/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This example shows how to work with extendible dataset. * In the current version of the library dataset MUST be * chunked. * */ #include #include using std::cout; using std::endl; #include #include "H5Cpp.h" using namespace H5; const H5std_string FILE_NAME("SDSextendible.h5"); const H5std_string DATASET_NAME("ExtendibleArray"); const int NX = 10; const int NY = 5; const int RANK = 2; int main(void) { /* * Try block to detect exceptions raised by any of the calls inside it */ try { /* * Turn off the auto-printing when failure occurs so that we can * handle the errors appropriately */ Exception::dontPrint(); /* * Create the data space with unlimited dimensions. */ hsize_t dims[2] = {3, 3}; // dataset dimensions at creation hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; DataSpace mspace1(RANK, dims, maxdims); /* * Create a new file. If file exists its contents will be overwritten. */ H5File file(FILE_NAME, H5F_ACC_TRUNC); /* * Modify dataset creation properties, i.e. enable chunking. */ DSetCreatPropList cparms; hsize_t chunk_dims[2] = {2, 5}; cparms.setChunk(RANK, chunk_dims); /* * Set fill value for the dataset */ int fill_val = 0; cparms.setFillValue(PredType::NATIVE_INT, &fill_val); /* * Create a new dataset within the file using cparms * creation properties. */ DataSet dataset = file.createDataSet(DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms); /* * Extend the dataset. This call assures that dataset is at least 3 x 3. */ hsize_t size[2]; size[0] = 3; size[1] = 3; dataset.extend(size); /* * Select a hyperslab. */ DataSpace fspace1 = dataset.getSpace(); hsize_t offset[2]; offset[0] = 0; offset[1] = 0; hsize_t dims1[2] = {3, 3}; /* data1 dimensions */ fspace1.selectHyperslab(H5S_SELECT_SET, dims1, offset); /* * Write the data to the hyperslab. */ int data1[3][3] = {{1, 1, 1}, /* data to write */ {1, 1, 1}, {1, 1, 1}}; dataset.write(data1, PredType::NATIVE_INT, mspace1, fspace1); /* * Extend the dataset. Dataset becomes 10 x 3. */ hsize_t dims2[2] = {7, 1}; /* data2 dimensions */ dims[0] = dims1[0] + dims2[0]; size[0] = dims[0]; size[1] = dims[1]; dataset.extend(size); /* * Select a hyperslab. */ DataSpace fspace2 = dataset.getSpace(); offset[0] = 3; offset[1] = 0; fspace2.selectHyperslab(H5S_SELECT_SET, dims2, offset); /* * Define memory space */ DataSpace mspace2(RANK, dims2); /* * Write the data to the hyperslab. */ int data2[7] = {2, 2, 2, 2, 2, 2, 2}; dataset.write(data2, PredType::NATIVE_INT, mspace2, fspace2); /* * Extend the dataset. Dataset becomes 10 x 5. */ hsize_t dims3[2] = {2, 2}; /* data3 dimensions */ dims[1] = dims1[1] + dims3[1]; size[0] = dims[0]; size[1] = dims[1]; dataset.extend(size); /* * Select a hyperslab */ DataSpace fspace3 = dataset.getSpace(); offset[0] = 0; offset[1] = 3; fspace3.selectHyperslab(H5S_SELECT_SET, dims3, offset); /* * Define memory space. */ DataSpace mspace3(RANK, dims3); /* * Write the data to the hyperslab. */ int data3[2][2] = {{3, 3}, {3, 3}}; dataset.write(data3, PredType::NATIVE_INT, mspace3, fspace3); /* * Read the data from this dataset and display it. */ int i, j; int data_out[NX][NY]; for (i = 0; i < NX; i++) { for (j = 0; j < NY; j++) data_out[i][j] = 0; } dataset.read(data_out, PredType::NATIVE_INT); /* * Resulting dataset * * 1 1 1 3 3 * 1 1 1 3 3 * 1 1 1 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 */ /* * Display the result. */ for (i = 0; i < NX; i++) { for (j = 0; j < NY; j++) cout << data_out[i][j] << " "; cout << endl; } } // end of try block // catch failure caused by the H5File operations catch (FileIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSet operations catch (DataSetIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSpace operations catch (DataSpaceIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSpace operations catch (DataTypeIException error) { error.printErrorStack(); return -1; } return 0; }