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HDF5
1.15.0.bf68e6e
API Reference
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Use group creation properties to control aspects of group creation such as storage layout, compression, and link creation order tracking. Unlike file access properties, creation properties are stored with the group, and cannot be changed once a group has been created.
Function | Purpose |
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H5Pall_filters_avail | Verifies that all required filters are available. |
H5Pget_filter | Returns information about a filter in a pipeline. The C function is a macro:
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H5Pget_filter_by_id | Returns information about the specified filter. The C function is a macro:
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H5Pget_nfilters | Returns the number of filters in the pipeline. |
H5Pmodify_filter | Modifies a filter in the filter pipeline. |
H5Premove_filter | Deletes one or more filters in the filter pipeline. |
H5Pset_deflate | Sets the deflate (GNU gzip) compression method and compression level. |
H5Pset_filter | Adds a filter to the filter pipeline. |
H5Pset_fletcher32 | Sets up use of the Fletcher32 checksum filter. |
H5Pset_local_heap_size_hint/H5Pget_local_heap_size_hint | Sets/gets the anticipated maximum size of a local heap. |
H5Pset_link_phase_change | Sets the parameters for conversion between compact and dense groups. |
H5Pget_link_phase_change | Queries the settings for conversion between compact and dense groups. |
H5Pset_est_link_info | Sets estimated number of links and length of link names in a group. |
H5Pget_est_link_info | Queries data required to estimate required local heap or object header size. |
H5Pset_nlinks | Sets maximum number of soft or user-defined link traversals. |
H5Pget_nlinks | Retrieves the maximum number of link traversals. |
H5Pset_link_creation_order | Sets creation order tracking and indexing for links in a group. |
H5Pget_link_creation_order | Queries whether link creation order is tracked and/or indexed in a group. |
H5Pset_char_encoding | Sets the character encoding used to encode a string. Use to set ASCII or UTF-8 character encoding for object names. |
H5Pget_char_encoding | Retrieves the character encoding used to create a string. |
Modules | |
File Creation Properties | |
Functions | |
herr_t | H5Pget_est_link_info (hid_t plist_id, unsigned *est_num_entries, unsigned *est_name_len) |
Returns the estimated link count and average link name length in a group. More... | |
herr_t | H5Pget_link_creation_order (hid_t plist_id, unsigned *crt_order_flags) |
Queries whether link creation order is tracked and/or indexed in a group. More... | |
herr_t | H5Pget_link_phase_change (hid_t plist_id, unsigned *max_compact, unsigned *min_dense) |
Queries the settings for conversion between compact and dense groups. More... | |
herr_t | H5Pget_local_heap_size_hint (hid_t plist_id, size_t *size_hint) |
Retrieves the anticipated size of the local heap for original-style groups. More... | |
herr_t | H5Pset_est_link_info (hid_t plist_id, unsigned est_num_entries, unsigned est_name_len) |
Sets estimated number of links and length of link names in a group. More... | |
herr_t | H5Pset_link_creation_order (hid_t plist_id, unsigned crt_order_flags) |
Sets creation order tracking and indexing for links in a group. More... | |
herr_t | H5Pset_link_phase_change (hid_t plist_id, unsigned max_compact, unsigned min_dense) |
Sets the parameters for conversion between compact and dense groups. More... | |
herr_t | H5Pset_local_heap_size_hint (hid_t plist_id, size_t size_hint) |
Specifies the anticipated maximum size of a local heap. More... | |
Returns the estimated link count and average link name length in a group.
[in] | plist_id | Group creation property list identifier |
[out] | est_num_entries | The estimated number of links in the group referenced by plist_id |
[out] | est_name_len | The estimated average length of line names in the group referenced by plist_id |
H5Pget_est_link_info() retrieves two settings from the group creation property list plist_id:
the estimated number of links that are expected to be inserted into a group created with the property list and the estimated average length of those link names.
The estimated number of links is returned in est_num_entries
. The limit for est_num_entries
is 64 K.
The estimated average length of the anticipated link names is returned in est_name_len
. The limit for est_name_len
is 64 K.
See Group implementations in HDF5 for a discussion of the available types of HDF5 group structures.
Queries whether link creation order is tracked and/or indexed in a group.
[in] | plist_id | Group or file creation property list identifier |
[out] | crt_order_flags | Creation order flag(s) |
H5Pget_link_creation_order() queries the group or file creation property list, plist_id
, and returns a flag indicating whether link creation order is tracked and/or indexed in a group.
See H5Pset_link_creation_order() for a list of valid creation order flags, as passed in crt_order_flags
, and their meanings.
Queries the settings for conversion between compact and dense groups.
[in] | plist_id | Group creation property list identifier |
[out] | max_compact | Maximum number of links for compact storage |
[out] | min_dense | Minimum number of links for dense storage |
H5Pget_link_phase_change() queries the maximum number of entries for a compact group and the minimum number of links to require before converting a group to a dense form.
In the compact format, links are stored as messages in the group's header. In the dense format, links are stored in a fractal heap and indexed with a version 2 B-tree.
max_compact
is the maximum number of links to store as header messages in the group header before converting the group to the dense format. Groups that are in the compact format and exceed this number of links are automatically converted to the dense format.
min_dense
is the minimum number of links to store in the dense format. Groups which are in dense format and in which the number of links falls below this number are automatically converted back to the compact format.
In the compact format, links are stored as messages in the group's header. In the dense format, links are stored in a fractal heap and indexed with a version 2 B-tree.
See H5Pset_link_phase_change() for a discussion of traditional, compact, and dense group storage.
Retrieves the anticipated size of the local heap for original-style groups.
[in] | plist_id | Group creation property list identifier |
[out] | size_hint | Anticipated size of local heap |
H5Pget_local_heap_size_hint() queries the group creation property list, plist_id
, for the anticipated size of the local heap, size_hint
, for original-style groups, i.e., for groups of the style used prior to HDF5 Release 1.8.0. See H5Pset_local_heap_size_hint() for further discussion.
Sets estimated number of links and length of link names in a group.
[in] | plist_id | Group creation property list identifier |
[in] | est_num_entries | Estimated number of links to be inserted into group |
[in] | est_name_len | Estimated average length of link names |
H5Pset_est_link_info() inserts two settings into the group creation property list plist_id: the estimated number of links that are expected to be inserted into a group created with the property list and the estimated average length of those link names.
The estimated number of links is passed in est_num_entries
. The limit for est_num_entries
is 64 K.
The estimated average length of the anticipated link names is passed in est_name_len
. The limit for est_name_len
is 64 K.
The values for these two settings are multiplied to compute the initial local heap size (for old-style groups, if the local heap size hint is not set) or the initial object header size for (new-style compact groups; see Group implementations in HDF5). Accurately setting these parameters will help reduce wasted file space.
If a group is expected to have many links and to be stored in dense format, set est_num_entries
to 0 (zero) for maximum efficiency. This will prevent the group from being created in the compact format.
See Group implementations in HDF5 for a discussion of the available types of HDF5 group structures.
Sets creation order tracking and indexing for links in a group.
[in] | plist_id | Group or file creation property list identifier |
[out] | crt_order_flags | Creation order flag(s) |
H5Pset_link_creation_order() sets flags for tracking and indexing links on creation order in groups created with the group (or file) creation property list plist_id
.
crt_order_flags
contains flags with the following meanings:
H5P_CRT_ORDER_TRACKED | Link creation order is tracked but not necessarily indexed |
H5P_CRT_ORDER_INDEXED | Link creation order is indexed (requires H5P_CRT_ORDER_TRACKED) |
The default behavior is that links are tracked and indexed by name, and link creation order is neither tracked nor indexed. The name is always the primary index for links in a group.
H5Pset_link_creation_order() can be used to set link creation order tracking, or to set link creation order tracking and indexing.
If (H5P_CRT_ORDER_TRACKED | H5P_CRT_ORDER_INDEXED) is specified for crt_order_flags
, then links will be tracked and indexed by creation order. The creation order is added as a secondary index and enables faster queries and iterations by creation order.
If just H5P_CRT_ORDER_TRACKED is specified for crt_order_flags
, then links will be tracked by creation order, but not indexed by creation order. Queries and iterations by creation order will work but will be much slower for large groups than if H5P_CRT_ORDER_INDEXED had been included.
Sets the parameters for conversion between compact and dense groups.
[in] | plist_id | Group creation property list identifier |
[in] | max_compact | Maximum number of links for compact storage (Default: 8) |
[in] | min_dense | Minimum number of links for dense storage (Default: 6) |
H5Pset_link_phase_change() sets the maximum number of entries for a compact group and the minimum number of links to allow before converting a dense group back to the compact format.
max_compact
is the maximum number of links to store as header messages in the group header before converting the group to the dense format. Groups that are in compact format and which exceed this number of links are automatically converted to dense format.
min_dense
is the minimum number of links to store in the dense format. Groups which are in dense format and in which the number of links falls below this threshold are automatically converted to compact format.
Specifies the anticipated maximum size of a local heap.
[in] | plist_id | Group creation property list identifier |
[in] | size_hint | Anticipated maximum size in bytes of local heap |
H5Pset_local_heap_size_hint() is used with original-style HDF5 groups (see “Motivation” below) to specify the anticipated maximum local heap size, size_hint, for groups created with the group creation property list plist_id
. The HDF5 library then uses size_hint
to allocate contiguous local heap space in the file for each group created with plist_id
.
For groups with many members or very few members, an appropriate initial value of size_hint
would be the anticipated number of group members times the average length of group member names, plus a small margin:
If it is known that there will be groups with zero members, the use of a group creation property list with size_hint
set to to 1 (one) will guarantee the smallest possible local heap for each of those groups.
Setting size_hint
to zero (0) causes the library to make a reasonable estimate for the default local heap size.
size_hint
, is a performance tuning parameter for original-style groups. As indicated above, an HDF5 group may have zero, a handful, or tens of thousands of members. Since the original style of HDF5 groups stores the metadata for all of these group members in a uniform format in a local heap, the size of that metadata (and hence, the size of the local heap) can vary wildly from group to group. To intelligently allocate space and to avoid unnecessary fragmentation of the local heap, it can be valuable to provide the library with a hint as to the local heap's likely eventual size. This can be particularly valuable when it is known that a group will eventually have a great many members. It can also be useful in conserving space in a file when it is known that certain groups will never have any members.