/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include #include "H5Include.h" #include "H5Exception.h" #include "H5IdComponent.h" #include "H5PropList.h" #include "H5Location.h" #include "H5Object.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" #include "H5FaccProp.h" #include "H5FcreatProp.h" #include "H5CommonFG.h" #include "H5DataType.h" #include "H5DataSpace.h" #include "H5AbstractDs.h" #include "H5File.h" #include "H5DataSet.h" #include "H5Attribute.h" #include "H5private.h" // for HDmemset #ifndef H5_NO_NAMESPACE namespace H5 { #endif #ifndef DOXYGEN_SHOULD_SKIP_THIS // userAttrOpWrpr simply interfaces between the user's function and the // C library function H5Aiterate2; used to resolve the different prototype // problem. May be moved to Iterator later. extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name, const H5A_info_t *ainfo, void *op_data) { H5std_string s_attr_name = H5std_string( attr_name ); #ifdef NO_STATIC_CAST UserData4Aiterate* myData = (UserData4Aiterate *) op_data; #else UserData4Aiterate* myData = reinterpret_cast (op_data); #endif myData->op( *myData->location, s_attr_name, myData->opData ); return 0; } //-------------------------------------------------------------------------- // Function: H5Location default constructor (protected) // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Location::H5Location() : IdComponent() {} //-------------------------------------------------------------------------- // Function: H5Location overloaded constructor (protected) // Purpose Creates an H5Location object using the id of an existing HDF5 // object. // Parameters object_id - IN: Id of an existing HDF5 object // Programmer Binh-Minh Ribler - 2000 // *** Deprecation warning *** // This constructor is no longer appropriate because the data member "id" had // been moved to the sub-classes. It will be removed in 1.10 release. If its // removal does not raise any problems in 1.10, it will be removed from 1.8 in // subsequent releases. //-------------------------------------------------------------------------- H5Location::H5Location(const hid_t object_id) : IdComponent() {} //-------------------------------------------------------------------------- // Function: H5Location copy constructor // Purpose: This noop copy constructor is removed as a result of the data // member "id" being moved down to sub-classes. (Mar 2015) ///\param original - IN: H5Location instance to copy // Programmer Binh-Minh Ribler - 2000 // // *** Deprecation warning *** // This constructor is no longer appropriate because the data member "id" had // been moved to the sub-classes. It is removed from 1.8.15 because it is // a noop and it can be generated by the compiler if needed. //-------------------------------------------------------------------------- // H5Location::H5Location(const H5Location& original) : IdComponent() {} #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::createAttribute ///\brief Creates an attribute for a group, dataset, or named datatype. ///\param name - IN: Name of the attribute ///\param data_type - IN: Datatype for the attribute ///\param data_space - IN: Dataspace for the attribute - only simple /// dataspaces are allowed at this time ///\param create_plist - IN: Creation property list - default to /// PropList::DEFAULT ///\return Attribute instance ///\exception H5::AttributeIException ///\par Description /// The attribute name specified in \a name must be unique. /// Attempting to create an attribute with the same name as an /// existing attribute will raise an exception, leaving the /// pre-existing attribute intact. To overwrite an existing /// attribute with a new attribute of the same name, first /// delete the existing one with \c H5Location::removeAttr, then /// recreate it with this function. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Location::createAttribute( const char* name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { hid_t type_id = data_type.getId(); hid_t space_id = data_space.getId(); hid_t plist_id = create_plist.getId(); hid_t attr_id = H5Acreate2(getId(), name, type_id, space_id, plist_id, H5P_DEFAULT ); // If the attribute id is valid, create and return the Attribute object if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return( attr ); } else throw AttributeIException(inMemFunc("createAttribute"), "H5Acreate2 failed"); } //-------------------------------------------------------------------------- // Function: H5Location::createAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Location::createAttribute( const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { return( createAttribute( name.c_str(), data_type, data_space, create_plist )); } //-------------------------------------------------------------------------- // Function: H5Location::openAttribute ///\brief Opens an attribute given its name. ///\param name - IN: Name of the attribute ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Location::openAttribute( const char* name ) const { hid_t attr_id = H5Aopen(getId(), name, H5P_DEFAULT); if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return( attr ); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen failed"); } } //-------------------------------------------------------------------------- // Function: H5Location::openAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Location::openAttribute( const H5std_string& name ) const { return( openAttribute( name.c_str()) ); } //-------------------------------------------------------------------------- // Function: H5Location::openAttribute ///\brief Opens an attribute given its index. ///\param idx - IN: Index of the attribute, a 0-based, non-negative integer ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Location::openAttribute( const unsigned int idx ) const { hid_t attr_id = H5Aopen_by_idx(getId(), ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, static_cast(idx), H5P_DEFAULT, H5P_DEFAULT); if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return(attr); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_by_idx failed"); } } //-------------------------------------------------------------------------- // Function: H5Location::iterateAttrs ///\brief Iterates a user's function over all the attributes of an H5 /// object, which may be a group, dataset or named datatype. ///\param user_op - IN: User's function to operate on each attribute ///\param _idx - IN/OUT: Starting (IN) and ending (OUT) attribute indices ///\param op_data - IN: User's data to pass to user's operator function ///\return Returned value of the last operator if it was non-zero, or /// zero if all attributes were processed ///\exception H5::AttributeIException ///\par Description /// The signature of user_op is /// void (*)(H5::H5Location&, H5std_string, void*). /// For information, please refer to the C layer Reference Manual /// at: /// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5A.html#Annot-Iterate // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Location::iterateAttrs( attr_operator_t user_op, unsigned *_idx, void *op_data ) { // store the user's function and data UserData4Aiterate* userData = new UserData4Aiterate; userData->opData = op_data; userData->op = user_op; userData->location = this; // call the C library routine H5Aiterate2 to iterate the attributes hsize_t idx = _idx ? (hsize_t)*_idx : 0; int ret_value = H5Aiterate2(getId(), H5_INDEX_NAME, H5_ITER_INC, &idx, userAttrOpWrpr, reinterpret_cast(userData)); // release memory delete userData; if( ret_value >= 0 ) { /* Pass back update index value to calling code */ if (_idx) *_idx = static_cast(idx); return( ret_value ); } else // raise exception when H5Aiterate returns a negative value throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate2 failed"); } //-------------------------------------------------------------------------- // Function: H5Location::getNumAttrs ///\brief Returns the number of attributes attached to this HDF5 object. ///\return Number of attributes ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Location::getNumAttrs() const { H5O_info_t oinfo; /* Object info */ if(H5Oget_info(getId(), &oinfo) < 0) throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed"); else return(static_cast(oinfo.num_attrs)); } //-------------------------------------------------------------------------- // Function: H5Location::attrExists ///\brief Checks whether the named attribute exists at this location. ///\param name - IN: Name of the attribute to be queried ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2013 //-------------------------------------------------------------------------- bool H5Location::attrExists(const char* name) const { // Call C routine H5Aexists to determine whether an attribute exists // at this location, which could be specified by a file, group, dataset, // or named datatype. herr_t ret_value = H5Aexists(getId(), name); if( ret_value > 0 ) return true; else if(ret_value == 0) return false; else // Raise exception when H5Aexists returns a negative value throw AttributeIException(inMemFunc("attrExists"), "H5Aexists failed"); } //-------------------------------------------------------------------------- // Function: H5Location::attrExists ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- bool H5Location::attrExists(const H5std_string& name) const { return(attrExists(name.c_str())); } //-------------------------------------------------------------------------- // Function: H5Location::removeAttr ///\brief Removes the named attribute from this object. ///\param name - IN: Name of the attribute to be removed ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Location::removeAttr( const char* name ) const { herr_t ret_value = H5Adelete(getId(), name); if( ret_value < 0 ) throw AttributeIException(inMemFunc("removeAttr"), "H5Adelete failed"); } //-------------------------------------------------------------------------- // Function: H5Location::removeAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Location::removeAttr( const H5std_string& name ) const { removeAttr( name.c_str() ); } //-------------------------------------------------------------------------- // Function: H5Location::renameAttr ///\brief Renames the named attribute from this object. ///\param oldname - IN: Name of the attribute to be renamed ///\param newname - IN: New name ame of the attribute ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Location::renameAttr(const char* oldname, const char* newname) const { herr_t ret_value = H5Arename(getId(), oldname, newname); if (ret_value < 0) throw AttributeIException(inMemFunc("renameAttr"), "H5Arename failed"); } //-------------------------------------------------------------------------- // Function: H5Location::renameAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for the names. // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Location::renameAttr(const H5std_string& oldname, const H5std_string& newname) const { renameAttr (oldname.c_str(), newname.c_str()); } //-------------------------------------------------------------------------- // Function: H5Location::flush ///\brief Flushes all buffers associated with a location to disk. ///\param scope - IN: Specifies the scope of the flushing action, /// which can be either of these values: /// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file /// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file ///\exception H5::Exception ///\par Description /// This location is used to identify the file to be flushed. // Programmer Binh-Minh Ribler - 2012 // Modification // Sep 2012 - BMR // Moved from H5File/H5Object //-------------------------------------------------------------------------- void H5Location::flush(H5F_scope_t scope) const { herr_t ret_value = H5Fflush(getId(), scope); if( ret_value < 0 ) { throw LocationException(inMemFunc("flush"), "H5Fflush failed"); } } //-------------------------------------------------------------------------- // Function: H5Location::getFileName ///\brief Gets the name of the file, in which this HDF5 object belongs. ///\return File name ///\exception H5::LocationException // Programmer Binh-Minh Ribler - Jul, 2004 //-------------------------------------------------------------------------- H5std_string H5Location::getFileName() const { try { return(p_get_file_name()); } catch (LocationException E) { throw FileIException(inMemFunc("getFileName"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Location::setComment ///\brief Sets or resets the comment for an object specified by its name. ///\param name - IN: Name of the object ///\param comment - IN: New comment ///\exception H5::LocationException ///\par Description /// If \a comment is an empty string or a null pointer, the comment /// message is removed from the object. /// Comments should be relatively short, null-terminated, ASCII /// strings. They can be attached to any object that has an /// object header, e.g., data sets, groups, named data types, /// and data spaces, but not symbolic links. // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) // Modification // 2007: QAK modified to use H5O APIs; however the first parameter is // no longer just file or group, this function should be moved // to another class to accommodate attribute, dataset, and named // datatype. - BMR //-------------------------------------------------------------------------- void H5Location::setComment(const char* name, const char* comment) const { herr_t ret_value = H5Oset_comment_by_name(getId(), name, comment, H5P_DEFAULT); if( ret_value < 0 ) throw LocationException(inMemFunc("setComment"), "H5Oset_comment_by_name failed"); } //-------------------------------------------------------------------------- // Function: H5Location::setComment ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an /// \c H5std_string for \a name and \a comment. // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- void H5Location::setComment(const H5std_string& name, const H5std_string& comment) const { setComment(name.c_str(), comment.c_str()); } //-------------------------------------------------------------------------- // Function: H5Location::setComment ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it doesn't take /// an object name. // Programmer Binh-Minh Ribler - Sep 2013 // Modification //-------------------------------------------------------------------------- void H5Location::setComment(const char* comment) const { herr_t ret_value = H5Oset_comment_by_name(getId(), ".", comment, H5P_DEFAULT); if( ret_value < 0 ) throw LocationException(inMemFunc("setComment"), "H5Oset_comment_by_name failed"); } //-------------------------------------------------------------------------- // Function: H5Location::setComment ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an /// \c H5std_string for \a comment. // Programmer Binh-Minh Ribler - Sep 2013 //-------------------------------------------------------------------------- void H5Location::setComment(const H5std_string& comment) const { setComment(comment.c_str()); } //-------------------------------------------------------------------------- // Function: H5Location::removeComment ///\brief Removes the comment from an object specified by its name. ///\param name - IN: Name of the object ///\exception H5::LocationException // Programmer Binh-Minh Ribler - May 2005 (moved from CommonFG, Sep 2013) // 2007: QAK modified to use H5O APIs; however the first parameter is // no longer just file or group, this function should be moved // to another class to accommodate attribute, dataset, and named // datatype. - BMR //-------------------------------------------------------------------------- void H5Location::removeComment(const char* name) const { herr_t ret_value = H5Oset_comment_by_name(getId(), name, NULL, H5P_DEFAULT); if( ret_value < 0 ) throw LocationException(inMemFunc("removeComment"), "H5Oset_comment_by_name failed"); } //-------------------------------------------------------------------------- // Function: H5Location::removeComment ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - May 2005 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- void H5Location::removeComment(const H5std_string& name) const { removeComment (name.c_str()); } //-------------------------------------------------------------------------- // Function: H5Location::getComment ///\brief Retrieves the comment for this location, returning its length. ///\param name - IN: Name of the object ///\param buf_size - IN: Length of the comment to retrieve ///\param comment - OUT: Retrieved comment ///\return Actual length of the comment ///\exception H5::LocationException ///\par Description /// This function retrieves \a buf_size characters of the comment /// including the null terminator. Thus, if the actual length /// of the comment is more than buf_size-1, the retrieved comment /// will be truncated to accommodate the null terminator. // Programmer Binh-Minh Ribler - Mar 2014 //-------------------------------------------------------------------------- ssize_t H5Location::getComment(const char* name, size_t buf_size, char* comment) const { // H5Oget_comment_by_name will get buf_size chars of the comment including // the null terminator ssize_t comment_len; comment_len = H5Oget_comment_by_name(getId(), name, comment, buf_size, H5P_DEFAULT); // If H5Oget_comment_by_name returns a negative value, raise an exception if (comment_len < 0) { throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } // If the comment is longer than the provided buffer size, the C library // will not null terminate it if (static_cast(comment_len) >= buf_size) comment[buf_size-1] = '\0'; // Return the actual comment length, which might be different from buf_size return(comment_len); } //-------------------------------------------------------------------------- // Function: H5Location::getComment ///\brief Returns the comment as \a string for this location, /// returning its length. ///\param name - IN: Name of the object ///\param buf_size - IN: Length of the comment to retrieve, default to 0 ///\return Comment string ///\exception H5::LocationException // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- H5std_string H5Location::getComment(const char* name, size_t buf_size) const { // Initialize string to "", so that if there is no comment, the returned // string will be empty H5std_string comment(""); // Preliminary call to get the comment's length ssize_t comment_len = H5Oget_comment_by_name(getId(), name, NULL, (size_t)0, H5P_DEFAULT); // If H5Oget_comment_by_name returns a negative value, raise an exception if (comment_len < 0) { throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } // If comment exists, calls C routine again to get it else if (comment_len > 0) { size_t tmp_len = buf_size; // If buffer size is not provided, use comment length if (tmp_len == 0) tmp_len = comment_len; // Temporary buffer for char* comment char* comment_C = new char[tmp_len+1]; HDmemset(comment_C, 0, tmp_len+1); // clear buffer // Used overloaded function ssize_t comment_len = getComment(name, tmp_len+1, comment_C); if (comment_len < 0) { delete []comment_C; throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } // Convert the C comment to return comment = comment_C; // Clean up resource delete []comment_C; } // Return the string comment return(comment); } //-------------------------------------------------------------------------- // Function: H5Location::getComment ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- H5std_string H5Location::getComment(const H5std_string& name, size_t buf_size) const { return(getComment(name.c_str(), buf_size)); } #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::p_reference (protected) // Purpose Creates a reference to an HDF5 object or a dataset region. // Parameters // name - IN: Name of the object to be referenced // dataspace - IN: Dataspace with selection // ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const { herr_t ret_value = H5Rcreate(ref, getId(), name, ref_type, space_id); if (ret_value < 0) { throw ReferenceException(inMemFunc("reference"), "H5Rcreate failed"); } } #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::reference ///\brief Creates a reference to an HDF5 object or a dataset region. ///\param ref - IN: Reference pointer ///\param name - IN: Name of the object to be referenced ///\param dataspace - IN: Dataspace with selection ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference. /// \li \c H5R_DATASET_REGION - Reference is a dataset region /// reference. (default) ///\exception H5::ReferenceException ///\note This method is more suitable for a dataset region reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const { try { p_reference(ref, name, dataspace.getId(), ref_type); } catch (ReferenceException E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Location::reference ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an /// \c H5std_string for \a name. ///\param ref - IN: Reference pointer ///\param name - IN: Name of the object to be referenced ///\param dataspace - IN: Dataspace with selection ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference. /// \li \c H5R_DATASET_REGION - Reference is a dataset region /// reference. (default) ///\exception H5::ReferenceException ///\note This method is more suitable for a dataset region reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::reference(void* ref, const H5std_string& name, const DataSpace& dataspace, H5R_type_t ref_type) const { try { p_reference(ref, name.c_str(), dataspace.getId(), ref_type); } catch (ReferenceException E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Location::reference ///\brief This is an overloaded function, provided for your convenience. /// It differs from the above function in that it does not take /// a DataSpace object and the reference type must be specified. ///\param ref - IN: Reference pointer ///\param name - IN: Name of the object to be referenced ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference (default) /// \li \c H5R_DATASET_REGION - Reference is a dataset region ///\exception H5::ReferenceException ///\note This method is more suitable for an object reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::reference(void* ref, const char* name, H5R_type_t ref_type) const { try { p_reference(ref, name, -1, ref_type); } catch (ReferenceException E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Location::reference ///\brief This is an overloaded function, provided for your convenience. /// It differs from the above function in that it takes an /// \c H5std_string for the object's name. ///\param ref - IN: Reference pointer ///\param name - IN: Name of the object to be referenced - \c H5std_string ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference (default) /// \li \c H5R_DATASET_REGION - Reference is a dataset region ///\note This method is more suitable for an object reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_type) const { reference(ref, name.c_str(), ref_type); } #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::p_dereference (protected) // Purpose Dereference a ref into an hdf5 object. // Parameters // loc_id - IN: An hdf5 identifier specifying the location of the // referenced object // ref - IN: Reference pointer // ref_type - IN: Reference type // plist - IN: Property list - default to PropList::DEFAULT // from_func - IN: Name of the calling function // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 // Modification // May 2008 - BMR // Moved from IdComponent. //-------------------------------------------------------------------------- hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const PropList& plist, const char* from_func) { hid_t plist_id; if (p_valid_id(plist.getId())) plist_id = plist.getId(); else plist_id = H5P_DEFAULT; hid_t temp_id = H5Rdereference2(loc_id, plist_id, ref_type, ref); if (temp_id < 0) { throw ReferenceException(inMemFunc(from_func), "H5Rdereference failed"); } return(temp_id); } #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::dereference ///\brief Dereferences a reference into an HDF5 object, given an HDF5 object. ///\param loc - IN: Location of the referenced object ///\param ref - IN: Reference pointer ///\param ref_type - IN: Reference type ///\param plist - IN: Property list - default to PropList::DEFAULT ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 // Modification // May, 2008 // Corrected missing parameters. - BMR //-------------------------------------------------------------------------- void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) { p_setId(p_dereference(loc.getId(), ref, ref_type, plist, "dereference")); } //-------------------------------------------------------------------------- // Function: H5Location::dereference ///\brief Dereferences a reference into an HDF5 object, given an attribute. ///\param attr - IN: Attribute specifying the location of the referenced object ///\param ref - IN: Reference pointer ///\param ref_type - IN: Reference type ///\param plist - IN: Property list - default to PropList::DEFAULT ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 // Modification // May, 2008 // Corrected missing parameters. - BMR //-------------------------------------------------------------------------- void H5Location::dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) { p_setId(p_dereference(attr.getId(), ref, ref_type, plist, "dereference")); } #ifndef H5_NO_DEPRECATED_SYMBOLS //-------------------------------------------------------------------------- // Function: H5Location::getObjType ///\brief Retrieves the type of object that an object reference points to. ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference. /// \li \c H5R_DATASET_REGION - Reference is a dataset region reference. ///\param ref - IN: Reference to query ///\return An object type, which can be one of the following: /// \li \c H5G_UNKNOWN - A failure occurs. (-1) /// \li \c H5G_GROUP - Object is a group. /// \li \c H5G_DATASET - Object is a dataset. /// \li \c H5G_TYPE Object - is a named datatype /// \li \c H5G_LINK - Object is a symbolic link. /// \li \c H5G_UDLINK - Object is a user-defined link. ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 // Modification // Sep 2012: Moved up from H5File, Group, DataSet, and DataType //-------------------------------------------------------------------------- H5G_obj_t H5Location::getObjType(void *ref, H5R_type_t ref_type) const { try { return(p_get_obj_type(ref, ref_type)); } catch (ReferenceException E) { throw ReferenceException(inMemFunc("getObjType"), E.getDetailMsg()); } } #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::p_get_obj_type (protected) // Purpose Retrieves the type of object that an object reference points to. // Parameters // ref - IN: Reference to query // ref_type - IN: Type of reference to query // Return An object type, which can be one of the following: // H5G_UNKNOWN \tFailure occurs (-1) // H5G_GROUP \tObject is a group. // H5G_DATASET \tObject is a dataset. // H5G_TYPE Object \tis a named datatype. // H5G_LINK \tObject is a symbolic link. // H5G_UDLINK \tObject is a user-defined link. // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const { H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref); if (obj_type == H5G_UNKNOWN) { throw ReferenceException(inMemFunc("getObjType"), "H5Rget_obj_type1 failed"); } return(obj_type); } #endif // DOXYGEN_SHOULD_SKIP_THIS #endif /* H5_NO_DEPRECATED_SYMBOLS */ //-------------------------------------------------------------------------- // Function: H5Location::getRefObjType ///\brief Retrieves the type of object that an object reference points to. ///\param ref - IN: Reference to query ///\param ref_type - IN: Type of reference to query, valid values are: /// \li \c H5R_OBJECT - Reference is an object reference. /// \li \c H5R_DATASET_REGION - Reference is a dataset region reference. ///\return An object type, which can be one of the following: /// \li \c H5O_TYPE_UNKNOWN - Unknown object type (-1) /// \li \c H5O_TYPE_GROUP - Object is a group /// \li \c H5O_TYPE_DATASET - Object is a dataset /// \li \c H5O_TYPE_NAMED_DATATYPE - Object is a named datatype /// \li \c H5O_TYPE_NTYPES - Number of different object types ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const { try { return(p_get_ref_obj_type(ref, ref_type)); } catch (ReferenceException E) { throw ReferenceException(inMemFunc("getRefObjType"), E.getDetailMsg()); } } #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::p_get_ref_obj_type (protected) // Purpose Retrieves the type of object that an object reference points to. // Parameters // ref - IN: Reference to query // ref_type - IN: Type of reference to query // Return An object type, which can be one of the following: // H5O_TYPE_UNKNOWN - Unknown object type (-1) // H5O_TYPE_GROUP - Object is a group // H5O_TYPE_DATASET - Object is a dataset // H5O_TYPE_NAMED_DATATYPE - Object is a named datatype // H5O_TYPE_NTYPES - Number of object types // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const { H5O_type_t obj_type = H5O_TYPE_UNKNOWN; herr_t ret_value = H5Rget_obj_type2(getId(), ref_type, ref, &obj_type); if (ret_value < 0) { throw ReferenceException(inMemFunc("getRefObjType"), "H5Rget_obj_type2 failed"); } if (obj_type == H5O_TYPE_UNKNOWN || obj_type >= H5O_TYPE_NTYPES) { throw ReferenceException(inMemFunc("getRefObjType"), "H5Rget_obj_type2 returned invalid type"); } return(obj_type); } //-------------------------------------------------------------------------- // Function: H5Location::getRegion ///\brief Retrieves a dataspace with the region pointed to selected. ///\param ref - IN: Reference to get region of ///\param ref_type - IN: Type of reference to get region of - default // to H5R_DATASET_REGION ///\return DataSpace object ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 // Modification // Mar 29, 2015 // Used friend function to set id for DataSpace instead of the // existing id constructor or the setId method to avoid incrementing // ref count, as a work-around for a problem described in the JIRA // issue HDFFV-7947. -BMR //-------------------------------------------------------------------------- DataSpace H5Location::getRegion(void *ref, H5R_type_t ref_type) const { hid_t space_id = H5Rget_region(getId(), ref_type, ref); if (space_id < 0) { throw ReferenceException(inMemFunc("getRegion"), "H5Rget_region failed"); } try { DataSpace dataspace; f_DataSpace_setId(&dataspace, space_id); return(dataspace); } catch (DataSpaceIException E) { throw ReferenceException(inMemFunc("getRegion"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Location destructor ///\brief Noop destructor. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Location::~H5Location() {} //-------------------------------------------------------------------------- // Function: f_Attribute_setId - friend // Purpose: This function is friend to class H5::Attribute so that it // can set Attribute::id in order to work around a problem // described in the JIRA issue HDFFV-7947. // Applications shouldn't need to use it. // param attr - IN/OUT: Attribute object to be changed // param new_id - IN: New id to set // Programmer Binh-Minh Ribler - 2015 //-------------------------------------------------------------------------- void f_Attribute_setId(Attribute* attr, hid_t new_id) { attr->p_setId(new_id); } //-------------------------------------------------------------------------- // Function: f_DataSpace_setId - friend // Purpose: This function is friend to class H5::DataSpace so that it can // can set DataSpace::id in order to work around a problem // described in the JIRA issue HDFFV-7947. // Applications shouldn't need to use it. // param dspace - IN/OUT: DataSpace object to be changed // param new_id - IN: New id to set // Programmer Binh-Minh Ribler - 2015 //-------------------------------------------------------------------------- void f_DataSpace_setId(DataSpace* dspace, hid_t new_id) { dspace->p_setId(new_id); } #endif // DOXYGEN_SHOULD_SKIP_THIS #ifndef H5_NO_NAMESPACE } // end namespace #endif