/* * This example reads hyperslab from the SDS.h5 file * created by h5_write.c program into two-dimensional * plane of the tree-dimensional array. * Information about dataset in the SDS.h5 file is obtained. */ #include "hdf5.h" #define FILE "SDS.h5" #define DATASETNAME "IntArray" #define NX_SUB 3 /* hyperslab dimensions */ #define NY_SUB 4 #define NX 7 /* output buffer dimensions */ #define NY 7 #define NZ 3 #define RANK 2 #define RANK_OUT 3 main () { hid_t file, dataset; /* handles */ hid_t datatype, dataspace; hid_t memspace; H5T_class_t class; /* data type class */ H5T_order_t order; /* data order */ size_t size; /* size of the data element stored in file */ size_t dimsm[3]; /* memory space dimensions */ size_t dims_out[2]; /* dataset dimensions */ herr_t status; int data_out[NX][NY][NZ ]; /* output buffer */ size_t count[2]; /* size of the hyperslab in the file */ int offset[2]; /* hyperslab offset in the file */ size_t count_out[3]; /* size of the hyperslab in memory */ int offset_out[3]; /* hyperslab offset in memory */ int i, j, k, status_n, rank; for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) { for (k = 0; k < NZ ; k++) data_out[j][i][k] = 0; } } /* * Open the file and the dataset. */ file = H5Fopen(FILE, H5ACC_DEFAULT, H5C_DEFAULT); dataset = H5Dopen(file, DATASETNAME); /* * Get datatype and dataspace handles and then query * dataset class, order, size, rank and dimensions. */ datatype = H5Dget_type(dataset); /* datatype handle */ class = H5Tget_class(datatype); if (class == H5T_INTEGER) printf("Data set has INTEGER type \n"); order = H5Tget_order(datatype); if (order == H5T_ORDER_LE) printf("Little endian order \n"); size = H5Tget_size(datatype); printf(" Data size is %d \n", size); dataspace = H5Dget_space(dataset); /* dataspace handle */ rank = H5Pget_ndims(dataspace); status_n = H5Pget_dims(dataspace, dims_out); printf("rank %d, dimensions %d x %d \n", rank, dims_out[0], dims_out[1]); /* * Define hyperslab in the datatset. */ offset[0] = 1; offset[1] = 2; count[0] = NX_SUB; count[1] = NY_SUB; status = H5Pset_hyperslab(dataspace, offset, count, NULL); /* * Define the memory dataspace. */ dimsm[0] = NX; dimsm[1] = NY; dimsm[2] = NZ ; memspace = H5Pcreate_simple(RANK_OUT,dimsm,NULL); /* * Define memory hyperslab. */ offset_out[0] = 3; offset_out[1] = 0; offset_out[2] = 0; count_out[0] = NX_SUB; count_out[1] = NY_SUB; count_out[2] = 1; status = H5Pset_hyperslab(memspace, offset_out, count_out, NULL); /* * Read data from hyperslab in the file into the hyperslab in * memory and display. */ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace, H5C_DEFAULT, data_out); for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]); printf("\n"); } /* 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 5 6 0 0 0 4 5 6 7 0 0 0 5 6 7 8 0 0 0 0 0 0 0 0 0 0 */ /* * Close/release resources. */ H5Tclose(datatype); H5Dclose(dataset); H5Pclose(dataspace); H5Pclose(memspace); H5Fclose(file); }