/************************************************************** * * This example shows how to work with extendible datasets. * In the current version of the library a dataset MUST be * chunked in order to be extendible. * * This example is derived from the h5_extend_write.c and * h5_read_chunk.c examples that are in the "Introduction * to HDF5". * *************************************************************/ #include "hdf5.h" #define FILE "ext.h5" #define DATASETNAME "ExtendibleArray" #define RANK 2 int main (void) { hid_t file; /* handles */ hid_t dataspace, dataset; hid_t filespace; hid_t cparms; hid_t memspace; hsize_t dims[2] = { 3, 3}; /* dataset dimensions at creation time */ hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */ hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; hsize_t size[2]; hssize_t offset[2]; hsize_t i,j; herr_t status, status_n; int data1[3][3] = { {1, 1, 1}, /* data to write */ {1, 1, 1}, {1, 1, 1} }; int data2[7] = { 2, 2, 2, 2, 2, 2, 2}; /* Variables used in reading data back */ hsize_t chunk_dims[2] ={2, 5}; hsize_t chunk_dimsr[2]; hsize_t dimsr[2]; int data_out[10][3]; int rank, rank_chunk; /* Create the data space with unlimited dimensions. */ dataspace = H5Screate_simple (RANK, dims, maxdims); /* Create a new file. If file exists its contents will be overwritten. */ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* Modify dataset creation properties, i.e. enable chunking */ cparms = H5Pcreate (H5P_DATASET_CREATE); status = H5Pset_chunk ( cparms, RANK, chunk_dims); /* Create a new dataset within the file using cparms creation properties. */ dataset = H5Dcreate (file, DATASETNAME, H5T_NATIVE_INT, dataspace, cparms); /* Extend the dataset. This call assures that dataset is 3 x 3.*/ size[0] = 3; size[1] = 3; status = H5Dextend (dataset, size); /* Select a hyperslab */ filespace = H5Dget_space (dataset); offset[0] = 0; offset[1] = 0; status = H5Sselect_hyperslab (filespace, H5S_SELECT_SET, offset, NULL, dims1, NULL); /* Write the data to the hyperslab */ status = H5Dwrite (dataset, H5T_NATIVE_INT, dataspace, filespace, H5P_DEFAULT, data1); /* Extend the dataset. Dataset becomes 10 x 3 */ dims[0] = dims1[0] + dims2[0]; size[0] = dims[0]; size[1] = dims[1]; status = H5Dextend (dataset, size); /* Select a hyperslab */ filespace = H5Dget_space (dataset); offset[0] = 3; offset[1] = 0; status = H5Sselect_hyperslab (filespace, H5S_SELECT_SET, offset, NULL, dims2, NULL); /* Define memory space */ dataspace = H5Screate_simple (RANK, dims2, NULL); /* Write the data to the hyperslab */ status = H5Dwrite (dataset, H5T_NATIVE_INT, dataspace, filespace, H5P_DEFAULT, data2); /* Close resources */ status = H5Dclose (dataset); status = H5Sclose (dataspace); status = H5Sclose (filespace); status = H5Fclose (file); /**************************************************************** Read the data back ***************************************************************/ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT); dataset = H5Dopen (file, DATASETNAME); filespace = H5Dget_space (dataset); rank = H5Sget_simple_extent_ndims (filespace); status_n = H5Sget_simple_extent_dims (filespace, dimsr, NULL); cparms = H5Dget_create_plist (dataset); if (H5D_CHUNKED == H5Pget_layout (cparms)) { rank_chunk = H5Pget_chunk (cparms, 2, chunk_dimsr); } memspace = H5Screate_simple (rank,dimsr,NULL); status = H5Dread (dataset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, data_out); printf("\n"); printf("Dataset: \n"); for (j = 0; j < dimsr[0]; j++) { for (i = 0; i < dimsr[1]; i++) printf("%d ", data_out[j][i]); printf("\n"); } status = H5Pclose (cparms); status = H5Dclose (dataset); status = H5Sclose (filespace); status = H5Sclose (memspace); status = H5Fclose (file); }