/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include #ifndef H5_NO_NAMESPACE #endif #include "H5Include.h" #include "H5Exception.h" #include "H5IdComponent.h" #include "H5PropList.h" #include "H5Object.h" #include "H5DcreatProp.h" #include "H5CommonFG.h" #include "H5DataType.h" #include "H5DataSpace.h" #include "H5AbstractDs.h" #include "H5Attribute.h" #ifndef H5_NO_NAMESPACE namespace H5 { #endif #ifndef DOXYGEN_SHOULD_SKIP_THIS // userAttrOpWrpr simply interfaces between the user's function and the // C library function H5Aiterate; used to resolve the different prototype // problem. May be moved to Iterator later. extern "C" herr_t userAttrOpWrpr( hid_t loc_id, const char* attr_name, void* op_data ) { H5_std::string s_attr_name = H5_std::string( attr_name ); #ifdef NO_STATIC_CAST UserData4Aiterate* myData = (UserData4Aiterate *) op_data; #else UserData4Aiterate* myData = static_cast (op_data); #endif myData->op( *myData->object, s_attr_name, myData->opData ); return 0; } //-------------------------------------------------------------------------- // Function: H5Object default constructor (protected) // Description // The id is set by IdComponent() but subclass constructor will // set it to a valid HDF5 id. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::H5Object() : IdComponent() {} //-------------------------------------------------------------------------- // Function: H5Object overloaded constructor (protected) // Purpose Creates an H5Object object using the id of an existing HDF5 // object. // Parameters object_id - IN: Id of an existing HDF5 object // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::H5Object( const hid_t object_id ) : IdComponent( object_id ) {} #endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Object copy constructor ///\brief Copy constructor: makes a copy of the original H5Object /// instance. ///\param original - IN: H5Object instance to copy // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::H5Object( const H5Object& original ) : IdComponent( original ) {} //-------------------------------------------------------------------------- // Function: H5Object::createAttribute ///\brief Creates an attribute for a group, dataset, or named datatype. ///\param name - IN: Name of the attribute ///\param data_type - IN: Datatype for the attribute ///\param data_space - IN: Dataspace for the attribute - only simple /// dataspaces are allowed at this time ///\param create_plist - IN: Creation property list - default to /// PropList::DEFAULT ///\return Attribute instance ///\exception H5::AttributeIException ///\par Description /// The attribute name specified in \a name must be unique. /// Attempting to create an attribute with the same name as an /// existing attribute will raise an exception, leaving the /// pre-existing attribute intact. To overwrite an existing /// attribute with a new attribute of the same name, first /// delete the existing one with \c H5Object::removeAttr, then /// recreate it with this function. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::createAttribute( const char* name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { hid_t type_id = data_type.getId(); hid_t space_id = data_space.getId(); hid_t plist_id = create_plist.getId(); hid_t attr_id = H5Acreate( id, name, type_id, space_id, plist_id ); // If the attribute id is valid, create and return the Attribute object if( attr_id > 0 ) { Attribute attr( attr_id ); return( attr ); } else { throw AttributeIException(inMemFunc("createAttribute"), "H5Acreate failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::createAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c std::string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::createAttribute( const H5_std::string& name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { return( createAttribute( name.c_str(), data_type, data_space, create_plist )); } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief Opens an attribute given its name. ///\param name - IN: Name of the attribute ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const char* name ) const { hid_t attr_id = H5Aopen_name( id, name ); if( attr_id > 0 ) { Attribute attr( attr_id ); return( attr ); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_name failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c std::string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const H5_std::string& name ) const { return( openAttribute( name.c_str()) ); } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief Opens an attribute given its index. ///\param idx - IN: Index of the attribute, a 0-based, non-negative integer ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const unsigned int idx ) const { hid_t attr_id = H5Aopen_idx( id, idx ); if( attr_id > 0 ) { Attribute attr( attr_id ); return( attr ); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_idx failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::iterateAttrs ///\brief Iterates a user's function over all the attributes of an H5 /// object, which may be a group, dataset or named datatype. ///\param user_op - IN: User's function to operate on each attribute ///\param idx - IN/OUT: Starting (IN) and ending (OUT) attribute indices ///\param op_data - IN: User's data to pass to user's operator function ///\return Returned value of the last operator if it was non-zero, or /// zero if all attributes were processed ///\exception H5::AttributeIException ///\par Description /// For information, please refer to the C layer Reference Manual /// at: /// http://hdf.ncsa.uiuc.edu/HDF5/doc/RM_H5A.html#Annot-Iterate // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Object::iterateAttrs( attr_operator_t user_op, unsigned * idx, void *op_data ) { // store the user's function and data UserData4Aiterate* userData = new UserData4Aiterate; userData->opData = op_data; userData->idx = idx; userData->op = user_op; userData->object = this; // call the C library routine H5Aiterate to iterate the attributes int ret_value = H5Aiterate( id, idx, userAttrOpWrpr, (void *) userData ); // release memory delete userData; if( ret_value >= 0 ) return( ret_value ); else // raise exception when H5Aiterate returns a negative value { throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::getNumAttrs ///\brief Returns the number of attributes attached to this HDF5 object. ///\return Number of attributes ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Object::getNumAttrs() const { int num_attrs = H5Aget_num_attrs( id ); if( num_attrs < 0 ) { throw AttributeIException(inMemFunc("getNumAttrs"), "H5Aget_num_attrs failed - returned negative number of attributes"); } else return( num_attrs ); } //-------------------------------------------------------------------------- // Function: H5Object::removeAttr ///\brief Removes the named attribute from this object. ///\param name - IN: Name of the attribute to be removed ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Object::removeAttr( const char* name ) const { herr_t ret_value = H5Adelete( id, name ); if( ret_value < 0 ) { throw AttributeIException(inMemFunc("removeAttr"), "H5Adelete failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::removeAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c std::string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Object::removeAttr( const H5_std::string& name ) const { removeAttr( name.c_str() ); } //-------------------------------------------------------------------------- // Function: H5Object::renameAttr ///\brief Renames the named attribute from this object. ///\param oldname - IN: Name of the attribute to be renamed ///\param newname - IN: New name ame of the attribute ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Object::renameAttr(const char* oldname, const char* newname) const { herr_t ret_value = H5Arename(id, oldname, newname); if (ret_value < 0) { throw AttributeIException(inMemFunc("renameAttr"), "H5Arename failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::renameAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c std::string for the names. // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Object::renameAttr(const H5_std::string& oldname, const H5_std::string& newname) const { renameAttr (oldname.c_str(), newname.c_str()); } //-------------------------------------------------------------------------- // Function: H5Object::flush ///\brief Flushes all buffers associated with a file to disk. ///\param scope - IN: Specifies the scope of the flushing action, /// which can be either of these values: /// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file /// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file ///\exception H5::AttributeIException ///\par Description /// This object is used to identify the file to be flushed. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Object::flush(H5F_scope_t scope ) const { herr_t ret_value = H5Fflush( id, scope ); if( ret_value < 0 ) { throw FileIException(inMemFunc("flush"), "H5Fflush failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::getFileName ///\brief Gets the name of the file, in which this HDF5 object belongs. ///\return File name ///\exception H5::IdComponentException // Programmer Binh-Minh Ribler - Jul, 2004 //-------------------------------------------------------------------------- H5_std::string H5Object::getFileName() const { try { return(p_get_file_name()); } catch (IdComponentException E) { throw FileIException(inMemFunc("getFileName"), E.getDetailMsg()); } } //-------------------------------------------------------------------------- // Function: H5Object destructor ///\brief Noop destructor. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::~H5Object() {} #ifndef H5_NO_NAMESPACE } // end namespace #endif