/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include #include "H5Include.h" #include "H5Exception.h" #include "H5IdComponent.h" #include "H5PropList.h" #include "H5FaccProp.h" #include "H5FcreatProp.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" #include "H5Location.h" #include "H5Object.h" #include "H5DataType.h" #include "H5DataSpace.h" #include "H5AbstractDs.h" #include "H5Group.h" #include "H5File.h" #include "H5DataSet.h" #include "H5Attribute.h" #include "H5private.h" // for HDmemset #ifndef H5_NO_NAMESPACE namespace H5 { #endif #ifndef DOXYGEN_SHOULD_SKIP_THIS // userAttrOpWrpr simply interfaces between the user's function and the // C library function H5Aiterate2; used to resolve the different prototype // problem. May be moved to Iterator later. extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name, const H5A_info_t *ainfo, void *op_data) { H5std_string s_attr_name = H5std_string( attr_name ); UserData4Aiterate* myData = reinterpret_cast (op_data); myData->op( *myData->location, s_attr_name, myData->opData ); return 0; } #endif //-------------------------------------------------------------------------- // Function: H5Object default constructor (protected) // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::H5Object() : H5Location() {} //-------------------------------------------------------------------------- // Function: H5Object overloaded constructor (protected) // Purpose Creates an H5Object object using the id of an existing HDF5 // object. // Parameters object_id - IN: Id of an existing HDF5 object // Programmer Binh-Minh Ribler - 2000 // *** Deprecation warning *** // This constructor is no longer appropriate because the data member "id" had // been moved to the sub-classes. It will be removed in 1.10 release. If its // removal does not raise any problems in 1.10, it will be removed from 1.8 in // subsequent releases. // Removed in 1.10.1 - Aug 2016 //-------------------------------------------------------------------------- //H5Object::H5Object(const hid_t object_id) : H5Location() {} //-------------------------------------------------------------------------- // Function: H5Object copy constructor ///\brief Copy constructor: makes a copy of the original H5Object /// instance. ///\param original - IN: H5Object instance to copy // Programmer Binh-Minh Ribler - 2000 // *** Deprecation warning *** // This constructor is no longer appropriate because the data member "id" had // been moved to the sub-classes. It is removed from 1.8.15 because it is // a noop and it can be generated by the compiler if needed. //-------------------------------------------------------------------------- // H5Object::H5Object(const H5Object& original) : H5Location() {} //-------------------------------------------------------------------------- // Function: H5Object::createAttribute ///\brief Creates an attribute for a group, dataset, or named datatype. ///\param name - IN: Name of the attribute ///\param data_type - IN: Datatype for the attribute ///\param data_space - IN: Dataspace for the attribute - only simple /// dataspaces are allowed at this time ///\param create_plist - IN: Creation property list - default to /// PropList::DEFAULT ///\return Attribute instance ///\exception H5::AttributeIException ///\par Description /// The attribute name specified in \a name must be unique. /// Attempting to create an attribute with the same name as an /// existing attribute will raise an exception, leaving the /// pre-existing attribute intact. To overwrite an existing /// attribute with a new attribute of the same name, first /// delete the existing one with \c H5Object::removeAttr, then /// recreate it with this function. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::createAttribute( const char* name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { hid_t type_id = data_type.getId(); hid_t space_id = data_space.getId(); hid_t plist_id = create_plist.getId(); hid_t attr_id = H5Acreate2(getId(), name, type_id, space_id, plist_id, H5P_DEFAULT ); // If the attribute id is valid, create and return the Attribute object if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return( attr ); } else throw AttributeIException(inMemFunc("createAttribute"), "H5Acreate2 failed"); } //-------------------------------------------------------------------------- // Function: H5Object::createAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::createAttribute( const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const { return( createAttribute( name.c_str(), data_type, data_space, create_plist )); } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief Opens an attribute given its name. ///\param name - IN: Name of the attribute ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const char* name ) const { hid_t attr_id = H5Aopen(getId(), name, H5P_DEFAULT); if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return( attr ); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const H5std_string& name ) const { return( openAttribute( name.c_str()) ); } //-------------------------------------------------------------------------- // Function: H5Object::openAttribute ///\brief Opens an attribute given its index. ///\param idx - IN: Index of the attribute, a 0-based, non-negative integer ///\return Attribute instance ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- Attribute H5Object::openAttribute( const unsigned int idx ) const { hid_t attr_id = H5Aopen_by_idx(getId(), ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, static_cast(idx), H5P_DEFAULT, H5P_DEFAULT); if( attr_id > 0 ) { Attribute attr; f_Attribute_setId(&attr, attr_id); return(attr); } else { throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_by_idx failed"); } } //-------------------------------------------------------------------------- // Function: H5Object::iterateAttrs ///\brief Iterates a user's function over all the attributes of an H5 /// object, which may be a group, dataset or named datatype. ///\param user_op - IN: User's function to operate on each attribute ///\param _idx - IN/OUT: Starting (IN) and ending (OUT) attribute indices ///\param op_data - IN: User's data to pass to user's operator function ///\return Returned value of the last operator if it was non-zero, or /// zero if all attributes were processed ///\exception H5::AttributeIException ///\par Description /// The signature of user_op is /// void (*)(H5::H5Location&, H5std_string, void*). /// For information, please refer to the C layer Reference Manual /// at: /// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5A.html#Annot-Iterate // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Object::iterateAttrs( attr_operator_t user_op, unsigned *_idx, void *op_data ) { // store the user's function and data UserData4Aiterate* userData = new UserData4Aiterate; userData->opData = op_data; userData->op = user_op; userData->location = this; // call the C library routine H5Aiterate2 to iterate the attributes hsize_t idx = _idx ? static_cast(*_idx) : 0; int ret_value = H5Aiterate2(getId(), H5_INDEX_NAME, H5_ITER_INC, &idx, userAttrOpWrpr, reinterpret_cast(userData)); // release memory delete userData; if( ret_value >= 0 ) { /* Pass back update index value to calling code */ if (_idx) *_idx = static_cast(idx); return( ret_value ); } else // raise exception when H5Aiterate returns a negative value throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate2 failed"); } //-------------------------------------------------------------------------- // Function: H5Object::getNumAttrs ///\brief Returns the number of attributes attached to this HDF5 object. ///\return Number of attributes ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Object::getNumAttrs() const { H5O_info_t oinfo; /* Object info */ if(H5Oget_info(getId(), &oinfo) < 0) throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed"); else return(static_cast(oinfo.num_attrs)); } //-------------------------------------------------------------------------- // Function: H5Object::attrExists ///\brief Checks whether the named attribute exists at this location. ///\param name - IN: Name of the attribute to be queried ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2013 //-------------------------------------------------------------------------- bool H5Object::attrExists(const char* name) const { // Call C routine H5Aexists to determine whether an attribute exists // at this location, which could be specified by a file, group, dataset, // or named datatype. herr_t ret_value = H5Aexists(getId(), name); if( ret_value > 0 ) return true; else if(ret_value == 0) return false; else // Raise exception when H5Aexists returns a negative value throw AttributeIException(inMemFunc("attrExists"), "H5Aexists failed"); } //-------------------------------------------------------------------------- // Function: H5Object::attrExists ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- bool H5Object::attrExists(const H5std_string& name) const { return(attrExists(name.c_str())); } //-------------------------------------------------------------------------- // Function: H5Object::removeAttr ///\brief Removes the named attribute from this object. ///\param name - IN: Name of the attribute to be removed ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Object::removeAttr( const char* name ) const { herr_t ret_value = H5Adelete(getId(), name); if( ret_value < 0 ) throw AttributeIException(inMemFunc("removeAttr"), "H5Adelete failed"); } //-------------------------------------------------------------------------- // Function: H5Object::removeAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Object::removeAttr( const H5std_string& name ) const { removeAttr( name.c_str() ); } //-------------------------------------------------------------------------- // Function: H5Object::renameAttr ///\brief Renames the named attribute from this object. ///\param oldname - IN: Name of the attribute to be renamed ///\param newname - IN: New name ame of the attribute ///\exception H5::AttributeIException // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Object::renameAttr(const char* oldname, const char* newname) const { herr_t ret_value = H5Arename(getId(), oldname, newname); if (ret_value < 0) throw AttributeIException(inMemFunc("renameAttr"), "H5Arename failed"); } //-------------------------------------------------------------------------- // Function: H5Object::renameAttr ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes /// a reference to an \c H5std_string for the names. // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- void H5Object::renameAttr(const H5std_string& oldname, const H5std_string& newname) const { renameAttr (oldname.c_str(), newname.c_str()); } //-------------------------------------------------------------------------- // Function: getObjName ///\brief Given an id, returns the type of the object. ///\return The name of the object // Programmer Binh-Minh Ribler - Mar, 2014 //-------------------------------------------------------------------------- ssize_t H5Object::getObjName(char *obj_name, size_t buf_size) const { // H5Iget_name will get buf_size-1 chars of the name to null terminate it ssize_t name_size = H5Iget_name(getId(), obj_name, buf_size); // If H5Iget_name returns a negative value, raise an exception if (name_size < 0) { throw Exception(inMemFunc("getObjName"), "H5Iget_name failed"); } else if (name_size == 0) { throw Exception(inMemFunc("getObjName"), "Object must have a name, but name length is 0"); } // Return length of the name return(name_size); } //-------------------------------------------------------------------------- // Function: H5Object::getObjName ///\brief Returns the name of this object as an \a H5std_string. ///\return Name of the object ///\exception H5::Exception // Programmer Binh-Minh Ribler - Mar, 2014 // Modification //-------------------------------------------------------------------------- H5std_string H5Object::getObjName() const { H5std_string obj_name(""); // object name to return // Preliminary call to get the size of the object name ssize_t name_size = H5Iget_name(getId(), NULL, static_cast(0)); // If H5Iget_name failed, throw exception if (name_size < 0) { throw Exception(inMemFunc("getObjName"), "H5Iget_name failed"); } else if (name_size == 0) { throw Exception(inMemFunc("getObjName"), "Object must have a name, but name length is 0"); } // Object's name exists, retrieve it else if (name_size > 0) { char* name_C = new char[name_size+1]; // temporary C-string HDmemset(name_C, 0, name_size+1); // clear buffer // Use overloaded function name_size = getObjName(name_C, name_size+1); // Convert the C object name to return obj_name = name_C; // Clean up resource delete []name_C; } // Return object's name return(obj_name); } //-------------------------------------------------------------------------- // Function: H5Object::getObjName ///\brief Gets the name of this object, returning its length. ///\param obj_name - OUT: Buffer for the name string as \a H5std_string ///\param len - IN: Desired length of the name, default to 0 ///\return Actual length of the object name ///\exception H5::Exception ///\par Description /// This function retrieves the object's name as an std string. /// buf_size can specify a specific length or default to 0, in /// which case the entire name will be retrieved. // Programmer Binh-Minh Ribler - Mar, 2014 //-------------------------------------------------------------------------- ssize_t H5Object::getObjName(H5std_string& obj_name, size_t len) const { ssize_t name_size = 0; // If no length is provided, get the entire object name if (len == 0) { obj_name = getObjName(); name_size = obj_name.length(); } // If length is provided, get that number of characters in name else { char* name_C = new char[len+1]; // temporary C-string HDmemset(name_C, 0, len+1); // clear buffer // Use overloaded function name_size = getObjName(name_C, len+1); // Convert the C object name to return obj_name = name_C; // Clean up resource delete []name_C; } // Otherwise, keep obj_name intact // Return name size return(name_size); } #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Object destructor ///\brief Noop destructor. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- H5Object::~H5Object() {} #endif // DOXYGEN_SHOULD_SKIP_THIS #ifndef H5_NO_NAMESPACE } // end namespace #endif