/* * Copyright (C) 2001 National Center for Supercomputing Applications * All rights reserved. * */ /*********************************************************** * * Test program: th5s * * Test the dataspace functionality * *************************************************************/ #include #include "H5Cpp.h" #include "testhdf5.h" #ifndef H5_NO_NAMESPACE using namespace H5; #endif /* !H5_NO_NAMESPACE */ #define TESTFILE "th5s.h5" #define FILE "th5s1.h5" /* 3-D dataset with fixed dimensions */ #define SPACE1_NAME "Space1" #define SPACE1_RANK 3 #define SPACE1_DIM1 3 #define SPACE1_DIM2 15 #define SPACE1_DIM3 13 /* 4-D dataset with one unlimited dimension */ #define SPACE2_NAME "Space2" #define SPACE2_RANK 4 #define SPACE2_DIM1 0 #define SPACE2_DIM2 15 #define SPACE2_DIM3 13 #define SPACE2_DIM4 23 #define SPACE2_MAX1 H5S_UNLIMITED #define SPACE2_MAX2 15 #define SPACE2_MAX3 13 #define SPACE2_MAX4 23 /* Scalar dataset with simple datatype */ #define SPACE3_NAME "Scalar1" #define SPACE3_RANK 0 unsigned space3_data=65; /* Scalar dataset with compound datatype */ #define SPACE4_NAME "Scalar2" #define SPACE4_RANK 0 #define SPACE4_FIELDNAME1 "c1" #define SPACE4_FIELDNAME2 "u" #define SPACE4_FIELDNAME3 "f" #define SPACE4_FIELDNAME4 "c2" size_t space4_field1_off=0; size_t space4_field2_off=0; size_t space4_field3_off=0; size_t space4_field4_off=0; struct space4_struct { char c1; unsigned u; float f; char c2; } space4_data={'v',987123,-3.14,'g'}; /* Test data for 4th dataspace */ /**************************************************************** ** ** test_h5s_basic(): Test basic H5S (dataspace) code. ** ****************************************************************/ static void test_h5s_basic(void) { hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2, SPACE2_DIM3, SPACE2_DIM4}; hsize_t dims3[H5S_MAX_RANK+1]; hsize_t tmax[4]; /* Output message about test being performed */ MESSAGE(5, ("Testing Dataspace Manipulation\n")); try { // beginning of first try block /* Create file - removed this since the following operations don't need the file to be opened */ // Create simple dataspace sid1 DataSpace sid1 (SPACE1_RANK, dims1 ); // Get simple extent npoints of the dataspace sid1 and verify it hssize_t n; /* Number of dataspace elements */ n = sid1.getSimpleExtentNpoints(); VERIFY(n, SPACE1_DIM1 * SPACE1_DIM2 * SPACE1_DIM3, "H5Sget_simple_extent_npoints"); // Get the logical rank of dataspace sid1 and verify it int rank; /* Logical rank of dataspace */ rank = sid1.getSimpleExtentNdims(); VERIFY(rank, SPACE1_RANK, "H5Sget_simple_extent_ndims"); // Retrieves dimension size of dataspace sid1 and verify it int ndims; /* Number of dimensions */ hsize_t tdims[4]; /* Dimension array to test with */ ndims = sid1.getSimpleExtentDims( tdims ); VERIFY(HDmemcmp(tdims, dims1, SPACE1_RANK * sizeof(unsigned)), 0, "H5Sget_simple_extent_dims"); // Create simple dataspace sid2 hsize_t max2[] = {SPACE2_MAX1, SPACE2_MAX2, SPACE2_MAX3, SPACE2_MAX4}; DataSpace sid2 (SPACE2_RANK, dims2, max2); // Get simple extent npoints of dataspace sid2 and verify it n = sid2.getSimpleExtentNpoints(); VERIFY(n, SPACE2_DIM1 * SPACE2_DIM2 * SPACE2_DIM3 * SPACE2_DIM4, "H5Sget_simple_extent_npoints"); // Get the logical rank of dataspace sid2 and verify it rank = sid2.getSimpleExtentNdims(); VERIFY(rank, SPACE2_RANK, "H5Sget_simple_extent_ndims"); // Retrieves dimension size and max size of dataspace sid2 and // verify them ndims = sid2.getSimpleExtentDims( tdims, tmax ); VERIFY(HDmemcmp(tdims, dims2, SPACE2_RANK * sizeof(unsigned)), 0, "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tmax, max2, SPACE2_RANK * sizeof(unsigned)), 0, "H5Sget_simple_extent_dims"); } // end of first try block catch( DataSpaceIException error ) { CHECK(FAIL, FAIL, error.getCFuncName()); } /* * Check to be sure we can't create a simple data space that has too many * dimensions. */ try { DataSpace manydims_ds(H5S_MAX_RANK+1, dims3, NULL); // Should FAIL but didn't - BMR (Note 1): a new macro that skips // the comparison b/w the 1st & 2nd args would be more appropriate, // but VERIFY will still do - Mar 12, 01 VERIFY(manydims_ds.getId(), FAIL, "DataSpace constructor"); } catch( DataSpaceIException error ) {} // do nothing, FAIL expected /* * Try reading a file that has been prepared that has a dataset with a * higher dimensionality than what the library can handle. * * If this test fails and the H5S_MAX_RANK variable has changed, follow * the instructions in space_overflow.c for regenating the th5s.h5 file. */ //{ char testfile[512]=""; char *srcdir = getenv("srcdir"); if (srcdir && ((strlen(srcdir) + strlen(TESTFILE) + 1) < sizeof(testfile))){ strcpy(testfile, srcdir); strcat(testfile, "/"); } strcat(testfile, TESTFILE); try { // try block for testing higher dimensionality // Create file H5File fid1(testfile, H5F_ACC_RDONLY); // Try to open the dataset that has higher dimensionality than // what the library can handle and this operation should fail. try { DataSet dset1 = fid1.openDataSet( "dset" ); VERIFY( dset1.getId(), FAIL, "H5File::openDataSet"); } catch( FileIException error ) { } // do nothing, FAIL expected } // end of try block for testing higher dimensionality // catch exception thrown by H5File constructor catch( FileIException error ) { CHECK_I(FAIL, error.getCFuncName()); cout << "***cannot open the pre-created H5S_MAX_RANK test file" << testfile << endl; } // CHECK_I(ret, "H5Fclose"); // leave this here, later, fake a failure // in the p_close see how this will handle it. ??? /* Verify that incorrect dimensions don't work */ dims1[0] = 0; try { DataSpace wrongdim_ds (SPACE1_RANK, dims1); VERIFY(wrongdim_ds.getId(), FAIL, "DataSpace constructor"); } catch( DataSpaceIException error ) {} // do nothing; FAIL expected // Create a simple dataspace DataSpace sid3 (H5S_SIMPLE); // Attempts to use incorrect dimensions, should fail try { sid3.setExtentSimple( SPACE1_RANK, dims1 ); } catch( DataSpaceIException error ) { // ret value is already < 0 for an exception to be thrown; // also see Note 1 above VERIFY(FAIL, FAIL, error.getCFuncName()); } } /* test_h5s_basic() */ /**************************************************************** ** ** test_h5s_scalar_write(): Test scalar H5S (dataspace) writing code. ** ****************************************************************/ static void test_h5s_scalar_write(void) { /* Output message about test being performed */ MESSAGE(5, ("Testing Scalar Dataspace Writing\n")); try { // Create file H5File fid1(FILE, H5F_ACC_TRUNC); // CHECK(fid1, FAIL, "H5Fcreate"); /* Create scalar dataspace */ //sid1 = H5Screate_simple(SPACE3_RANK, NULL, NULL); DataSpace sid1(SPACE3_RANK, NULL); //n = H5Sget_simple_extent_npoints(sid1); hssize_t n; /* Number of dataspace elements */ n = sid1.getSimpleExtentNpoints(); VERIFY(n, 1, "DataSpace::getSimpleExtentNpoints"); //VERIFY(n, 1, "H5Sget_simple_extent_npoints"); int rank; /* Logical rank of dataspace */ rank = sid1.getSimpleExtentNdims(); //VERIFY(rank, SPACE3_RANK, "H5Sget_simple_extent_ndims"); VERIFY(rank, SPACE3_RANK, "DataSpace::getSimpleExtentNdims"); // Retrieves dimension size of dataspace sid1 and verify it int ndims; /* Number of dimensions */ hsize_t tdims[4]; /* Dimension array to test with */ ndims = sid1.getSimpleExtentDims( tdims ); //VERIFY(ndims, 0, "H5Sget_simple_extent_dims"); VERIFY(ndims, 0, "DataSpace::getSimpleExtentDims"); // rank = H5Sget_simple_extent_ndims(sid1); //VERIFY(rank, SPACE3_RANK, "H5Sget_simple_extent_ndims"); // ret = H5Sget_simple_extent_dims(sid1, tdims, NULL); // VERIFY(ret, 0, "H5Sget_simple_extent_dims"); /* Verify extent type */ //ext_type = H5Sget_simple_extent_type(sid1); //VERIFY(ext_type, H5S_SCALAR, "H5Sget_simple_extent_type"); H5S_class_t ext_type; /* Extent type */ ext_type = sid1.getSimpleExtentType(); VERIFY(ext_type, H5S_SCALAR, "DataSpace::getSimpleExtentType"); /* Create a dataset */ DataSet dataset = fid1.createDataSet("Dataset1", PredType::NATIVE_UINT,sid1); dataset.write(&space3_data, PredType::NATIVE_UINT); } // end of try block catch (Exception error) { CHECK(FAIL, FAIL, error.getCFuncName()); } } /* test_h5s_scalar_write() */ /**************************************************************** ** ** test_h5s_scalar_read(): Test scalar H5S (dataspace) reading code. ** ****************************************************************/ static void test_h5s_scalar_read(void) { hsize_t tdims[4]; /* Dimension array to test with */ /* Output message about test being performed */ MESSAGE(5, ("Testing Scalar Dataspace Reading\n")); try { /* Create file */ H5File fid1(FILE, H5F_ACC_RDWR); //CHECK(fid1, FAIL, "H5Fopen"); /* Create a dataset */ DataSet dataset = fid1.openDataSet("Dataset1"); //CHECK(dataset, FAIL, "H5Dopen"); DataSpace sid1 = dataset.getSpace(); //CHECK(sid1, FAIL, "H5Dget_space"); // Get the number of dataspace elements hssize_t n = sid1.getSimpleExtentNpoints(); //hssize_t n = H5Sget_simple_extent_npoints(sid1); //CHECK(n, UFAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, 1, "H5Sget_simple_extent_npoints"); // Get the logical rank of the dataspace int ndims = sid1.getSimpleExtentNdims(); //CHECK(rank, UFAIL, "H5Sget_simple_extent_ndims"); VERIFY(ndims, SPACE3_RANK, "H5Sget_simple_extent_ndims"); ndims = sid1.getSimpleExtentDims(tdims); //ret = H5Sget_simple_extent_dims(sid1, tdims, NULL); VERIFY(ndims, 0, "H5Sget_simple_extent_dims"); unsigned rdata; /* Scalar data read in */ dataset.read(&rdata, PredType::NATIVE_UINT); //CHECK(ret, FAIL, "H5Dread"); VERIFY(rdata, space3_data, "H5Dread"); } // end of try block catch (Exception error) { // all the exceptions caused by negative returned values by C APIs CHECK(FAIL, FAIL, error.getCFuncName()); } } /* test_h5s_scalar_read() */ /**************************************************************** ** ** test_h5s_compound_scalar_write(): Test scalar H5S (dataspace) writing for ** compound datatypes. ** ****************************************************************/ static void test_h5s_compound_scalar_write(void) { /* Output message about test being performed */ MESSAGE(5, ("Testing Compound Dataspace Writing\n")); try { /* Create file */ //fid1 = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); H5File fid1(FILE, H5F_ACC_TRUNC); //CHECK(fid1, FAIL, "H5Fcreate"); /* Create the compound datatype. */ CompType tid1(sizeof(struct space4_struct)); //tid1 = H5Tcreate (H5T_COMPOUND, sizeof(struct space4_struct)); //CHECK(tid1, FAIL, "H5Tcreate"); space4_field1_off=HOFFSET(struct space4_struct, c1); //ret = H5Tinsert(tid1, SPACE4_FIELDNAME1, space4_field1_off, //H5T_NATIVE_SCHAR); tid1.insertMember(SPACE4_FIELDNAME1, space4_field1_off, PredType::NATIVE_SCHAR); //CHECK(ret, FAIL, "H5Tinsert"); space4_field2_off=HOFFSET(struct space4_struct, u); //ret = H5Tinsert(tid1, SPACE4_FIELDNAME2, space4_field2_off, // H5T_NATIVE_UINT); tid1.insertMember(SPACE4_FIELDNAME2, space4_field2_off, PredType::NATIVE_UINT); //CHECK(ret, FAIL, "H5Tinsert"); space4_field3_off=HOFFSET(struct space4_struct, f); tid1.insertMember(SPACE4_FIELDNAME3, space4_field3_off, PredType::NATIVE_FLOAT); //CHECK(ret, FAIL, "H5Tinsert"); space4_field4_off=HOFFSET(struct space4_struct, c2); tid1.insertMember(SPACE4_FIELDNAME4, space4_field4_off, PredType::NATIVE_SCHAR); //CHECK(ret, FAIL, "H5Tinsert"); /* Create scalar dataspace */ DataSpace sid1(SPACE3_RANK, NULL); //sid1 = H5Screate_simple(SPACE3_RANK, NULL, NULL); //CHECK(sid1, FAIL, "H5Screate_simple"); // Get the number of dataspace elements hssize_t n = sid1.getSimpleExtentNpoints(); //hssize_t n = H5Sget_simple_extent_npoints(sid1); //CHECK(n, UFAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, 1, "H5Sget_simple_extent_npoints"); // Get the logical rank of the dataspace int ndims = sid1.getSimpleExtentNdims(); //CHECK(rank, UFAIL, "H5Sget_simple_extent_ndims"); VERIFY(ndims, SPACE3_RANK, "H5Sget_simple_extent_ndims"); hsize_t tdims[4]; /* Dimension array to test with */ ndims = sid1.getSimpleExtentDims(tdims); //ret = H5Sget_simple_extent_dims(sid1, tdims, NULL); VERIFY(ndims, 0, "H5Sget_simple_extent_dims"); /* Create a dataset */ DataSet dataset = fid1.createDataSet("Dataset1", tid1, sid1); //dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT); //CHECK(dataset, FAIL, "H5Dcreate"); dataset.write(&space4_data, tid1); //ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &space4_data); //CHECK(ret, FAIL, "H5Dwrite"); } // end of try block catch (Exception error) { // all the exceptions caused by negative returned values by C APIs CHECK(FAIL, FAIL, error.getCFuncName()); } } /* test_h5s_compound_scalar_write() */ /**************************************************************** ** ** test_h5s_compound_scalar_read(): Test scalar H5S (dataspace) reading for ** compound datatypes. ** ****************************************************************/ static void test_h5s_compound_scalar_read(void) { hid_t fid1; /* HDF5 File IDs */ hid_t dataset; /* Dataset ID */ hid_t sid1; /* Dataspace ID */ hid_t type; /* Datatype */ unsigned rank; /* Logical rank of dataspace */ hsize_t tdims[4]; /* Dimension array to test with */ size_t n; /* Number of dataspace elements */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Compound Dataspace Reading\n")); try { /* Create file */ H5File fid1(FILE, H5F_ACC_RDWR); //CHECK(fid1, FAIL, "H5Fopen"); /* Create a dataset */ DataSet dataset = fid1.openDataSet("Dataset1"); //CHECK(dataset, FAIL, "H5Dopen"); DataSpace sid1 = dataset.getSpace(); //CHECK(sid1, FAIL, "H5Dget_space"); // Get the number of dataspace elements hssize_t n = sid1.getSimpleExtentNpoints(); //hssize_t n = H5Sget_simple_extent_npoints(sid1); //CHECK(n, UFAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, 1, "H5Sget_simple_extent_npoints"); // Get the logical rank of the dataspace int ndims = sid1.getSimpleExtentNdims(); //CHECK(rank, UFAIL, "H5Sget_simple_extent_ndims"); VERIFY(ndims, SPACE3_RANK, "H5Sget_simple_extent_ndims"); ndims = sid1.getSimpleExtentDims(tdims); //ret = H5Sget_simple_extent_dims(sid1, tdims, NULL); VERIFY(ndims, 0, "H5Sget_simple_extent_dims"); // Get the datatype of this dataset. CompType type(dataset); //type=H5Dget_type(dataset); //CHECK(type, FAIL, "H5Dget_type"); struct space4_struct rdata; /* Scalar data read in */ dataset.read(&rdata, type); //CHECK(ret, FAIL, "H5Dread"); //ret = H5Dread(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdata); // Verify read data if(HDmemcmp(&space4_data,&rdata,sizeof(struct space4_struct))) { cout << "scalar data different: space4_data.c1=" << space4_data.c1 << ", read_data4.c1=" << rdata.c1 << endl; //printf("scalar data different: space4_data.c1=%c, read_data4.c1=%c\n",space4_data.c1,rdata.c1); cout << "scalar data different: space4_data.u=" << space4_data.u << ", read_data4.u=" << rdata.u << endl; //printf("scalar data different: space4_data.u=%u, read_data4.u=%u\n",space4_data.u,rdata.u); cout << "scalar data different: space4_data.f=" << space4_data.f << ", read_data4.f=" << rdata.f << endl; //printf("scalar data different: space4_data.f=%f, read_data4.f=%f\n",space4_data.f,rdata.f); cout << "scalar data different: space4_data.c1=" << space4_data.c1 << ", read_data4.c1=" << rdata.c2 << endl; //printf("scalar data different: space4_data.c1=%c, read_data4.c1=%c\n",space4_data.c1,rdata.c2); num_errs++; } /* end if */ } // end of try block catch (Exception error) { // all the exceptions caused by negative returned values by C APIs CHECK(FAIL, FAIL, error.getCFuncName()); } } /* test_h5s_compound_scalar_read() */ /**************************************************************** ** ** test_h5s(): Main H5S (dataspace) testing routine. ** ****************************************************************/ void test_h5s(void) { /* Output message about test being performed */ MESSAGE(5, ("Testing Dataspaces\n")); test_h5s_basic(); /* Test basic H5S code */ test_h5s_scalar_write(); /* Test scalar H5S writing code */ test_h5s_scalar_read(); /* Test scalar H5S reading code */ test_h5s_compound_scalar_write(); /* Test compound datatype scalar H5S writing code */ test_h5s_compound_scalar_read(); /* Test compound datatype scalar H5S reading code */ } /* test_h5s() */ /*------------------------------------------------------------------------- * Function: cleanup_h5s * * Purpose: Cleanup temporary test files * * Return: none * * Programmer: Albert Cheng * July 2, 1998 * * Modifications: * *------------------------------------------------------------------------- */ void cleanup_h5s(void) { remove(FILE); }