/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This example shows how to work with extendible dataset. * In the current version of the library dataset MUST be * chunked. * */ #ifdef OLD_HEADER_FILENAME #include #else #include #endif #include #ifndef H5_NO_NAMESPACE #ifndef H5_NO_STD using std::cout; using std::endl; #endif // H5_NO_STD #endif #include "H5Cpp.h" #ifndef H5_NO_NAMESPACE using namespace H5; #endif const H5std_string FILE_NAME( "SDSextendible.h5" ); const H5std_string DATASET_NAME( "ExtendibleArray" ); const int NX = 10; const int NY = 5; const int RANK = 2; int main (void) { /* * Try block to detect exceptions raised by any of the calls inside it */ try { /* * Turn off the auto-printing when failure occurs so that we can * handle the errors appropriately */ Exception::dontPrint(); /* * Create the data space with unlimited dimensions. */ hsize_t dims[2] = { 3, 3}; // dataset dimensions at creation hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; DataSpace mspace1( RANK, dims, maxdims); /* * Create a new file. If file exists its contents will be overwritten. */ H5File file( FILE_NAME, H5F_ACC_TRUNC ); /* * Modify dataset creation properties, i.e. enable chunking. */ DSetCreatPropList cparms; hsize_t chunk_dims[2] ={2, 5}; cparms.setChunk( RANK, chunk_dims ); /* * Set fill value for the dataset */ int fill_val = 0; cparms.setFillValue( PredType::NATIVE_INT, &fill_val); /* * Create a new dataset within the file using cparms * creation properties. */ DataSet dataset = file.createDataSet( DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms); /* * Extend the dataset. This call assures that dataset is at least 3 x 3. */ hsize_t size[2]; size[0] = 3; size[1] = 3; dataset.extend( size ); /* * Select a hyperslab. */ DataSpace fspace1 = dataset.getSpace (); hsize_t offset[2]; offset[0] = 0; offset[1] = 0; hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */ fspace1.selectHyperslab( H5S_SELECT_SET, dims1, offset ); /* * Write the data to the hyperslab. */ int data1[3][3] = { {1, 1, 1}, /* data to write */ {1, 1, 1}, {1, 1, 1} }; dataset.write( data1, PredType::NATIVE_INT, mspace1, fspace1 ); /* * Extend the dataset. Dataset becomes 10 x 3. */ hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */ dims[0] = dims1[0] + dims2[0]; size[0] = dims[0]; size[1] = dims[1]; dataset.extend( size ); /* * Select a hyperslab. */ DataSpace fspace2 = dataset.getSpace (); offset[0] = 3; offset[1] = 0; fspace2.selectHyperslab( H5S_SELECT_SET, dims2, offset ); /* * Define memory space */ DataSpace mspace2( RANK, dims2 ); /* * Write the data to the hyperslab. */ int data2[7] = { 2, 2, 2, 2, 2, 2, 2}; dataset.write( data2, PredType::NATIVE_INT, mspace2, fspace2 ); /* * Extend the dataset. Dataset becomes 10 x 5. */ hsize_t dims3[2] = { 2, 2}; /* data3 dimensions */ dims[1] = dims1[1] + dims3[1]; size[0] = dims[0]; size[1] = dims[1]; dataset.extend( size ); /* * Select a hyperslab */ DataSpace fspace3 = dataset.getSpace (); offset[0] = 0; offset[1] = 3; fspace3.selectHyperslab( H5S_SELECT_SET, dims3, offset ); /* * Define memory space. */ DataSpace mspace3( RANK, dims3 ); /* * Write the data to the hyperslab. */ int data3[2][2] = { {3, 3}, {3, 3} }; dataset.write( data3, PredType::NATIVE_INT, mspace3, fspace3 ); /* * Read the data from this dataset and display it. */ int i, j; int data_out[NX][NY]; for (i = 0; i < NX; i++) { for (j = 0; j < NY; j++) data_out[i][j] = 0; } dataset.read( data_out, PredType::NATIVE_INT ); /* * Resulting dataset * * 1 1 1 3 3 * 1 1 1 3 3 * 1 1 1 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 * 2 0 0 0 0 */ /* * Display the result. */ for (i=0; i < NX; i++) { for(j=0; j < NY; j++) cout << data_out[i][j] << " "; cout << endl; } } // end of try block // catch failure caused by the H5File operations catch( FileIException error ) { error.printError(); return -1; } // catch failure caused by the DataSet operations catch( DataSetIException error ) { error.printError(); return -1; } // catch failure caused by the DataSpace operations catch( DataSpaceIException error ) { error.printError(); return -1; } // catch failure caused by the DataSpace operations catch( DataTypeIException error ) { error.printError(); return -1; } return 0; }