! ! This test writes/reads dataset by hyperslabs collectively. SUBROUTINE dataset_wr_by_hyperslabs(total_error) USE THDF5 IMPLICIT NONE CHARACTER(LEN=7), PARAMETER :: filename = "sdsf.h5" ! File name CHARACTER(LEN=8), PARAMETER :: dsetname = "IntArray" ! Dataset name INTEGER(HID_T) :: file_id ! File identifier INTEGER(HID_T) :: dset_id ! Dataset identifier INTEGER(HID_T) :: filespace ! Dataspace identifier in file INTEGER(HID_T) :: memspace ! Dataspace identifier in memory INTEGER(HID_T) :: plac_id ! Property list identifier INTEGER(HID_T) :: plxfer_id ! Property list identifier INTEGER(HSIZE_T), DIMENSION(2) :: dimsf = (/DIM1,DIM2/) ! Dataset dimensions. INTEGER(HSIZE_T), DIMENSION(2) :: count INTEGER(HSIZE_T), DIMENSION(2) :: offset INTEGER, ALLOCATABLE :: data (:,:) ! Data to write INTEGER, ALLOCATABLE :: data_out (:,:) ! Buffer to store data INTEGER :: rank = 2 ! Dataset rank INTEGER :: i, j INTEGER :: total_error, error ! Error flags ! ! MPI definitions and calls. ! INTEGER :: mpierror ! MPI error flag INTEGER :: comm, info INTEGER :: mpi_size, mpi_rank comm = MPI_COMM_WORLD info = MPI_INFO_NULL CALL MPI_COMM_SIZE(comm, mpi_size, mpierror) CALL MPI_COMM_RANK(comm, mpi_rank, mpierror) ! ! Setup file access property list with parallel I/O access. ! CALL h5pcreate_f(H5P_FILE_ACCESS_F, plac_id, error) CALL check("h5pcreate_f", error, total_error) CALL h5pset_fapl_mpio_f(plac_id, comm, info, error) CALL check("h5pset_fapl_mpio_f", error, total_error) ! ! Create the file collectively. ! CALL h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, error, access_prp = plac_id) CALL check("h5fcreate_f", error, total_error) CALL h5pclose_f(plac_id, error) CALL check("h5pclose_f", error, total_error) ! ! Create the data space for the dataset. ! CALL h5screate_simple_f(rank, dimsf, filespace, error) CALL check("h5screate_simple_f", error, total_error) ! ! Create the dataset with default properties. ! CALL h5dcreate_f(file_id, dsetname, H5T_NATIVE_INTEGER, filespace, & dset_id, error) CALL check("h5dcreate_f", error, total_error) CALL h5sclose_f(filespace, error) CALL check("h5sclose_f", error, total_error) ! ! Each process defines dataset in memory and writes it to the hyperslab ! in the file. ! count(1) = dimsf(1) count(2) = dimsf(2)/mpi_size offset(1) = 0 offset(2) = mpi_rank * count(2) CALL h5screate_simple_f(rank, count, memspace, error) CALL check("h5screate_simple_f", error, total_error) ! ! Select hyperslab in the file. ! CALL h5dget_space_f(dset_id, filespace, error) CALL check("h5dget_space_f", error, total_error) CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error) CALL check("h5sselect_hyperslab_f", error, total_error) ! ! Initialize data buffer with trivial data. ! ALLOCATE ( data(count(1),count(2))) data = mpi_rank + 10 ! ! Create property list for collective dataset write ! CALL h5pcreate_f(H5P_DATASET_XFER_F, plxfer_id, error) CALL check("h5pcreate_f", error, total_error) CALL h5pset_dxpl_mpio_f(plxfer_id, H5FD_MPIO_COLLECTIVE_F, error) CALL check("h5pset_dxpl_mpio_f", error, total_error) ! ! Write the dataset collectively. ! CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, data, error, & file_space_id = filespace, mem_space_id = memspace, xfer_prp = plxfer_id) CALL check("h5dwrite_f", error, total_error) ! ! Deallocate data buffer. ! DEALLOCATE(data) ! ! Close dataspaces. ! CALL h5sclose_f(filespace, error) CALL check("h5sclose_f", error, total_error) CALL h5sclose_f(memspace, error) CALL check("h5sclose_f", error, total_error) ! ! Close the dataset. ! CALL h5dclose_f(dset_id, error) CALL check("h5dclose_f", error, total_error) CALL h5pclose_f(plxfer_id, error) CALL check("h5pclose_f", error, total_error) ! ! Close the file. ! CALL h5fclose_f(file_id, error) CALL check("h5fclose_f", error, total_error) ! ! Reopen the file with || access. ! CALL h5pcreate_f(H5P_FILE_ACCESS_F, plac_id, error) CALL check("h5pcreate_f", error, total_error) CALL h5pset_fapl_mpio_f(plac_id, comm, info, error) CALL check("h5pset_fapl_mpio_f", error, total_error) CALL h5fopen_f(filename, H5F_ACC_RDWR_F, file_id, error, plac_id) CALL check("h5fopen_f", error, total_error) CALL h5pclose_f(plac_id, error) CALL check("h5pclose_f", error, total_error) ! ! Open dataset. ! CALL h5dopen_f(file_id, dsetname, dset_id, error) CALL check("h5dopen_f", error, total_error) ! ! Each process defines dataset in memory and reads hyperslab ! from the file. ! count(1) = dimsf(1) count(2) = dimsf(2)/mpi_size offset(1) = 0 offset(2) = mpi_rank * count(2) CALL h5screate_simple_f(rank, count, memspace, error) CALL check("h5screate_simple_f", error, total_error) ! ! Select hyperslab in the file. ! CALL h5dget_space_f(dset_id, filespace, error) CALL check("h5dget_space_f", error, total_error) CALL h5sselect_hyperslab_f (filespace, H5S_SELECT_SET_F, offset, count, error) CALL check("h5sselect_hyperslab_f", error, total_error) ! ! Allocate data buffer. ! ALLOCATE ( data(count(1),count(2))) ALLOCATE ( data_out(count(1),count(2))) data = mpi_rank + 10 ! ! Create property list for collective dataset write ! CALL h5pcreate_f(H5P_DATASET_XFER_F, plxfer_id, error) CALL check("h5pcreate_f", error, total_error) CALL h5pset_dxpl_mpio_f(plxfer_id, H5FD_MPIO_COLLECTIVE_F, error) CALL check("h5pset_dxpl_mpio_f", error, total_error) ! ! Write the dataset collectively. ! CALL h5dread_f(dset_id, H5T_NATIVE_INTEGER, data_out, error, & file_space_id = filespace, mem_space_id = memspace, xfer_prp = plxfer_id) CALL check("h5dread_f", error, total_error) do j = 1, count(2) do i = 1, count(1) if( data(i,j) .ne. data_out(i,j)) then total_error = total_error + 1 goto 100 endif enddo enddo 100 continue ! ! Deallocate data buffer. ! DEALLOCATE(data) DEALLOCATE(data_out) ! ! Close dataspaces. ! CALL h5sclose_f(filespace, error) CALL check("h5sclose_f", error, total_error) CALL h5sclose_f(memspace, error) CALL check("h5sclose_f", error, total_error) ! ! Close property list. ! CALL h5pclose_f(plxfer_id, error) CALL check("h5pclose_f", error, total_error) ! ! Close dataset. ! CALL h5dclose_f(dset_id, error) CALL check("h5dclose_f", error, total_error) ! ! Close the file. ! CALL h5fclose_f(file_id, error) CALL check("h5fclose_f", error, total_error) END SUBROUTINE dataset_wr_by_hyperslabs