!****h* root/fortran/test/tH5R.f90 ! ! NAME ! tH5R.f90 ! ! FUNCTION ! Basic testing of Fortran H5R, Reference Interface, APIs. ! ! COPYRIGHT ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! Copyright by The HDF Group. * ! All rights reserved. * ! * ! This file is part of HDF5. The full HDF5 copyright notice, including * ! terms governing use, modification, and redistribution, is contained in * ! the COPYING file, which can be found at the root of the source code * ! distribution tree, or in https://www.hdfgroup.org/licenses. * ! If you do not have access to either file, you may request a copy from * ! help@hdfgroup.org. * ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! ! NOTES ! Tests h5rcreate_f, h5rdereference_f, h5rget_name_f ! and H5Rget_object_type functions ! ! CONTAINS SUBROUTINES ! refobjtest, refregtest ! !***** ! MODULE TH5R USE HDF5 USE TH5_MISC USE TH5_MISC_GEN CONTAINS SUBROUTINE refobjtest(cleanup, total_error) IMPLICIT NONE LOGICAL, INTENT(IN) :: cleanup INTEGER, INTENT(INOUT) :: total_error CHARACTER(LEN=9), PARAMETER :: filename = "reference" CHARACTER(LEN=80) :: fix_filename CHARACTER(LEN=8), PARAMETER :: dsetnamei = "INTEGERS" CHARACTER(LEN=17), PARAMETER :: dsetnamer = "OBJECT_REFERENCES" CHARACTER(LEN=6), PARAMETER :: groupname1 = "GROUP1" CHARACTER(LEN=6), PARAMETER :: groupname2 = "GROUP2" INTEGER(HID_T) :: file_id ! File identifier INTEGER(HID_T) :: grp1_id ! Group identifier INTEGER(HID_T) :: grp2_id ! Group identifier INTEGER(HID_T) :: dset1_id ! Dataset identifier INTEGER(HID_T) :: dsetr_id ! Dataset identifier INTEGER(HID_T) :: type_id ! Type identifier INTEGER(HID_T) :: space_id ! Dataspace identifier INTEGER(HID_T) :: spacer_id ! Dataspace identifier INTEGER :: error, obj_type INTEGER(HSIZE_T), DIMENSION(1) :: dims = (/5/) INTEGER(HSIZE_T), DIMENSION(1) :: dimsr= (/4/) INTEGER(HSIZE_T), DIMENSION(1) :: my_maxdims = (/5/) INTEGER :: rank = 1 INTEGER :: rankr = 1 TYPE(hobj_ref_t_f), DIMENSION(4) :: ref TYPE(hobj_ref_t_f), DIMENSION(4) :: ref_out INTEGER(HSIZE_T), DIMENSION(1) :: ref_dim INTEGER, DIMENSION(5) :: DATA = (/1, 2, 3, 4, 5/) INTEGER(HSIZE_T), DIMENSION(2) :: data_dims CHARACTER(LEN=7) :: buf ! buffer to hold the region name CHARACTER(LEN=16) :: buf_big ! buffer bigger then needed INTEGER(SIZE_T) :: buf_size ! returned size of the region buffer name ! !Create a new file with Default file access and !file creation properties . ! CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error) IF (error .NE. 0) THEN WRITE(*,*) "Cannot modify filename" STOP ENDIF CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file_id, error) CALL check("h5fcreate_f",error,total_error) ! ! Create a group inside the file ! CALL h5gcreate_f(file_id, groupname1, grp1_id, error) CALL check("h5gcreate_f",error,total_error) ! ! Create a group inside the group GROUP1 ! CALL h5gcreate_f(grp1_id, groupname2, grp2_id, error) CALL check("h5gcreate_f",error,total_error) ! ! Create dataspaces for datasets ! CALL h5screate_simple_f(rank, dims, space_id, error, maxdims=my_maxdims) CALL check("h5screate_simple_f",error,total_error) CALL h5screate_simple_f(rankr, dimsr, spacer_id, error) CALL check("h5screate_simple_f",error,total_error) ! ! Create integer dataset ! CALL h5dcreate_f(file_id, dsetnamei, H5T_NATIVE_INTEGER, space_id, & dset1_id, error) CALL check("h5dcreate_f",error,total_error) ! ! Create dataset to store references to the objects ! CALL h5dcreate_f(file_id, dsetnamer, H5T_STD_REF_OBJ, spacer_id, & dsetr_id, error) CALL check("h5dcreate_f",error,total_error) ! ! Create a datatype and store in the file ! CALL h5tcopy_f(H5T_NATIVE_REAL, type_id, error) CALL check("h5tcopy_f",error,total_error) CALL h5tcommit_f(file_id, "MyType", type_id, error) CALL check("h5tcommit_f",error,total_error) ! ! Close dataspaces, groups and integer dataset ! CALL h5sclose_f(space_id, error) CALL check("h5sclose_f",error,total_error) CALL h5sclose_f(spacer_id, error) CALL check("h5sclose_f",error,total_error) CALL h5dclose_f(dset1_id, error) CALL check("h5dclose_f",error,total_error) CALL h5tclose_f(type_id, error) CALL check("h5tclose_f",error,total_error) CALL h5gclose_f(grp1_id, error) CALL check("h5gclose_f",error,total_error) CALL h5gclose_f(grp2_id, error) CALL check("h5gclose_f",error,total_error) ! ! Create references to two groups, integer dataset and shared datatype ! and write it to the dataset in the file ! CALL h5rcreate_f(file_id, groupname1, ref(1), error) CALL check("h5rcreate_f",error,total_error) CALL h5rcreate_f(file_id, "/GROUP1/GROUP2", ref(2), error) CALL check("h5rcreate_f",error,total_error) CALL h5rcreate_f(file_id, dsetnamei, ref(3), error) CALL check("h5rcreate_f",error,total_error) CALL h5rcreate_f(file_id, "MyType", ref(4), error) CALL check("h5rcreate_f",error,total_error) ref_dim(1) = SIZE(ref) CALL h5dwrite_f(dsetr_id, H5T_STD_REF_OBJ, ref, ref_dim, error) CALL check("h5dwrite_f",error,total_error) ! getting path to normal dataset in root group CALL H5Rget_name_f(dsetr_id, ref(1), buf, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),7, total_error) CALL verify("H5Rget_name_f", buf, "/GROUP1", total_error) ! with buffer bigger then needed CALL H5Rget_name_f(dsetr_id, ref(1), buf_big, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),7,total_error) CALL verify("H5Rget_name_f", TRIM(buf_big), "/GROUP1", total_error) ! getting path to dataset in /Group1 CALL H5Rget_name_f(dsetr_id, ref(2), buf_big, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),14,total_error) CALL verify("H5Rget_name_f", TRIM(buf_big), "/GROUP1/GROUP2", total_error) ! !Close the dataset ! CALL h5dclose_f(dsetr_id, error) CALL check("h5dclose_f",error,total_error) ! ! Reopen the dataset with object references ! CALL h5dopen_f(file_id, dsetnamer,dsetr_id,error) CALL check("h5dopen_f",error,total_error) ref_dim(1) = SIZE(ref_out) CALL h5dread_f(dsetr_id, H5T_STD_REF_OBJ, ref_out, ref_dim, error) CALL check("h5dread_f",error,total_error) ! !get the third reference's type and Dereference it ! CALL h5rget_object_type_f(dsetr_id, ref(3), obj_type, error) CALL check("h5rget_object_type_f",error,total_error) IF (obj_type == H5G_DATASET_F) THEN CALL h5rdereference_f(dsetr_id, ref(3), dset1_id, error) CALL check("h5rdereference_f",error,total_error) data_dims(1) = 5 CALL h5dwrite_f(dset1_id, H5T_NATIVE_INTEGER, DATA, data_dims, error) CALL check("h5dwrite_f",error,total_error) END IF ! !get the fourth reference's type and Dereference it ! CALL h5rget_object_type_f(dsetr_id, ref(4), obj_type, error) CALL check("h5rget_object_type_f",error,total_error) IF (obj_type == H5G_TYPE_F) THEN CALL h5rdereference_f(dsetr_id, ref(4), type_id, error) CALL check("h5rdereference_f",error,total_error) END IF ! ! Close all objects. ! CALL h5dclose_f(dset1_id, error) CALL check("h5dclose_f",error,total_error) CALL h5tclose_f(type_id, error) CALL check("h5tclose_f",error,total_error) CALL h5dclose_f(dsetr_id, error) CALL check("h5dclose_f",error,total_error) CALL h5fclose_f(file_id, error) CALL check("h5fclose_f",error,total_error) IF(cleanup) CALL h5_cleanup_f(filename, H5P_DEFAULT_F, error) CALL check("h5_cleanup_f", error, total_error) RETURN END SUBROUTINE refobjtest ! ! The following subroutine tests h5rget_region_f, h5rcreate_f, h5rget_name_f, ! and h5rdereference_f functionalities ! SUBROUTINE refregtest(cleanup, total_error) IMPLICIT NONE LOGICAL, INTENT(IN) :: cleanup INTEGER, INTENT(INOUT) :: total_error CHARACTER(LEN=6), PARAMETER :: filename = "Refreg" CHARACTER(LEN=80) :: fix_filename CHARACTER(LEN=6), PARAMETER :: dsetnamev = "MATRIX" CHARACTER(LEN=17), PARAMETER :: dsetnamer = "REGION_REFERENCES" CHARACTER(LEN=7) :: buf ! buffer to hold the region name CHARACTER(LEN=11) :: buf_big ! buffer bigger then needed CHARACTER(LEN=4) :: buf_small ! buffer smaller then needed INTEGER(SIZE_T) :: buf_size ! returned size of the region buffer name INTEGER(HID_T) :: file_id ! File identifier INTEGER(HID_T) :: space_id ! Dataspace identifier INTEGER(HID_T) :: spacer_id ! Dataspace identifier INTEGER(HID_T) :: dsetv_id ! Dataset identifier INTEGER(HID_T) :: dsetr_id ! Dataset identifier INTEGER :: error ! TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2), TARGET :: ref TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2) :: ref TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2) :: ref_out INTEGER(HSIZE_T), DIMENSION(2) :: ref_dim = (/0,0/) INTEGER(HSIZE_T), DIMENSION(2) :: data_dims ! = (/0,0/) INTEGER(HSIZE_T), DIMENSION(2) :: dims = (/2,9/) ! Datasets dimensions INTEGER(HSIZE_T), DIMENSION(1) :: dimsr = (/2/) ! INTEGER(HSIZE_T), DIMENSION(2) :: start ! = (/0,0/) INTEGER(HSIZE_T), DIMENSION(2) :: count ! = (/0,0/) INTEGER :: rankr = 1 INTEGER :: rank = 2 ! INTEGER , DIMENSION(2,9), TARGET :: DATA INTEGER , DIMENSION(2,9) :: DATA INTEGER , DIMENSION(2,9) :: data_out = 0 INTEGER(HSIZE_T) , DIMENSION(2,3) :: coord INTEGER(SIZE_T) ::num_points = 3 ! Number of selected points ! type(c_ptr) :: f_ptr coord = RESHAPE((/1,1,2,7,1,9/), (/2,3/)) ! Coordinates of selected points DATA = RESHAPE ((/1,1,1,2,2,2,3,3,3,4,4,4,5,5,5,6,6,6/), (/2,9/)) ref_out(1)%ref = 0 ref_out(2)%ref = 0 ! ! Initialize FORTRAN predefined datatypes. ! ! CALL h5init_types_f(error) ! CALL check("h5init_types_f", error, total_error) ! ! Create a new file. ! CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error) IF (error .NE. 0) THEN WRITE(*,*) "Cannot modify filename" STOP ENDIF CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file_id, error) ! Default file access and file creation ! properties are used. CALL check("h5fcreate_f", error, total_error) ! ! Create dataspaces: ! ! for dataset with references to dataset regions ! CALL h5screate_simple_f(rankr, dimsr, spacer_id, error) CALL check("h5screate_simple_f", error, total_error) ! ! for integer dataset ! CALL h5screate_simple_f(rank, dims, space_id, error) CALL check("h5screate_simple_f", error, total_error) ! ! Create and write datasets: ! ! Integer dataset ! CALL h5dcreate_f(file_id, dsetnamev, H5T_NATIVE_INTEGER, space_id, & dsetv_id, error) CALL check("h5dcreate_f", error, total_error) data_dims(1) = 2 data_dims(2) = 9 ! f_ptr = c_loc(data) ! CALL h5dwrite_f(dsetv_id, H5T_NATIVE_INTEGER, f_ptr, error) CALL h5dwrite_f(dsetv_id, H5T_NATIVE_INTEGER, DATA, data_dims, error) CALL check("h5dwrite_f", error, total_error) CALL h5dclose_f(dsetv_id, error) CALL check("h5dclose_f", error, total_error) ! ! Dataset with references ! CALL h5dcreate_f(file_id, dsetnamer, H5T_STD_REF_DSETREG, spacer_id, & dsetr_id, error) CALL check("h5dcreate_f", error, total_error) ! ! Create a reference to the hyperslab selection. ! start(1) = 0 start(2) = 3 COUNT(1) = 2 COUNT(2) = 3 CALL h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, & start, count, error) CALL check("h5sselect_hyperslab_f", error, total_error) ref(1)%ref(:) = 0 ! f_ptr = C_LOC(ref(1)) ! CALL h5rcreate_f(file_id, dsetnamev, 1, space_id, f_ptr, error) CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(1), error) CALL check("h5rcreate_f", error, total_error) ! ! Create a reference to elements selection. ! CALL h5sselect_none_f(space_id, error) CALL check("h5sselect_none_f", error, total_error) CALL h5sselect_elements_f(space_id, H5S_SELECT_SET_F, rank, num_points,& coord, error) CALL check("h5sselect_elements_f", error, total_error) ref(2)%ref(:) = 0 CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(2), error) CALL check("h5rcreate_f", error, total_error) ! ! Write dataset with the references. ! ref_dim(1) = SIZE(ref) CALL h5dwrite_f(dsetr_id, H5T_STD_REF_DSETREG, ref, ref_dim, error) CALL check("h5dwrite_f", error, total_error) ! ! Close all objects. ! CALL h5sclose_f(space_id, error) CALL check("h5sclose_f", error, total_error) CALL h5sclose_f(spacer_id, error) CALL check("h5sclose_f", error, total_error) CALL h5dclose_f(dsetr_id, error) CALL check("h5dclose_f", error, total_error) CALL h5fclose_f(file_id, error) CALL check("h5fclose_f", error, total_error) ! ! Reopen the file to test selections. ! CALL h5fopen_f (fix_filename, H5F_ACC_RDWR_F, file_id, error) CALL check("h5fopen_f", error, total_error) CALL h5dopen_f(file_id, dsetnamer, dsetr_id, error) CALL check("h5dopen_f", error, total_error) ! ! Read references to the dataset regions. ! ref_dim(1) = SIZE(ref_out) CALL h5dread_f(dsetr_id, H5T_STD_REF_DSETREG, ref_out, ref_dim, error) CALL check("h5dread_f", error, total_error) ! Get name of the dataset the first region reference points to using H5Rget_name_f CALL H5Rget_name_f(dsetr_id, ref_out(1), buf, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),7,total_error) CALL verify("H5Rget_name_f", buf, "/MATRIX", total_error) ! Get name of the dataset the first region reference points to using H5Rget_name_f ! buffer bigger then needed CALL H5Rget_name_f(dsetr_id, ref_out(1), buf_big, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),7,total_error) CALL verify("H5Rget_name_f", TRIM(buf_big), "/MATRIX", total_error) ! Get name of the dataset the first region reference points to using H5Rget_name_f ! buffer smaller then needed CALL H5Rget_name_f(dsetr_id, ref_out(1), buf_small, error, buf_size ) CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", INT(buf_size),7,total_error) CALL verify("H5Rget_name_f", TRIM(buf_small), "/MAT", total_error) ! ! Dereference the first reference. ! CALL H5rdereference_f(dsetr_id, ref_out(1), dsetv_id, error) CALL check("h5rdereference_f", error, total_error) CALL H5rget_region_f(dsetr_id, ref_out(1), space_id, error) CALL check("h5rget_region_f", error, total_error) ! Get name of the dataset the second region reference points to using H5Rget_name_f CALL H5Rget_name_f(dsetr_id, ref_out(2), buf, error) ! no optional size CALL check("H5Rget_name_f", error, total_error) CALL verify("H5Rget_name_f", TRIM(buf), "/MATRIX", total_error) ! ! Read selected data from the dataset. ! data_dims(1) = 2 data_dims(2) = 9 CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, & mem_space_id = space_id, file_space_id = space_id) CALL check("h5dread_f", error, total_error) CALL h5sclose_f(space_id, error) CALL check("h5sclose_f", error, total_error) CALL h5dclose_f(dsetv_id, error) CALL check("h5dclose_f", error, total_error) data_out = 0 ! ! Dereference the second reference. ! CALL H5rdereference_f(dsetr_id, ref_out(2), dsetv_id, error) CALL check("h5rdereference_f", error, total_error) CALL H5rget_region_f(dsetr_id, ref_out(2), space_id, error) CALL check("h5rget_region_f", error, total_error) ! ! Read selected data from the dataset. ! CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, & mem_space_id = space_id, file_space_id = space_id) CALL check("h5dread_f", error, total_error) ! ! Close all objects ! CALL h5sclose_f(space_id, error) CALL check("h5sclose_f", error, total_error) CALL h5dclose_f(dsetv_id, error) CALL check("h5dclose_f", error, total_error) CALL h5dclose_f(dsetr_id, error) CALL check("h5dclose_f", error, total_error) CALL h5fclose_f(file_id, error) CALL check("h5fclose_f", error, total_error) IF(cleanup) CALL h5_cleanup_f(filename, H5P_DEFAULT_F, error) CALL check("h5_cleanup_f", error, total_error) RETURN END SUBROUTINE refregtest END MODULE TH5R