::= defined as
<tname> a token with the name tname
<a> | <b> one of <a> or <b>
<a>opt zero or one occurrence of <a>
<a>* zero or more occurrence of <a>
<a>+ one or more occurrence of <a>
TBD To Be Decided
<file> ::= HDF5 <file_name> { <file_super_block>opt <root_group> }
<file_name> ::= <identifier>
<file_super_block> ::= BOOT_BLOCK { <super_block_content> }
<super_block_content> ::= TBD
<root_group> ::= GROUP "/" { <unamed_datatype>* <object_id>opt <group_attribute>* <group_member>* }
<unamed_datatype> ::= DATATYPE <unamed_type_name> { <compound_type> }
<unamed_type_name> ::= the assigned name for unamed type is in the form of
#oid1:oid2, where oid1 and oid2 are the object ids of the type
<variable_length_type> ::= H5T_VLEN of <atomic_type>
<compound_type> ::= <member_type_def>+
<member_type_def> ::= <scalar_type_def> | <array_type_def>
<scalar_type_def> ::= <atomic_type> <field_name> ;
<atomic_type> ::= <integer> | <float> | <time> | <string> | <bitfield> | <opaque> |
<reference> | <enum>
<integer> ::= H5T_STD_I8BE | H5T_STD_I8LE | H5T_STD_I16BE | H5T_STD_I16LE | H5T_STD_I32BE |
H5T_STD_I32LE | H5T_STD_I64BE | H5T_STD_I64LE | H5T_STD_U8BE |
H5T_STD_U8LE | H5T_STD_U16BE | H5T_STD_U16LE | H5T_STD_U32BE |
H5T_STD_U32LE | H5T_STD_U64BE | H5T_STD_U64LE | H5T_NATIVE_CHAR |
H5T_NATIVE_UCHAR | H5T_NATIVE_SHORT | H5T_NATIVE_USHORT |
H5T_NATIVE_INT | H5T_NATIVE_UINT | H5T_NATIVE_LONG | H5T_NATIVE_ULONG |
H5T_NATIVE_LLONG | H5T_NATIVE_ULLONG
<float> ::= H5T_IEEE_F32BE | H5T_IEEE_F32LE | H5T_IEEE_F64BE | H5T_IEEE_F64LE |
H5T_NATIVE_FLOAT | H5T_NATIVE_DOUBLE | H5T_NATIVE_LDOUBLE
<time> ::= TBD
<string> ::= { STRSIZE <strsize> ;
STRPAD <strpad> ;
CSET <cset> ;
CTYPE <ctype> ; }
<strsize> ::= an integer
<strpad> ::= H5T_STR_NULLTERM | H5T_STR_NULLPAD | H5T_STR_SPACEPAD
<cset> ::= H5T_CSET_ASCII
<ctype> ::= H5T_C_S1 | H5T_FORTRAN_S1
<bitfield> ::= TBD
<opaque> ::= { H5T_OPAQUE; OPAQUE_TAG <identifier>; }
<reference> ::= H5T_REFERENCE
<field_name> ::= <identifier>
<array_type_def> ::= <atomic_type> <field_name> <dim_sizes> ;
<dim_sizes> ::= [dimsize1][dimsize2]..., where dimsize1, dimsize2 are integers
<group_attribute> ::= <attribute>
<attribute> ::= ATTRIBUTE <attr_name> { <datatype>
<dataspace>
<object_id>opt
<data>opt }
// <datatype> and <dataspace> must appear before <data>.
<attr_name> ::= <identifier>
<datatype> ::= DATATYPE { <atomic_type> } |
DATATYPE { <compound_type> } |
DATATYPE { <variable_length_type> } |
DATATYPE { <named_type> }
<enum> ::= H5T_ENUM { <integer>; <enum_def>+ }
<enum_def> ::= <enum_symbol> <enum_val>;
<enum_symbol> ::= <identifier>
<enum_val> ::= an integer;
<named_type> ::= <path_name>
<path_name> ::= <identifier>
<dataspace> ::= DATASPACE { SCALAR } |
DATASPACE { SIMPLE <current_dims> / <max_dims> } |
DATASPACE { COMPLEX <ds_definition>+ } |
DATASPACE { <dataspace_name> }
<current_dims> ::= (i1, i2, ... ), where ik is an integer, k = 1,2,...
<max_dims> ::= (i1, i2, ... ) where ik is an integer or H5S_UNLIMITED
<ds_definition> ::= TBD
<dataspace_name> ::= <identifier>
<data> ::= DATA { <scalar_space_data> |
<simple_space_data> |
<complex_space_data> |
<variable_length_space_data> }
<scalar_space_data> ::= <atomic_scalar_data> | <compound_scalar_data>
<atomic_scalar_data> :: = <integer_data> | <float_data> | <time_data> | <string_data> |
<bitfield_data> | <opaque_data> | <enum_data> | <reference_data>
<integer_data> ::= an integer
<float_data> ::= a floating point number
<time_data> ::= TBD
<string_data> ::= a string
// A string is enclosed in double quotes.
// If a string is displayed on more than one line, string concatenate operator '//'is used.
<bitfield_data> ::= TBD
<opaque_data> ::= TBD
<enum_data> ::= <enum_symbol>
//maybe will be <enum_symbol> in the future
<reference_data> ::= <object_ref_data> | <data_region_data> | NULL
<object_ref_data> ::= <object_type> <object_num>
<object_type> ::= DATASET | GROUP | DATATYPE
<object_id> ::= OBJECTID { <object_num> }
<object_num> ::= an integer:an integer | an integer
<data_region_data> ::= H5T_STD_REF_DSETREG <object_num> {<data_region_data_info>,
<data_region_data_info>, ...}
<data_region_data_info> ::= <region_info> | <point_info>
<region_info> ::= (<lower_bound>:<upper_bound>, <lower_bound>:<upper_bound>, ...)
<lower_bound> ::= an integer
<upper_bound> ::= an integer
<point_info> ::= (an integer, an integer, ...)
<compound_scalar_data> ::= { [ <member_data> ], [ <member_data> ], ... }
<member_data> ::= <atomic_scalar_data> | <atomic_simple_data>
<atomic_simple_data> :: = <atomic_element>, <atomic_simple_data> | <atomic_element>
<atomic_element> ::= <atomic_scalar_data>
<simple_space_data> :: = <atomic_simple_data> | <compound_simple_data>
<variable_length_space_data> ::= <atomic_simple_data>
<compound_simple_data> ::= <compoud_element>, <compound_element>, ...
<compound_element> ::= <compound_scalar_data>
<complex_space_data> ::= TBD
<group_member> ::= <named_datatype> | <named_dataspace> | <group> | <dataset> |
<softlink>
<named_datatype> ::= DATATYPE <type_name> { <compound_type> }
<type_name> ::= <identifier>
<named_dataspace> ::= TBD
<group> ::= GROUP <group_name> { <hardlink> } |
GROUP <object_id>opt <group_name> { <group_attribute>* <group_member>* }
<group_name> ::= <identifier>
<hardlink> ::= HARDLINK <path_name>
<dataset> ::= DATASET <dataset_name> { <hardlink> } |
DATASET <dataset_name> { <datatype>
<dataspace>
<storagelayout>opt
<compression>opt
<dataset_attribute>*
<object_id>opt
<data>opt }
// Tokens within {} can be in any order as long as <data> and <dataset_attribute>
// are after <datatype> and <dataspace>.
<dataset_name> ::= <identifier>
<storagelayout> :: = STORAGELAYOUT <contiguous_layout> |
STORAGELAYOUT <chunked_layout> |
STORAGELAYOUT <compact_layout> |
STORAGELAYOUT <external_layout>
<contiguous_layout> ::= {CONTIGUOUS} // default
<chunked_layout> ::= {CHUNKED <dims> }
<dims> ::= (i1, i2, ... ), ik is an integer, k = 1,2,...
<compact_layout> ::= TBD
<external_layout> ::= {EXTERNAL <external_file>+ }
<external_file> ::= (<file_name> <offset> <size>)
<offset> ::= an integer
<size> ::= an integer
<compression> :: = COMPRESSION { TBD }
<dataset_attribute> ::= <attribute>
<softlink> ::= SOFTLINK <softlink_name> { LINKTARGET <target> }
<softlink_name> ::= <identifier>
<target> ::= <identifier>
<identifier> ::= string
// character '/' should be used with care.
HDF5 "example.h5" {
GROUP "/" {
ATTRIBUTE "attr1" {
DATATYPE {
{ STRSIZE 17;
STRPAD H5T_STR_NULLTERM;
CSET H5T_CSET_ASCII;
CTYPE H5T_C_S1;
}
}
DATASPACE { SCALAR }
DATA {
"string attribute"
}
}
DATASET "dset1" {
DATATYPE { H5T_STD_I32BE }
DATASPACE { SIMPLE ( 10, 10 ) / ( 10, 10 ) }
DATA {
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
0, 1, 2, 3, 4, 5, 6, 7, 8, 9
}
}
DATASET "dset2" {
DATATYPE {
H5T_STD_I32BE "a";
H5T_IEEE_F32BE "b";
H5T_IEEE_F64BE "c";
}
DATASPACE { SIMPLE ( 5 ) / ( 5 ) }
DATA {
{
[ 1 ],
[ 0.1 ],
[ 0.01 ]
},
{
[ 2 ],
[ 0.2 ],
[ 0.02 ]
},
{
[ 3 ],
[ 0.3 ],
[ 0.03 ]
},
{
[ 4 ],
[ 0.4 ],
[ 0.04 ]
},
{
[ 5 ],
[ 0.5 ],
[ 0.05 ]
}
}
}
GROUP "group1" {
DATASET "dset3" {
DATATYPE {
"/type1"
}
DATASPACE { SIMPLE ( 5 ) / ( 5 ) }
DATA {
{
[ 0, 1, 2, 3 ],
[ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
},
{
[ 0, 1, 2, 3 ],
[ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
},
{
[ 0, 1, 2, 3 ],
[ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
},
{
[ 0, 1, 2, 3 ],
[ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
},
{
[ 0, 1, 2, 3 ],
[ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
}
}
}
}
DATASET "dset3" {
DATATYPE { H5T_VLEN of H5T_STD_I32LE }
DATASPACE { SIMPLE ( 4 ) / ( 4 ) }
DATA {
0
10, 11
20, 21, 22
30, 31, 32, 33
}
}
GROUP "group2" {
HARDLINK "/group1"
}
SOFTLINK "slink1" {
LINKTARGET "somevalue"
}
DATATYPE "type1" {
H5T_STD_I32BE "a"[4];
H5T_IEEE_F32BE "b"[5][6];
}
}
}