/************************************************************ This example illustrates the concept of the virtual dataset. Percival use case. Every fifth 10x10 plane in VDS is stored in the corresponding 3D unlimited dataset. There are 4 source datasets total. This file is intended for use with HDF5 Library version 1.10 ************************************************************/ /* EIP Add link to the picture */ #include "hdf5.h" #include #include #define FILE "vds-percival-unlim.h5" #define DATASET "VDS-Percival-unlim" #define VDSDIM0 H5S_UNLIMITED #define VDSDIM1 10 #define VDSDIM2 10 #define DIM0 H5S_UNLIMITED #define DIM0_1 10 /* Initial size of the datasets */ #define DIM1 10 #define DIM2 10 #define RANK 3 #define PLANE_STRIDE 4 const char *SRC_FILE[] = { "a.h5", "b.h5", "c.h5", "d.h5" }; const char *SRC_DATASET[] = { "A", "B", "C", "D" }; int main (void) { hid_t vfile, file, src_space, mem_space, vspace, vdset, dset; /* Handles */ hid_t dcpl; herr_t status; hsize_t vdsdims[3] = {4*DIM0_1, VDSDIM1, VDSDIM2}, vdsdims_max[3] = {VDSDIM0, VDSDIM1, VDSDIM2}, dims[3] = {DIM0_1, DIM1, DIM2}, extdims[3] = {2*DIM0_1, DIM1, DIM2}, chunk_dims[3] = {DIM0_1, DIM1, DIM2}, dims_max[3] = {DIM0, DIM1, DIM2}, vdsdims_out[3], vdsdims_max_out[3], start[3], /* Hyperslab parameters */ stride[3], count[3], src_count[3], block[3]; hsize_t start_out[3], /* Hyperslab parameter out */ stride_out[3], count_out[3], block_out[3]; int i, j; H5D_layout_t layout; /* Storage layout */ size_t num_map; /* Number of mappings */ ssize_t len; /* Length of the string; also a return value */ char *filename; char *dsetname; int wdata[DIM0_1*DIM1*DIM2]; /* * Create source files and datasets. This step is optional. */ for (i=0; i < PLANE_STRIDE; i++) { /* * Initialize data for i-th source dataset. */ for (j = 0; j < DIM0_1*DIM1*DIM2; j++) wdata[j] = i+1; /* * Create the source files and datasets. Write data to each dataset and * close all resources. */ file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); src_space = H5Screate_simple (RANK, dims, dims_max); dcpl = H5Pcreate(H5P_DATASET_CREATE); status = H5Pset_chunk (dcpl, RANK, chunk_dims); dset = H5Dcreate (file, SRC_DATASET[i], H5T_NATIVE_INT, src_space, H5P_DEFAULT, dcpl, H5P_DEFAULT); status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); status = H5Sclose (src_space); status = H5Pclose (dcpl); status = H5Dclose (dset); status = H5Fclose (file); } file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* Create VDS dataspace. */ vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max); /* Create dataspaces for the source dataset. */ src_space = H5Screate_simple (RANK, dims, dims_max); /* Create VDS creation property */ dcpl = H5Pcreate (H5P_DATASET_CREATE); /* Initialize hyperslab values */ start[0] = 0; start[1] = 0; start[2] = 0; stride[0] = PLANE_STRIDE; /* we will select every fifth plane in VDS */ stride[1] = 1; stride[2] = 1; count[0] = H5S_UNLIMITED; count[1] = 1; count[2] = 1; src_count[0] = H5S_UNLIMITED; src_count[1] = 1; src_count[2] = 1; block[0] = 1; block[1] = DIM1; block[2] = DIM2; /* * Build the mappings * */ status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, src_count, block); for (i=0; i < PLANE_STRIDE; i++) { status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block); status = H5Pset_virtual (dcpl, vspace, SRC_FILE[i], SRC_DATASET[i], src_space); start[0]++; } H5Sselect_none(vspace); /* Create a virtual dataset */ vdset = H5Dcreate (vfile, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT, dcpl, H5P_DEFAULT); status = H5Sclose (vspace); status = H5Sclose (src_space); /* Let's get space of the VDS and its dimension; we should get 40x10x10 */ vspace = H5Dget_space (vdset); H5Sget_simple_extent_dims (vspace, vdsdims_out, vdsdims_max_out); printf ("VDS dimensions first time \n"); printf (" Current: "); for (i=0; i