_size); H5_CHECK_OVERFLOW(npoints1,hssize_t,hsize_t); H5Sget_select_elem_pointlist(region2_id, (hsize_t)0, (hsize_t)npoints2, ptdata2); - - ret=HDmemcmp(ptdata1,ptdata2,(size_t)alloc_size); - + + for (i = 0; i < npoints1; i++) + { + hsize_t pt1, pt2; + + for (j = 0; j < ndims1; j++) + { + pt1 = ptdata1[i * ndims1 + j]; + pt2 = ptdata2[i * ndims1 + j]; + if (pt1 != pt2) + nfound_p++; + } + } + + if (nfound_p) + { + parallel_print("Region points\n"); + for (i = 0; i < npoints1; i++) + { + hsize_t pt1, pt2; + int diff=0; + for (j = 0; j < ndims1; j++) + { + pt1 = ptdata1[i * ndims1 + j]; + pt2 = ptdata2[i * ndims1 + j]; + if (pt1 != pt2) + diff=1; + } + if (diff) + { + parallel_print("point #%d", i); + print_points(i, ptdata1, ndims1); + print_points(i, ptdata2, ndims1); + parallel_print("\n"); + } + } + } + + #if defined (H5DIFF_DEBUG) for (i = 0; i < npoints1; i++) { @@ -1833,7 +1954,7 @@ static int diff_region(hid_t region1_id, HDfree(ptdata2); } - return ret; + return (nfound_p + nfound_b)/2; } diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 3fd280c..ad49b1a 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -26,17 +26,20 @@ *------------------------------------------------------------------------- */ #if defined (H5DIFF_DEBUG) -void print_sizes( const char *obj1, const char *obj2, - hid_t f_type1, hid_t f_type2, - hid_t m_type1, hid_t m_type2 ) +void print_sizes( const char *obj1, + const char *obj2, + hid_t f_tid1, + hid_t f_tid2, + hid_t m_tid1, + hid_t m_tid2 ) { size_t f_size1, f_size2; /* size of type in file */ size_t m_size1, m_size2; /* size of type in memory */ - f_size1 = H5Tget_size( f_type1 ); - f_size2 = H5Tget_size( f_type2 ); - m_size1 = H5Tget_size( m_type1 ); - m_size2 = H5Tget_size( m_type2 ); + f_size1 = H5Tget_size( f_tid1 ); + f_size2 = H5Tget_size( f_tid2 ); + m_size1 = H5Tget_size( m_tid1 ); + m_size2 = H5Tget_size( m_tid2 ); printf("\n"); printf("------------------\n"); @@ -46,23 +49,23 @@ void print_sizes( const char *obj1, const char *obj2, printf("sizeof(long) %u\n", sizeof(long) ); printf("<%s> ------------------\n", obj1); printf("type on file "); - print_type(f_type1); + print_type(f_tid1); printf("\n"); printf("size on file %u\n", f_size1 ); printf("type on memory "); - print_type(m_type1); + print_type(m_tid1); printf("\n"); printf("size on memory %u\n", m_size1 ); printf("<%s> ------------------\n", obj2); printf("type on file "); - print_type(f_type2); + print_type(f_tid2); printf("\n"); printf("size on file %u\n", f_size2 ); printf("type on memory "); - print_type(m_type2); + print_type(m_tid2); printf("\n"); printf("size on memory %u\n", m_size2 ); printf("\n"); @@ -91,10 +94,10 @@ hsize_t diff_dataset( hid_t file1_id, const char *obj2_name, diff_opt_t *options ) { - hid_t dset1_id=-1; - hid_t dset2_id=-1; - hid_t dcpl1_id=-1; - hid_t dcpl2_id=-1; + hid_t did1; + hid_t did2; + hid_t dcpl1; + hid_t dcpl2; hsize_t nfound=0; /*------------------------------------------------------------------------- @@ -104,12 +107,12 @@ hsize_t diff_dataset( hid_t file1_id, /* disable error reporting */ H5E_BEGIN_TRY { /* Open the datasets */ - if ( (dset1_id = H5Dopen(file1_id,obj1_name)) < 0 ) + if ( (did1 = H5Dopen(file1_id,obj1_name)) < 0 ) { printf("Cannot open dataset <%s>\n", obj1_name ); goto error; } - if ( (dset2_id = H5Dopen(file2_id,obj2_name)) < 0 ) + if ( (did2 = H5Dopen(file2_id,obj2_name)) < 0 ) { printf("Cannot open dataset <%s>\n", obj2_name ); goto error; @@ -118,9 +121,9 @@ hsize_t diff_dataset( hid_t file1_id, } H5E_END_TRY; - if ((dcpl1_id=H5Dget_create_plist(dset1_id))<0) + if ((dcpl1=H5Dget_create_plist(did1))<0) goto error; - if ((dcpl2_id=H5Dget_create_plist(dset2_id))<0) + if ((dcpl2=H5Dget_create_plist(did2))<0) goto error; /*------------------------------------------------------------------------- @@ -130,14 +133,14 @@ hsize_t diff_dataset( hid_t file1_id, * 2) the internal filters might be turned off *------------------------------------------------------------------------- */ - if ((h5tools_canreadf((options->m_verbose?obj1_name:NULL),dcpl1_id)==1) && - (h5tools_canreadf((options->m_verbose?obj2_name:NULL),dcpl2_id)==1)) + if ((h5tools_canreadf((options->m_verbose?obj1_name:NULL),dcpl1)==1) && + (h5tools_canreadf((options->m_verbose?obj2_name:NULL),dcpl2)==1)) { - nfound=diff_datasetid(dset1_id, - dset2_id, - obj1_name, - obj2_name, - options); + nfound=diff_datasetid(did1, + did2, + obj1_name, + obj2_name, + options); } /*------------------------------------------------------------------------- * close @@ -145,10 +148,10 @@ hsize_t diff_dataset( hid_t file1_id, */ /* disable error reporting */ H5E_BEGIN_TRY { - H5Pclose(dcpl1_id); - H5Pclose(dcpl2_id); - H5Dclose(dset1_id); - H5Dclose(dset2_id); + H5Pclose(dcpl1); + H5Pclose(dcpl2); + H5Dclose(did1); + H5Dclose(did2); /* enable error reporting */ } H5E_END_TRY; @@ -158,10 +161,10 @@ error: options->err_stat=1; /* disable error reporting */ H5E_BEGIN_TRY { - H5Pclose(dcpl1_id); - H5Pclose(dcpl2_id); - H5Dclose(dset1_id); - H5Dclose(dset2_id); + H5Pclose(dcpl1); + H5Pclose(dcpl2); + H5Dclose(did1); + H5Dclose(did2); /* enable error reporting */ } H5E_END_TRY; @@ -182,21 +185,28 @@ error: * *------------------------------------------------------------------------- */ -hsize_t diff_datasetid( hid_t dset1_id, - hid_t dset2_id, +hsize_t diff_datasetid( hid_t did1, + hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *options ) { - hid_t space1_id =-1; - hid_t space2_id =-1; - hid_t f_type1=-1, f_type2=-1; /* file data type */ - hid_t m_type1=-1, m_type2=-1; /* memory data type */ - size_t m_size1, m_size2; /* size of type in memory */ - H5T_sign_t sign1, sign2; /* sign of type */ - int rank1, rank2; - void *buf1=NULL, *buf2=NULL; - hsize_t nelmts1, nelmts2; + hid_t sid1; + hid_t sid2; + hid_t f_tid1; + hid_t f_tid2; /* file data type */ + hid_t m_tid1; + hid_t m_tid2; /* memory data type */ + size_t m_size1; + size_t m_size2; /* size of type in memory */ + H5T_sign_t sign1; + H5T_sign_t sign2; /* sign of type */ + int rank1; + int rank2; + void *buf1=NULL; + void *buf2=NULL; + hsize_t nelmts1; + hsize_t nelmts2; hsize_t dims1[H5S_MAX_RANK]; hsize_t dims2[H5S_MAX_RANK]; hsize_t maxdim1[H5S_MAX_RANK]; @@ -210,27 +220,27 @@ hsize_t diff_datasetid( hid_t dset1_id, int i; /* Get the dataspace handle */ - if ( (space1_id = H5Dget_space(dset1_id)) < 0 ) + if ( (sid1 = H5Dget_space(did1)) < 0 ) goto error; /* Get rank */ - if ( (rank1 = H5Sget_simple_extent_ndims(space1_id)) < 0 ) + if ( (rank1 = H5Sget_simple_extent_ndims(sid1)) < 0 ) goto error; /* Get the dataspace handle */ - if ( (space2_id = H5Dget_space(dset2_id)) < 0 ) + if ( (sid2 = H5Dget_space(did2)) < 0 ) goto error; /* Get rank */ - if ( (rank2 = H5Sget_simple_extent_ndims(space2_id)) < 0 ) + if ( (rank2 = H5Sget_simple_extent_ndims(sid2)) < 0 ) goto error; /* Get dimensions */ - if ( H5Sget_simple_extent_dims(space1_id,dims1,maxdim1) < 0 ) + if ( H5Sget_simple_extent_dims(sid1,dims1,maxdim1) < 0 ) goto error; /* Get dimensions */ - if ( H5Sget_simple_extent_dims(space2_id,dims2,maxdim2) < 0 ) + if ( H5Sget_simple_extent_dims(sid2,dims2,maxdim2) < 0 ) goto error; /*------------------------------------------------------------------------- @@ -239,11 +249,11 @@ hsize_t diff_datasetid( hid_t dset1_id, */ /* Get the data type */ - if ( (f_type1 = H5Dget_type(dset1_id)) < 0 ) + if ( (f_tid1 = H5Dget_type(did1)) < 0 ) goto error; /* Get the data type */ - if ( (f_type2 = H5Dget_type(dset2_id)) < 0 ) + if ( (f_tid2 = H5Dget_type(did2)) < 0 ) goto error; @@ -252,8 +262,8 @@ hsize_t diff_datasetid( hid_t dset1_id, *------------------------------------------------------------------------- */ - storage_size1=H5Dget_storage_size(dset1_id); - storage_size2=H5Dget_storage_size(dset2_id); + storage_size1=H5Dget_storage_size(did1); + storage_size2=H5Dget_storage_size(did2); if (storage_size1<=0 && storage_size2<=0) { if (options->m_verbose && obj1_name && obj2_name) @@ -268,8 +278,8 @@ hsize_t diff_datasetid( hid_t dset1_id, *------------------------------------------------------------------------- */ - if (diff_can_type(f_type1, - f_type2, + if (diff_can_type(f_tid1, + f_tid2, rank1, rank2, dims1, @@ -288,18 +298,18 @@ hsize_t diff_datasetid( hid_t dset1_id, * memory type and sizes *------------------------------------------------------------------------- */ - if ((m_type1=h5tools_get_native_type(f_type1))<0) + if ((m_tid1=h5tools_get_native_type(f_tid1))<0) goto error; - if ((m_type2=h5tools_get_native_type(f_type2))<0) + if ((m_tid2=h5tools_get_native_type(f_tid2))<0) goto error; - m_size1 = H5Tget_size( m_type1 ); - m_size2 = H5Tget_size( m_type2 ); + m_size1 = H5Tget_size( m_tid1 ); + m_size2 = H5Tget_size( m_tid2 ); #if defined (H5DIFF_DEBUG) if (obj1_name) - print_sizes(obj1_name,obj2_name,f_type1,f_type2,m_type1,m_type2); + print_sizes(obj1_name,obj2_name,f_tid1,f_tid2,m_tid1,m_tid2); #endif /*------------------------------------------------------------------------- @@ -307,8 +317,8 @@ hsize_t diff_datasetid( hid_t dset1_id, *------------------------------------------------------------------------- */ - sign1=H5Tget_sign(m_type1); - sign2=H5Tget_sign(m_type2); + sign1=H5Tget_sign(m_tid1); + sign2=H5Tget_sign(m_tid2); if ( sign1 != sign2 ) { if (options->m_verbose && obj1_name) { @@ -355,26 +365,26 @@ hsize_t diff_datasetid( hid_t dset1_id, { if ( m_size1 < m_size2 ) { - H5Tclose(m_type1); + H5Tclose(m_tid1); - if ((m_type1=h5tools_get_native_type(f_type2))<0) + if ((m_tid1=h5tools_get_native_type(f_tid2))<0) goto error; - m_size1 = H5Tget_size( m_type1 ); + m_size1 = H5Tget_size( m_tid1 ); } else { - H5Tclose(m_type2); + H5Tclose(m_tid2); - if ((m_type2=h5tools_get_native_type(f_type1))<0) + if ((m_tid2=h5tools_get_native_type(f_tid1))<0) goto error; - m_size2 = H5Tget_size( m_type2 ); + m_size2 = H5Tget_size( m_tid2 ); } #if defined (H5DIFF_DEBUG) printf("WARNING: Size was upgraded\n"); if (obj1_name) - print_sizes(obj1_name,obj2_name,f_type1,f_type2,m_type1,m_type2); + print_sizes(obj1_name,obj2_name,f_tid1,f_tid2,m_tid1,m_tid2); #endif } assert(m_size1==m_size2); @@ -394,10 +404,10 @@ hsize_t diff_datasetid( hid_t dset1_id, *------------------------------------------------------------------------- */ - if ( H5Dread(dset1_id,m_type1,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf1) < 0 ) + if ( H5Dread(did1,m_tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf1) < 0 ) goto error; - if ( H5Dread(dset2_id,m_type2,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf2) < 0 ) + if ( H5Dread(did2,m_tid2,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf2) < 0 ) goto error; /*------------------------------------------------------------------------- @@ -418,9 +428,9 @@ hsize_t diff_datasetid( hid_t dset1_id, options, name1, name2, - m_type1, - dset1_id, - dset2_id); + m_tid1, + did1, + did2); /*------------------------------------------------------------------------- * compare attributes * the if condition refers to cases when the dataset is a referenced object @@ -428,7 +438,7 @@ hsize_t diff_datasetid( hid_t dset1_id, */ if (obj1_name) - diff_attr(dset1_id,dset2_id,obj1_name,obj2_name,options); + diff_attr(did1,did2,obj1_name,obj2_name,options); }/*cmp*/ @@ -443,12 +453,12 @@ hsize_t diff_datasetid( hid_t dset1_id, /* close */ /* disable error reporting */ H5E_BEGIN_TRY { - H5Sclose(space1_id); - H5Sclose(space2_id); - H5Tclose(f_type1); - H5Tclose(f_type2); - H5Tclose(m_type1); - H5Tclose(m_type2); + H5Sclose(sid1); + H5Sclose(sid2); + H5Tclose(f_tid1); + H5Tclose(f_tid2); + H5Tclose(m_tid1); + H5Tclose(m_tid2); /* enable error reporting */ } H5E_END_TRY; @@ -461,12 +471,12 @@ error: /* close */ /* disable error reporting */ H5E_BEGIN_TRY { - H5Sclose(space1_id); - H5Sclose(space2_id); - H5Tclose(f_type1); - H5Tclose(f_type2); - H5Tclose(m_type1); - H5Tclose(m_type2); + H5Sclose(sid1); + H5Sclose(sid2); + H5Tclose(f_tid1); + H5Tclose(f_tid2); + H5Tclose(m_tid1); + H5Tclose(m_tid2); /* enable error reporting */ } H5E_END_TRY; @@ -490,8 +500,8 @@ error: *------------------------------------------------------------------------- */ -int diff_can_type( hid_t f_type1, /* file data type */ - hid_t f_type2, /* file data type */ +int diff_can_type( hid_t f_tid1, /* file data type */ + hid_t f_tid2, /* file data type */ int rank1, int rank2, hsize_t *dims1, @@ -515,10 +525,10 @@ int diff_can_type( hid_t f_type1, /* file data type */ *------------------------------------------------------------------------- */ - if ((tclass1=H5Tget_class(f_type1))<0) + if ((tclass1=H5Tget_class(f_tid1))<0) return -1; - if ((tclass2=H5Tget_class(f_type2))<0) + if ((tclass2=H5Tget_class(f_tid2))<0) return -1; if ( tclass1 != tclass2 ) @@ -564,14 +574,14 @@ int diff_can_type( hid_t f_type1, /* file data type */ *------------------------------------------------------------------------- */ - if ( (H5Tequal(f_type1, f_type2)==0) && options->m_verbose && obj1_name) + if ( (H5Tequal(f_tid1, f_tid2)==0) && options->m_verbose && obj1_name) { printf("warning: different storage datatype\n"); printf("<%s> has file datatype ", obj1_name); - print_type(f_type1); + print_type(f_tid1); printf("\n"); printf("<%s> has file datatype ", obj2_name); - print_type(f_type2); + print_type(f_tid2); printf("\n"); } diff --git a/tools/testfiles/file7.h5 b/tools/testfiles/file7.h5 index 18dd816..4b6aa3c 100644 Binary files a/tools/testfiles/file7.h5 and b/tools/testfiles/file7.h5 differ diff --git a/tools/testfiles/file8.h5 b/tools/testfiles/file8.h5 index 643483b..1229ea7 100644 Binary files a/tools/testfiles/file8.h5 and b/tools/testfiles/file8.h5 differ diff --git a/tools/testfiles/h5diff_80.txt b/tools/testfiles/h5diff_80.txt index a3a5b15..2e0c6ac 100644 --- a/tools/testfiles/h5diff_80.txt +++ b/tools/testfiles/h5diff_80.txt @@ -5,6 +5,7 @@ Expected output for 'h5diff file7.h5 file8.h5 -v' file1 file2 --------------------------------------- x x /dset + x x /dsetref x x /g1 x x /g1/array x x /g1/array2D @@ -36,6 +37,7 @@ file1 file2 x x /g1/vlen x x /g1/vlen2D x x /g1/vlen3D + x x /refreg Dataset: and position dset dset difference @@ -43,6 +45,8 @@ position dset dset difference [ 0 ] 1 0 1 [ 1 ] 2 0 2 2 differences found +Dataset: and +0 differences found Group: and 0 differences found Dataset: and @@ -710,6 +714,16 @@ position vlen3D vlen3D difference [ 3 2 1 ] 58 0 58 [ 3 2 1 ] 59 0 59 59 differences found +Dataset: and +Referenced dataset 5888 5888 +------------------------------------------------------------ +Region blocks +block #0 (2,2)-(7,7) (0,0)-(2,2) +Region points +point #0 (6,9) (5,8) +point #1 (2,2) (3,3) +point #2 (8,4) (7,5) +4 differences found Group: and 0 differences found -------------------------------- -- cgit v0.12