/* * h5ff_client_attr.c: Client side test for attribute routines. */ #include #include #include #include #include "mpi.h" #include "hdf5.h" int main(int argc, char **argv) { char file_name[50]; hid_t file_id; hid_t gid1; hid_t sid, dtid, stype_id; hid_t sid2; hid_t did1, map; hid_t aid1, aid2, aid3, aid4, aid5; hid_t tid1, tid2, rid1, rid2, rid3; hid_t fapl_id, trspl_id; hid_t e_stack; hbool_t exists1; hbool_t exists2; uint64_t version; uint64_t trans_num; int *wdata1 = NULL, *wdata2 = NULL; int *rdata1 = NULL, *rdata2 = NULL; char str_data[128]; const unsigned int nelem=60; hsize_t dims[1]; int my_rank, my_size; int provided; MPI_Request mpi_req; uint32_t cs_scope = 0; size_t num_events = 0; H5ES_status_t status; unsigned int i = 0; herr_t ret; sprintf(file_name, "%s_%s", getenv("USER"), "eff_file_attr.h5"); MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &provided); if(MPI_THREAD_MULTIPLE != provided) { fprintf(stderr, "MPI does not have MPI_THREAD_MULTIPLE support\n"); exit(1); } /* Call EFF_init to initialize the EFF stack. */ EFF_init(MPI_COMM_WORLD, MPI_INFO_NULL); MPI_Comm_rank(MPI_COMM_WORLD, &my_rank); MPI_Comm_size(MPI_COMM_WORLD, &my_size); fprintf(stderr, "APP processes = %d, my rank is %d\n", my_size, my_rank); /* Choose the IOD VOL plugin to use with this file. */ fapl_id = H5Pcreate (H5P_FILE_ACCESS); H5Pset_fapl_iod(fapl_id, MPI_COMM_WORLD, MPI_INFO_NULL); /* set the metada data integrity checks to happend at transfer through mercury */ cs_scope |= H5_CHECKSUM_TRANSFER; ret = H5Pset_metadata_integrity_scope(fapl_id, cs_scope); assert(ret == 0); /* allocate and initialize arrays for dataset I/O */ wdata1 = malloc (sizeof(int32_t)*nelem); wdata2 = malloc (sizeof(int32_t)*nelem); rdata1 = malloc (sizeof(int32_t)*nelem); rdata2 = malloc (sizeof(int32_t)*nelem); for(i=0;i 0); /* create 1-D dataspace with 60 elements */ dims [0] = nelem; sid = H5Screate_simple(1, dims, NULL); dtid = H5Tcopy(H5T_STD_I32LE); stype_id = H5Tcopy(H5T_C_S1 ); assert( stype_id ); ret = H5Tset_strpad(stype_id, H5T_STR_NULLTERM ); assert( ret == 0 ); ret = H5Tset_size(stype_id, 128); assert( ret == 0 ); /* start transaction 2 with default Leader/Delegate model. Leader which is rank 0 here starts the transaction. It can be asynchronous, but we make it synchronous here so that the Leader can tell its delegates that the transaction is started. */ if(0 == my_rank) { /* acquire container version 1 - EXACT. This can be asynchronous, but here we need the acquired ID right after the call to start the transaction so we make synchronous. */ version = 1; rid1 = H5RCacquire(file_id, &version, H5P_DEFAULT, H5_EVENT_STACK_NULL); /* create transaction object */ tid1 = H5TRcreate(file_id, rid1, (uint64_t)2); assert(tid1); ret = H5TRstart(tid1, H5P_DEFAULT, e_stack); assert(0 == ret); sid2 = H5Screate(H5S_SCALAR); assert( sid2 ); /* create group /G1 */ gid1 = H5Gcreate_ff(file_id, "G1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(gid1 > 0); /* create dataset /G1/D1 */ did1 = H5Dcreate_ff(gid1, "D1", dtid, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(did1 > 0); /* Commit the datatype dtid to the file. */ ret = H5Tcommit_ff(file_id, "DT1", dtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(ret == 0); /* create a Map object on the root group */ map = H5Mcreate_ff(file_id, "MAP1", H5T_STD_I32LE, H5T_STD_I32LE, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT, tid1, e_stack); assert(map > 0); /* create an attribute on root group */ aid1 = H5Acreate_ff(file_id, "ROOT_ATTR", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(aid1); /* create an attribute on group G1. */ aid2 = H5Acreate_ff(gid1, "GROUP_ATTR", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(aid2); /* write data to attributes */ ret = H5Awrite_ff(aid1, dtid, wdata1, tid1, e_stack); assert(ret == 0); ret = H5Awrite_ff(aid2, dtid, wdata2, tid1, e_stack); assert(ret == 0); /* create an attribute on dataset */ aid3 = H5Acreate_ff(did1, "DSET_ATTR", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(aid3); /* create an attribute on datatype */ aid4 = H5Acreate_ff(dtid, "DTYPE_ATTR", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, tid1, e_stack); assert(aid4); aid5 = H5Acreate_ff(map, "MAP_ATTR", stype_id, sid2, H5P_DEFAULT, H5P_DEFAULT, tid1, H5_EVENT_STACK_NULL ); assert(aid5); ret = H5Awrite_ff(aid5, stype_id, "/AA by rank 0", tid1, H5_EVENT_STACK_NULL ); assert( ret == 0 ); H5Sclose(sid2); { hid_t temp_sid; temp_sid = H5Aget_space(aid5); assert(temp_sid > 0); H5Sclose(temp_sid); } ret = H5Aclose_ff(aid1, e_stack); assert(ret == 0); /* make this synchronous so we know the container version has been acquired */ ret = H5TRfinish(tid1, H5P_DEFAULT, &rid2, H5_EVENT_STACK_NULL); assert(0 == ret); /* release container version 1. This is async. */ ret = H5RCrelease(rid1, e_stack); assert(0 == ret); } H5ESget_count(e_stack, &num_events); H5ESwait_all(e_stack, &status); H5ESclear(e_stack); printf("%d events in event stack. Completion status = %d\n", num_events, status); if(0 != num_events) assert(status == H5ES_STATUS_SUCCEED); if(0 == my_rank) { /* Local op */ ret = H5TRclose(tid1); assert(0 == ret); /* create transaction object */ tid2 = H5TRcreate(file_id, rid2, (uint64_t)3); assert(tid2); ret = H5TRstart(tid2, H5P_DEFAULT, e_stack); assert(0 == ret); /* Delete an attribute */ ret = H5Adelete_ff(file_id, "ROOT_ATTR", tid2, e_stack); assert(ret == 0); /* rename an attribute */ ret = H5Arename_ff(gid1, "GROUP_ATTR", "RENAMED_GROUP_ATTR", tid2, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid2, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid3, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid4, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid5, e_stack); assert(ret == 0); ret = H5Dclose_ff(did1, e_stack); assert(ret == 0); ret = H5Mclose_ff(map, e_stack); assert(ret == 0); ret = H5Gclose_ff(gid1, e_stack); assert(ret == 0); /* make this synchronous so we know the container version has been acquired */ ret = H5TRfinish(tid2, H5P_DEFAULT, &rid3, H5_EVENT_STACK_NULL); assert(0 == ret); /* release container version 2. This is async. */ ret = H5RCrelease(rid2, e_stack); assert(0 == ret); version = 3; } H5ESget_count(e_stack, &num_events); H5ESwait_all(e_stack, &status); H5ESclear(e_stack); printf("%d events in event stack. Completion status = %d\n", num_events, status); if(0 != num_events) assert(status == H5ES_STATUS_SUCCEED); /* Tell other procs that container version 3 is acquired */ MPI_Bcast(&version, 1, MPI_UINT64_T, 0, MPI_COMM_WORLD); /* other processes just create a read context object; no need to acquire it */ if(0 != my_rank) { assert(3 == version); rid3 = H5RCcreate(file_id, version); assert(rid3 > 0); } /* do some reads/gets from container version 1 */ ret = H5Aexists_ff(file_id, "ROOT_ATTR", &exists1, rid3, e_stack); assert(ret == 0); ret = H5Aexists_by_name_ff(file_id, "G1", "RENAMED_GROUP_ATTR", H5P_DEFAULT, &exists2, rid3, e_stack); assert(ret == 0); gid1 = H5Gopen_ff(file_id, "G1", H5P_DEFAULT, rid3, e_stack); aid2 = H5Aopen_ff(gid1, "RENAMED_GROUP_ATTR", H5P_DEFAULT, rid3, e_stack); assert(aid2); ret = H5Aread_ff(aid2, dtid, rdata2, rid3, e_stack); assert(ret == 0); aid5 = H5Aopen_by_name_ff(file_id, "MAP1", "MAP_ATTR", H5P_DEFAULT, H5P_DEFAULT, rid3, e_stack); assert(aid5); ret = H5Aread_ff(aid5, stype_id, str_data, rid3, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid2, e_stack); assert(ret == 0); ret = H5Aclose_ff(aid5, e_stack); assert(ret == 0); ret = H5Gclose_ff(gid1, e_stack); assert(ret == 0); H5ESget_count(e_stack, &num_events); H5ESwait_all(e_stack, &status); H5ESclear(e_stack); printf("%d events in event stack. Completion status = %d\n", num_events, status); if(0 != num_events) assert(status == H5ES_STATUS_SUCCEED); /* barrier so root knows all are done reading */ MPI_Barrier(MPI_COMM_WORLD); if(my_rank == 0) { /* Local op */ ret = H5TRclose(tid2); assert(0 == ret); /* release container version 3. This is async. */ ret = H5RCrelease(rid3, e_stack); assert(0 == ret); } ret = H5Sclose(sid); assert(ret == 0); ret = H5Tclose(dtid); assert(ret == 0); ret = H5Tclose(stype_id); assert(ret == 0); ret = H5Pclose(fapl_id); assert(ret == 0); H5Fclose_ff(file_id, 1, H5_EVENT_STACK_NULL); H5ESget_count(e_stack, &num_events); H5ESwait_all(e_stack, &status); H5ESclear(e_stack); printf("%d events in event stack. Completion status = %d\n", num_events, status); if(0 != num_events) assert(status == H5ES_STATUS_SUCCEED); if(0 == my_rank) { ret = H5RCclose(rid1); assert(0 == ret); ret = H5RCclose(rid2); assert(0 == ret); } ret = H5RCclose(rid3); assert(0 == ret); assert(!exists1); assert(exists2); fprintf(stderr, "RENAMED_GROUP_ATTR value: "); for(i=0;i