/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #ifndef H5TBpublic_H #define H5TBpublic_H #ifdef __cplusplus extern "C" { #endif /** \page H5TB_UG The HDF5 High Level Table * @todo Under Construction */ /**\defgroup H5TB HDF5 Table APIs (H5TB) * * Creating and manipulating HDF5 datasets intended to be * interpreted as tables (H5TB) * * The HDF5 Table API defines a standard storage for HDF5 datasets * that are intended to be interpreted as tables. A table is defined * as a collection of records whose values are stored in fixed-length * fields. All records have the same structure, and all values in * each field have the same data type. * * \note \Bold{Programming hints:} * \note To use any of these functions or subroutines, * you must first include the relevant include file (C) or * module (Fortran) in your application. * \note The following line includes the HDF5 Table package, H5TB, * in C applications: * \code #include "hdf5_hl.h" \endcode * \note To include the H5TB module in Fortran applications specify: * \code use h5tb \endcode * Fortran applications must also include \ref H5open before * any HDF5 calls to initialize global variables and \ref H5close * after all HDF5 calls to close the Fortran interface. * * * *
* * - Creation * - \ref H5TBmake_table * - Storage * - \ref H5TBappend_records (No Fortran) * - \ref H5TBwrite_records (No Fortran) * - \ref H5TBwrite_fields_name * - \ref H5TBwrite_fields_index * * - Modification * - \ref H5TBdelete_record (No Fortran) * - \ref H5TBinsert_record (No Fortran) * - \ref H5TBadd_records_from (No Fortran) * - \ref H5TBcombine_tables (No Fortran) * - \ref H5TBinsert_field * - \ref H5TBdelete_field * * * * - Retrieval * - \ref H5TBread_table * - \ref H5TBread_records (No Fortran) * - \ref H5TBread_fields_name * - \ref H5TBread_fields_index * * - Query * - \ref H5TBget_table_info * - \ref H5TBget_field_info * * - Query Table Attributes * - \ref H5TBAget_fill * - \ref H5TBAget_title * *
* */ /*------------------------------------------------------------------------- * * Create functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Creates and writes a table * * \param[in] table_title The title of the table * \fg_loc_id * \param[in] dset_name The name of the dataset to create * \param[in] nfields The number of fields * \param[in] nrecords The number of records * \param[in] type_size The size in bytes of the structure * associated with the table; * This value is obtained with \c sizeof(). * \param[in] field_names An array containing the names of * the fields * \param[in] field_offset An array containing the offsets of * the fields * \param[in] field_types An array containing the type of * the fields * \param[in] chunk_size The chunk size * \param[in] fill_data Fill values data * \param[in] compress Flag that turns compression on or off * \param[in] buf Buffer with data to be written to the table * * \return \herr_t * * \details H5TBmake_table() creates and writes a dataset named * \p dset_name attached to the object specified by the * identifier loc_id. * */ H5_HLDLL herr_t H5TBmake_table(const char *table_title, hid_t loc_id, const char *dset_name, hsize_t nfields, hsize_t nrecords, size_t type_size, const char *field_names[], const size_t *field_offset, const hid_t *field_types, hsize_t chunk_size, void *fill_data, int compress, const void *buf); /*------------------------------------------------------------------------- * * Write functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Adds records to the end of the table * * \fg_loc_id * \param[in] dset_name The name of the dataset to overwrite * \param[in] nrecords The number of records to append * \param[in] type_size The size of the structure type, * as calculated by \c sizeof(). * \param[in] field_offset An array containing the offsets of * the fields. These offsets can be * calculated with the #HOFFSET macro * \param[in] dst_sizes An array containing the sizes of * the fields * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBappend_records() adds records to the end of the table * named \p dset_name attached to the object specified by the * identifier \p loc_id. The dataset is extended to hold the * new records. * */ H5_HLDLL herr_t H5TBappend_records(hid_t loc_id, const char *dset_name, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, const void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Overwrites records * * \fg_loc_id * \param[in] dset_name The name of the dataset to overwrite * \param[in] start The zero index record to start writing * \param[in] nrecords The number of records to write * \param[in] type_size The size of the structure type, as * calculated by \c sizeof(). * \param[in] field_offset An array containing the offsets of * the fields. These offsets can be * calculated with the #HOFFSET macro * \param[in] dst_sizes An array containing the sizes of * the fields * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBwrite_records() overwrites records starting at the zero * index position start of the table named \p dset_name attached * to the object specified by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBwrite_records(hid_t loc_id, const char *dset_name, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, const void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Overwrites fields * * \fg_loc_id * \param[in] dset_name The name of the dataset to overwrite * \param[in] field_names The names of the fields to write * \param[in] start The zero index record to start writing * \param[in] nrecords The number of records to write * \param[in] type_size The size of the structure type, as * calculated by \c sizeof(). * \param[in] field_offset An array containing the offsets of * the fields. These offsets can be * calculated with the #HOFFSET macro * \param[in] dst_sizes An array containing the sizes of * the fields * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBwrite_fields_name() overwrites one or several fields * specified by \p field_names with data in \p buf from a * dataset named \p dset_name attached to the object specified * by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBwrite_fields_name(hid_t loc_id, const char *dset_name, const char *field_names, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, const void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Overwrites fields * * \fg_loc_id * \param[in] dset_name The name of the dataset to overwrite * \param[in] nfields The number of fields to overwrite. * This parameter is also the size of the * \p field_index array. * \param[in] field_index The indexes of the fields to write * \param[in] start The zero based index record to start writing * \param[in] nrecords The number of records to write * \param[in] type_size The size of the structure type, as * calculated by \c sizeof(). * \param[in] field_offset An array containing the offsets of * the fields. These offsets can be * calculated with the #HOFFSET macro * \param[in] dst_sizes An array containing the sizes of * the fields * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBwrite_fields_index() overwrites one or several fields * specified by \p field_index with a buffer \p buf from a * dataset named \p dset_name attached to the object * specified by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBwrite_fields_index(hid_t loc_id, const char *dset_name, hsize_t nfields, const int *field_index, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, const void *buf); /*------------------------------------------------------------------------- * * Read functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Reads a table * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[in] dst_size The size of the structure type, * as calculated by \c sizeof() * \param[in] dst_offset An array containing the offsets of * the fields. These offsets can be * calculated with the #HOFFSET macro * \param[in] dst_sizes An array containing the sizes of * the fields. These sizes can be * calculated with the sizeof() macro. * \param[in] dst_buf Buffer with data * * \return \herr_t * * \details H5TBread_table() reads a table named * \p dset_name attached to the object specified by * the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBread_table(hid_t loc_id, const char *dset_name, size_t dst_size, const size_t *dst_offset, const size_t *dst_sizes, void *dst_buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * \brief Reads one or several fields. The fields are identified by name. * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[in] field_names An array containing the names of the * fields to read * \param[in] start The start record to read from * \param[in] nrecords The number of records to read * \param[in] type_size The size in bytes of the structure associated * with the table * (This value is obtained with \c sizeof().) * \param[in] field_offset An array containing the offsets of the fields * \param[in] dst_sizes An array containing the size in bytes of * the fields * \param[out] buf Buffer with data * * \return \herr_t * * \details H5TBread_fields_name() reads the fields identified * by \p field_names from a dataset named \p dset_name * attached to the object specified by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBread_fields_name(hid_t loc_id, const char *dset_name, const char *field_names, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Reads one or several fields. The fields are identified by index. * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[in] nfields The number of fields to read * (This parameter is also the size of the * \p field_index array.) * fields to read * \param[in] field_index The indexes of the fields to read * \param[in] start The start record to read from * \param[in] nrecords The number of records to read * \param[in] type_size The size in bytes of the structure associated * with the table * (This value is obtained with \c sizeof()) * \param[in] field_offset An array containing the offsets of the fields * \param[in] dst_sizes An array containing the size in bytes of * the fields * \param[out] buf Buffer with data * * \return \herr_t * * \details H5TBread_fields_index() reads the fields identified * by \p field_index from a dataset named \p dset_name attached * to the object specified by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBread_fields_index(hid_t loc_id, const char *dset_name, hsize_t nfields, const int *field_index, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *field_offset, const size_t *dst_sizes, void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Reads records * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[in] start The start record to read from * \param[in] nrecords The number of records to read * \param[in] type_size The size of the structure type, * as calculated by \c sizeof() * \param[in] dst_offset An array containing the offsets of the * fields. These offsets can be calculated * with the #HOFFSET macro * \param[in] dst_sizes An array containing the size in bytes of * the fields * \param[out] buf Buffer with data * * \return \herr_t * * \details H5TBread_records() reads some records identified from a dataset * named \p dset_name attached to the object specified by the * identifier \p loc_id. * */ H5_HLDLL herr_t H5TBread_records(hid_t loc_id, const char *dset_name, hsize_t start, hsize_t nrecords, size_t type_size, const size_t *dst_offset, const size_t *dst_sizes, void *buf); /*------------------------------------------------------------------------- * * Inquiry functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Gets the table dimensions * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[out] nfields The number of fields * \param[out] nrecords The number of records * * \return \herr_t * * \details H5TBget_table_info() retrieves the table dimensions from a * dataset named \p dset_name attached to the object specified * by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBget_table_info(hid_t loc_id, const char *dset_name, hsize_t *nfields, hsize_t *nrecords); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Gets information about a table * * \fg_loc_id * \param[in] dset_name The name of the dataset to read * \param[out] field_names An array containing the names of the fields * \param[out] field_sizes An array containing the size of the fields * \param[out] field_offsets An array containing the offsets of the fields * \param[out] type_size The size of the HDF5 datatype associated * with the table. (More specifically, * the size in bytes of the HDF5 compound * datatype used to define a row, or record, * in the table) * * \return \herr_t * * \details H5TBget_field_info() gets information about a dataset * named \p dset_name attached to the object specified * by the identifier \p loc_id. * */ H5_HLDLL herr_t H5TBget_field_info(hid_t loc_id, const char *dset_name, char *field_names[], size_t *field_sizes, size_t *field_offsets, size_t *type_size); /*------------------------------------------------------------------------- * * Manipulation functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Delete records * * \fg_loc_id * \param[in] dset_name The name of the dataset * \param[in] start The start record to delete from * \param[in] nrecords The number of records to delete * * \return \herr_t * * \details H5TBdelete_record() deletes nrecords number of records starting * from \p start from the middle of the table \p dset_name * ("pulling up" all the records after it). * */ H5_HLDLL herr_t H5TBdelete_record(hid_t loc_id, const char *dset_name, hsize_t start, hsize_t nrecords); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Insert records * * \fg_loc_id * \param[in] dset_name The name of the dataset * \param[in] start The position to insert * \param[in] nrecords The number of records to insert * \param[in] dst_size The size in bytes of the structure * associated with the table * \param[in] dst_offset An array containing the offsets of the * fields * \param[in] dst_sizes An array containing the size in bytes of * the fields * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBinsert_record() inserts records into the middle of the table * ("pushing down" all the records after it) * */ H5_HLDLL herr_t H5TBinsert_record(hid_t loc_id, const char *dset_name, hsize_t start, hsize_t nrecords, size_t dst_size, const size_t *dst_offset, const size_t *dst_sizes, void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Add records from first table to second table * * \fg_loc_id * \param[in] dset_name1 The name of the dataset to read the records * \param[in] start1 The position to read the records from the * first table * \param[in] nrecords The number of records to read from the first * table * \param[in] dset_name2 The name of the dataset to write the records * \param[in] start2 The position to write the records on the * second table * * \return \herr_t * * \details H5TBadd_records_from() adds records from a dataset named * \p dset_name1 to a dataset named \p dset_name2. Both tables * are attached to the object specified by the identifier loc_id. * */ H5_HLDLL herr_t H5TBadd_records_from(hid_t loc_id, const char *dset_name1, hsize_t start1, hsize_t nrecords, const char *dset_name2, hsize_t start2); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Combines records from two tables into a third * * \param[in] loc_id1 Identifier of the file or group in which * the first table is located * \param[in] dset_name1 The name of the first table to combine * \param[in] loc_id2 Identifier of the file or group in which * the second table is located * \param[in] dset_name2 The name of the second table to combine * \param[in] dset_name3 The name of the new table * * \return \herr_t * * \details H5TBcombine_tables() combines records from two datasets named * \p dset_name1 and \p dset_name2, to a new table named * \p dset_name3. These tables can be located on different files, * identified by \p loc_id1 and \p loc_id2 (identifiers obtained * with H5Fcreate()). They can also be located on the same file. * In this case one uses the same identifier for both parameters * \p loc_id1 and \p loc_id2. If two files are used, the third * table is written in the first file. * */ H5_HLDLL herr_t H5TBcombine_tables(hid_t loc_id1, const char *dset_name1, hid_t loc_id2, const char *dset_name2, const char *dset_name3); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Insert a new field into a table * * \fg_loc_id * \param[in] dset_name The name of the table * \param[in] field_name The name of the field to insert * \param[in] field_type The data type of the field * \param[in] position The zero based index position where to * insert the field * \param[in] fill_data Fill value data for the field. This parameter * can be NULL * \param[in] buf Buffer with data * * \return \herr_t * * \details H5TBinsert_field() inserts a new field named \p field_name into * the table \p dset_name. Note: this function requires the table * to be re-created and rewritten in its entirety, and this can result * in some unused space in the file, and can also take a great deal of * time if the table is large. * */ H5_HLDLL herr_t H5TBinsert_field(hid_t loc_id, const char *dset_name, const char *field_name, hid_t field_type, hsize_t position, const void *fill_data, const void *buf); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Deletes a field from a table * * \fg_loc_id * \param[in] dset_name The name of the table * \param[in] field_name The name of the field to delete * * \return \herr_t * * \details H5TBdelete_field() deletes a field named \p field_name from the * table \p dset_name. Note: this function requires the table to be * re-created and rewritten in its entirety, and this can result in * some unused space in the file, and can also take a great deal of * time if the table is large. * */ H5_HLDLL herr_t H5TBdelete_field(hid_t loc_id, const char *dset_name, const char *field_name); /*------------------------------------------------------------------------- * * Table attribute functions * *------------------------------------------------------------------------- */ /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Reads a table's title * * \fg_loc_id * \param[out] table_title Buffer for title name * * \return \herr_t * * \details H5TBget_title() returns the title of the table identified * by \p loc_id in a buffer \p table_title. * */ H5_HLDLL herr_t H5TBAget_title(hid_t loc_id, char *table_title); /** * -------------------------------------------------------------------------- * \ingroup H5TB * * * \brief Reads the table attribute fill values * * \fg_loc_id * \param[in] dset_name Name of table * \param[in] dset_id Table identifier * \param[out] dst_buf Buffer of fill values for table fields * * \return * \return A return value of 1 indicates that a fill value is present. * \return A return value of 0 indicates a fill value is not present. * \return A return value <0 indicates an error. * * \details H5TBget_fill() reads the table attribute fill values into * the buffer \p dst_buf for the table specified by \p dset_id * and \p dset_name located in \p loc_id. * * \par Example * \include H5TBAget_fill.c * */ H5_HLDLL htri_t H5TBAget_fill(hid_t loc_id, const char *dset_name, hid_t dset_id, unsigned char *dst_buf); #ifdef __cplusplus } #endif #endif