/************************************************************ This example shows how to write and read a hyperslab. It is derived from the h5_read.c and h5_write.c examples in the "Introduction to HDF5". ************************************************************/ #include "hdf5.h" #define FILE "sds.h5" #define DATASETNAME "IntArray" #define NX_SUB 3 /* hyperslab dimensions */ #define NY_SUB 4 #define NX 7 /* output buffer dimensions */ #define NY 7 #define NZ 3 #define RANK 2 #define RANK_OUT 3 #define X 5 /* dataset dimensions */ #define Y 6 int main (void) { hsize_t dimsf[2]; /* dataset dimensions */ int data[X][Y]; /* data to write */ /* * Data and output buffer initialization. */ hid_t file, dataset; /* handles */ hid_t dataspace; hid_t memspace; hsize_t dimsm[3]; /* memory space dimensions */ hsize_t dims_out[2]; /* dataset dimensions */ herr_t status; int data_out[NX][NY][NZ ]; /* output buffer */ hsize_t count[2]; /* size of the hyperslab in the file */ hsize_t offset[2]; /* hyperslab offset in the file */ hsize_t count_out[3]; /* size of the hyperslab in memory */ hsize_t offset_out[3]; /* hyperslab offset in memory */ int i, j, k, status_n, rank; /********************************************************* This writes data to the HDF5 file. *********************************************************/ /* * Data and output buffer initialization. */ for (j = 0; j < X; j++) { for (i = 0; i < Y; i++) data[j][i] = i + j; } /* * 0 1 2 3 4 5 * 1 2 3 4 5 6 * 2 3 4 5 6 7 * 3 4 5 6 7 8 * 4 5 6 7 8 9 */ /* * Create a new file using H5F_ACC_TRUNC access, * the default file creation properties, and the default file * access properties. */ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* * Describe the size of the array and create the data space for fixed * size dataset. */ dimsf[0] = X; dimsf[1] = Y; dataspace = H5Screate_simple (RANK, dimsf, NULL); /* * Create a new dataset within the file using defined dataspace and * default dataset creation properties. */ dataset = H5Dcreate (file, DATASETNAME, H5T_STD_I32BE, dataspace, H5P_DEFAULT); /* * Write the data to the dataset using default transfer properties. */ status = H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); /* * Close/release resources. */ H5Sclose (dataspace); H5Dclose (dataset); H5Fclose (file); /************************************************************* This reads the hyperslab from the sds.h5 file just created, into a 2-dimensional plane of the 3-dimensional array. ************************************************************/ for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) { for (k = 0; k < NZ ; k++) data_out[j][i][k] = 0; } } /* * Open the file and the dataset. */ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT); dataset = H5Dopen (file, DATASETNAME); dataspace = H5Dget_space (dataset); /* dataspace handle */ rank = H5Sget_simple_extent_ndims (dataspace); status_n = H5Sget_simple_extent_dims (dataspace, dims_out, NULL); printf("\nRank: %d\nDimensions: %lu x %lu \n", rank, (unsigned long)(dims_out[0]), (unsigned long)(dims_out[1])); /* * Define hyperslab in the dataset. */ offset[0] = 1; offset[1] = 2; count[0] = NX_SUB; count[1] = NY_SUB; status = H5Sselect_hyperslab (dataspace, H5S_SELECT_SET, offset, NULL, count, NULL); /* * Define the memory dataspace. */ dimsm[0] = NX; dimsm[1] = NY; dimsm[2] = NZ; memspace = H5Screate_simple (RANK_OUT, dimsm, NULL); /* * Define memory hyperslab. */ offset_out[0] = 3; offset_out[1] = 0; offset_out[2] = 0; count_out[0] = NX_SUB; count_out[1] = NY_SUB; count_out[2] = 1; status = H5Sselect_hyperslab (memspace, H5S_SELECT_SET, offset_out, NULL, count_out, NULL); /* * Read data from hyperslab in the file into the hyperslab in * memory and display. */ status = H5Dread (dataset, H5T_NATIVE_INT, memspace, dataspace, H5P_DEFAULT, data_out); printf ("Data:\n "); for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]); printf("\n "); } printf("\n"); /* * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 3 4 5 6 0 0 0 * 4 5 6 7 0 0 0 * 5 6 7 8 0 0 0 * 0 0 0 0 0 0 0 */ /* * Close and release resources. */ H5Dclose (dataset); H5Sclose (dataspace); H5Sclose (memspace); H5Fclose (file); }