! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! Copyright by The HDF Group. * ! All rights reserved. * ! * ! This file is part of HDF5. The full HDF5 copyright notice, including * ! terms governing use, modification, and redistribution, is contained in * ! the COPYING file, which can be found at the root of the source code * ! distribution tree, or in https://www.hdfgroup.org/licenses. * ! If you do not have access to either file, you may request a copy from * ! help@hdfgroup.org. * ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! ! writes/reads dataset by hyperslabs using multi-dataset routines, h5dread_multi and ! h5dwrite_multi ! SUBROUTINE pmultiple_dset_hyper_rw(do_collective, do_chunk, mpi_size, mpi_rank, nerrors) USE iso_c_binding USE TH5_MISC USE hdf5 USE mpi IMPLICIT NONE LOGICAL, INTENT(in) :: do_collective ! use collective IO LOGICAL, INTENT(in) :: do_chunk ! use chunking INTEGER, INTENT(in) :: mpi_size ! number of processes in the group of communicator INTEGER, INTENT(in) :: mpi_rank ! rank of the calling process in the communicator INTEGER, INTENT(inout) :: nerrors ! number of errors CHARACTER(LEN=80):: dsetname ! Dataset name INTEGER(hsize_t), DIMENSION(1:2) :: cdims ! chunk dimensions INTEGER(HID_T) :: file_id ! File identifier INTEGER(HID_T) :: filespace ! Dataspace identifier in file INTEGER(HID_T) :: memspace ! Dataspace identifier in memory INTEGER(HID_T) :: plist_id ! Property list identifier INTEGER(HID_T) :: dcpl_id ! Dataset creation property list INTEGER(HSIZE_T), DIMENSION(1:2) :: dimsf ! Dataset dimensions. INTEGER(HSIZE_T), DIMENSION(1:2) :: count INTEGER(HSSIZE_T), DIMENSION(1:2) :: offset INTEGER, ALLOCATABLE, DIMENSION(:,:,:), TARGET :: DATA ! Data to write INTEGER, ALLOCATABLE, DIMENSION(:,:,:), TARGET :: rDATA ! Data to write INTEGER, PARAMETER :: rank = 2 ! Dataset rank INTEGER :: i INTEGER(HSIZE_T) :: ii, jj, kk, istart INTEGER :: error ! Error flags INTEGER(SIZE_T), PARAMETER :: ndsets = 5 INTEGER(HID_T), DIMENSION(1:ndsets) :: dset_id INTEGER(HID_T), DIMENSION(1:ndsets) :: mem_type_id INTEGER(HID_T), DIMENSION(1:ndsets) :: mem_space_id INTEGER(HID_T), DIMENSION(1:ndsets) :: file_space_id TYPE(C_PTR), DIMENSION(1:ndsets) :: buf_md INTEGER(SIZE_T) :: obj_count INTEGER :: data_xfer_mode dimsf(1) = 5_hsize_t dimsf(2) = INT(mpi_size, hsize_t)*8_hsize_t ! ! Setup file access property list with parallel I/O access. ! CALL h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, error) CALL check("h5pcreate_f", error, nerrors) CALL h5pset_fapl_mpio_f(plist_id, MPI_COMM_WORLD, MPI_INFO_NULL, error) CALL check("h5pset_fapl_mpio_f", error, nerrors) ! ! Create the file collectively. ! CALL h5fcreate_f("parf2.h5", H5F_ACC_TRUNC_F, file_id, error, access_prp = plist_id) CALL check("h5fcreate_f", error, nerrors) CALL h5pclose_f(plist_id, error) CALL check("h5pclose_f", error, nerrors) ! ! Create the data space for the dataset. ! CALL h5screate_simple_f(rank, dimsf, filespace, error) CALL check("h5screate_simple_f", error, nerrors) ! ! Each process defines dataset in memory and writes it to the hyperslab ! in the file. ! count(1) = dimsf(1) count(2) = dimsf(2)/mpi_size offset(1) = 0 offset(2) = mpi_rank * count(2) CALL h5screate_simple_f(rank, count, memspace, error) CALL check("h5screate_simple_f", error, nerrors) ! ! Modify dataset creation properties to enable chunking ! CALL h5pcreate_f(H5P_DATASET_CREATE_F, dcpl_id, error) CALL check("h5pcreate_f", error, nerrors) IF (do_chunk) THEN cdims(1) = dimsf(1) cdims(2) = dimsf(2)/mpi_size/2 CALL h5pset_chunk_f(dcpl_id, 2, cdims, error) CALL check("h5pset_chunk_f", error, nerrors) ENDIF ! ! Select hyperslab in the file. ! CALL h5sselect_hyperslab_f(filespace, H5S_SELECT_SET_F, offset, count, error) CALL check("h5sselect_hyperslab_f", error, nerrors) ! ! Initialize data buffer ! ALLOCATE ( DATA(COUNT(1),COUNT(2), ndsets)) ALLOCATE ( rdata(COUNT(1),COUNT(2), ndsets)) ! Create property list for collective dataset write ! CALL h5pcreate_f(H5P_DATASET_XFER_F, plist_id, error) CALL check("h5pcreate_f", error, nerrors) IF(do_collective)THEN CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, error) CALL check("h5pset_dxpl_mpio_f", error, nerrors) ELSE CALL h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_INDEPENDENT_F, error) CALL check("h5pset_dxpl_mpio_f", error, nerrors) ENDIF ! ! Create the dataset with default properties. ! mem_type_id(1:ndsets) = H5T_NATIVE_INTEGER mem_space_id(1:ndsets) = memspace file_space_id(1:ndsets)= filespace DO ii = 1, ndsets ! Create the data DO kk = 1, COUNT(1) DO jj = 1, COUNT(2) istart = (kk-1)*dimsf(2) + mpi_rank*COUNT(2) DATA(kk,jj,ii) = INT((istart + jj)*10**(ii-1)) ENDDO ENDDO ! Point to te data buf_md(ii) = C_LOC(DATA(1,1,ii)) ! direct the output of the write statement to unit "dsetname" WRITE(dsetname,'("dataset ",I0)') ii ! create the dataset CALL h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, filespace, dset_id(ii), error, dcpl_id) CALL check("h5dcreate_f", error, nerrors) ENDDO ! ! Write the dataset collectively. ! CALL h5dwrite_multi_f(ndsets, dset_id, mem_type_id, mem_space_id, file_space_id, buf_md, error, plist_id) CALL check("h5dwrite_multi_f", error, nerrors) CALL h5pget_dxpl_mpio_f(plist_id, data_xfer_mode, error) CALL check("h5pget_dxpl_mpio_f", error, nerrors) IF(do_collective)THEN IF(data_xfer_mode.NE.H5FD_MPIO_COLLECTIVE_F)THEN nerrors = nerrors + 1 ENDIF ENDIF DO i = 1, ndsets ! Point to the read buffer buf_md(i) = C_LOC(rdata(1,1,i)) ENDDO CALL H5Dread_multi_f(ndsets, dset_id, mem_type_id, mem_space_id, file_space_id, buf_md, error, plist_id) CALL check("h5dread_multi_f", error, nerrors) CALL h5pget_dxpl_mpio_f(plist_id, data_xfer_mode, error) CALL check("h5pget_dxpl_mpio_f", error, nerrors) IF(do_collective)THEN IF(data_xfer_mode.NE.H5FD_MPIO_COLLECTIVE_F)THEN nerrors = nerrors + 1 ENDIF ENDIF DO i = 1, ndsets ! Close all the datasets CALL h5dclose_f(dset_id(i), error) CALL check("h5dclose_f", error, nerrors) ENDDO ! check the data read and write buffers DO ii = 1, ndsets ! Create the data DO kk = 1, COUNT(1) DO jj = 1, COUNT(2) IF(rDATA(kk,jj,ii).NE.DATA(kk,jj,ii))THEN nerrors = nerrors + 1 ENDIF ENDDO ENDDO ENDDO ! ! Deallocate data buffer. ! DEALLOCATE(data, rdata) ! ! Close dataspaces. ! CALL h5sclose_f(filespace, error) CALL check("h5sclose_f", error, nerrors) CALL h5sclose_f(memspace, error) CALL check("h5sclose_f", error, nerrors) ! ! Close the dataset and property list. ! CALL h5pclose_f(dcpl_id, error) CALL check("h5pclose_f", error, nerrors) CALL h5pclose_f(plist_id, error) CALL check("h5pclose_f", error, nerrors) CALL h5fget_obj_count_f(file_id, H5F_OBJ_ALL_F, obj_count, error) IF(obj_count.NE.1)THEN nerrors = nerrors + 1 END IF ! ! Close the file. ! CALL h5fclose_f(file_id, error) CALL check("h5fclose_f", error, nerrors) END SUBROUTINE pmultiple_dset_hyper_rw