/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * For details of the HDF libraries, see the HDF Documentation at: * http://hdfgroup.org/HDF5/doc/ * */ #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ #include #include #include "hdf5.h" #include "h5jni.h" #include "h5lImp.h" /* * Pointer to the JNI's Virtual Machine; used for callback functions. */ extern JavaVM *jvm; typedef struct _cb_wrapper { jobject visit_callback; jobject op_data; } cb_wrapper; /********************/ /* Local Prototypes */ /********************/ static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data); /* * Class: hdf_hdf5lib_H5 * Method: H5Lcopy * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcopy(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == cur_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcopy: src name is NULL"); if (NULL == dst_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcopy: dest name is NULL"); PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcopy: src name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcopy: dest name not pinned"); if ((status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (lDstName) UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName); if (lCurName) UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); } /* end Java_hdf_hdf5lib_H5_H5Lcopy */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_external * Signature: (Ljava/lang/String;Ljava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1external(JNIEnv *env, jclass clss, jstring file_name, jstring cur_name, jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lFileName = NULL; const char *lCurName = NULL; const char *lDstName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == file_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: file name is NULL"); if (NULL == cur_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: object name is NULL"); if (NULL == dst_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_external: link name is NULL"); PIN_JAVA_STRING(ENVONLY, file_name, lFileName, NULL, "H5Lcreate_external: file name not pinned"); PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_external: object name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_external: link name not pinned"); if ((status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (lDstName) UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName); if (lCurName) UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); if (lFileName) UNPIN_JAVA_STRING(ENVONLY, file_name, lFileName); } /* end Java_hdf_hdf5lib_H5_H5Lcreate_1external */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_hard * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1hard(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == cur_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_hard: object name is NULL"); if (NULL == dst_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_hard: link name is NULL"); PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_hard: object name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_hard: link name not pinned"); if ((status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (lDstName) UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName); if (lCurName) UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); } /* end Java_hdf_hdf5lib_H5_H5Lcreate_1hard */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_soft * Signature: (Ljava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1soft(JNIEnv *env, jclass clss, jstring cur_name, jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *linkTarget = NULL; const char *linkName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == cur_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_soft: link target is NULL"); if (NULL == dst_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lcreate_soft: link name is NULL"); PIN_JAVA_STRING(ENVONLY, cur_name, linkTarget, NULL, "H5Lcreate_soft: link target not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, linkName, NULL, "H5Lcreate_soft: link name not pinned"); if ((status = H5Lcreate_soft(linkTarget, (hid_t)dst_loc_id, linkName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (linkName) UNPIN_JAVA_STRING(ENVONLY, dst_name, linkName); if (linkTarget) UNPIN_JAVA_STRING(ENVONLY, cur_name, linkTarget); } /* end Java_hdf_hdf5lib_H5_H5Lcreate_1soft */ /* * Class: hdf_hdf5lib_H5 * Method: H5Ldelete * Signature: (JLjava/lang/String;J)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ldelete(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { const char *linkName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ldelete: link name is NULL"); PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Ldelete: link name not pinned"); if ((status = H5Ldelete((hid_t)loc_id, linkName, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (linkName) UNPIN_JAVA_STRING(ENVONLY, name, linkName); } /* end Java_hdf_hdf5lib_H5_H5Ldelete */ /* * Class: hdf_hdf5lib_H5 * Method: H5Ldelete_by_idx * Signature: (JLjava/lang/String;IIJJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jlong access_id) { const char *groupName = NULL; hsize_t n = (hsize_t)link_n; herr_t status = FAIL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ldelete_by_idx: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Ldelete_by_idx: group name not pinned"); if ((status = H5Ldelete_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (groupName) UNPIN_JAVA_STRING(ENVONLY, name, groupName); } /* end Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lexists * Signature: (JLjava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Lexists(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { const char *linkName = NULL; htri_t bval = JNI_FALSE; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lexists: link name is NULL"); PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lexists: link name not pinned"); if ((bval = H5Lexists((hid_t)loc_id, linkName, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: if (linkName) UNPIN_JAVA_STRING(ENVONLY, name, linkName); return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Lexists */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_info * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5L_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { H5L_info2_t infobuf; const char *linkName = NULL; jvalue args[5]; herr_t status = FAIL; jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_info: link name is NULL"); PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_info: link name not pinned"); if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* * Set the last argument based upon whether this is a hard link (which returns object tokens) * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate * constructor to instantiate an H5L_info_t object. */ if (infobuf.type == H5L_TYPE_HARD) { jobject token; /* Create an H5O_token_t object */ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); args[0].i = infobuf.type; args[1].z = infobuf.corder_valid; args[2].j = infobuf.corder; args[3].i = infobuf.cset; args[4].l = token; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); } else { args[0].i = infobuf.type; args[1].z = infobuf.corder_valid; args[2].j = infobuf.corder; args[3].i = infobuf.cset; args[4].j = (jlong)infobuf.u.val_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); } done: if (linkName) UNPIN_JAVA_STRING(ENVONLY, name, linkName); return ret_obj; } /* end Java_hdf_hdf5lib_H5_H5Lget_1info */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_info_by_idx * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5L_info_t; */ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jlong access_id) { H5L_info2_t infobuf; const char *groupName = NULL; jvalue args[5]; herr_t status = FAIL; jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_info_by_idx: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_info_by_idx: group name not pinned"); if ((status = H5Lget_info_by_idx2((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* * Set the last argument based upon whether this is a hard link (which returns object tokens) * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate * constructor to instantiate an H5L_info_t object. */ if (infobuf.type == H5L_TYPE_HARD) { jobject token; /* Create an H5O_token_t object */ if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); args[0].i = infobuf.type; args[1].z = infobuf.corder_valid; args[2].j = infobuf.corder; args[3].i = infobuf.cset; args[4].l = token; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); } else { args[0].i = infobuf.type; args[1].z = infobuf.corder_valid; args[2].j = infobuf.corder; args[3].i = infobuf.cset; args[4].j = (jlong)infobuf.u.val_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); } done: if (groupName) UNPIN_JAVA_STRING(ENVONLY, name, groupName); return ret_obj; } /* end Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_name_by_idx * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jlong access_id) { const char *groupName = NULL; jstring str = NULL; ssize_t status_size = -1; char * linkName = NULL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_name_by_idx: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_name_by_idx: group name not pinned"); /* Get the length of the link name */ if ((status_size = H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)NULL, (size_t)0, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* add extra space for the null terminator */ if (NULL == (linkName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name"); if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); linkName[status_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkName))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); done: if (linkName) HDfree(linkName); if (groupName) UNPIN_JAVA_STRING(ENVONLY, name, groupName); return str; } /* end Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_value * Signature: (JLjava/lang/String;[Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id) { H5L_info2_t infobuf; const char *file_name = NULL; const char *obj_name = NULL; const char *linkName = NULL; jstring str; herr_t status; char * linkValue = NULL; UNUSED(clss); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_value: link name is NULL"); infobuf.type = H5L_TYPE_ERROR; PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_value: link name not pinned"); /* Get the length of the link value */ if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported"); if (NULL == (linkValue = (char *)HDmalloc(sizeof(char) * infobuf.u.val_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value"); if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); linkValue[infobuf.u.val_size] = '\0'; switch (infobuf.type) { case H5L_TYPE_SOFT: { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkValue))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } case H5L_TYPE_EXTERNAL: { if ((status = H5Lunpack_elink_val(linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, &file_name, &obj_name)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } case H5L_TYPE_ERROR: case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: invalid link type"); break; } done: if (linkValue) HDfree(linkValue); if (linkName) UNPIN_JAVA_STRING(ENVONLY, name, linkName); return infobuf.type; } /* end Java_hdf_hdf5lib_H5_H5Lget_1val */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_value_by_idx * Signature: (JLjava/lang/String;IIJ[Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jobjectArray link_value, jlong access_id) { H5L_info2_t infobuf; const char *file_name = NULL; const char *obj_name = NULL; const char *grpName = NULL; jstring str; herr_t status; void * linkValue = NULL; UNUSED(clss); infobuf.type = H5L_TYPE_ERROR; if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lget_val_by_idx: group name not pinned"); /* Get the length of the link value */ if ((status = H5Lget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported"); if (!infobuf.u.val_size) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (linkValue = (void *)HDmalloc(infobuf.u.val_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value"); if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); ((char *)linkValue)[infobuf.u.val_size] = '\0'; switch (infobuf.type) { case H5L_TYPE_SOFT: { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, (char *)linkValue))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } case H5L_TYPE_EXTERNAL: { if ((status = H5Lunpack_elink_val((char *)linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, (const char **)&file_name, (const char **)&obj_name)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } case H5L_TYPE_ERROR: case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type"); break; } done: if (linkValue) HDfree(linkValue); if (grpName) UNPIN_JAVA_STRING(ENVONLY, name, grpName); return infobuf.type; } /* end Java_hdf_hdf5lib_H5_H5Lget_1val_1by_1idx */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lmove * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lmove(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == cur_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lmove: src name is NULL"); if (NULL == dst_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lmove: dest name is NULL"); PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lmove: src name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lmove: dest name not pinned"); if ((status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (lDstName) UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName); if (lCurName) UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); } /* end Java_hdf_hdf5lib_H5_H5Lmove */ /* * Shim function for link iteration and link visiting which */ static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; jmethodID mid; jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; JNIEnv * cbenv = NULL; jclass cbcls; jvalue args[5]; void * op_data = (void *)wrapper->op_data; jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5L_iterate_cb: failed to attach current thread to JVM"); } /* Get the Method ID for the "callback" function of the H5L_iterate_t class */ if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cbcls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/" "hdf5lib/callbacks/H5L_iterate_opdata_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); /* * Set the last argument based upon whether this is a hard link (which returns object tokens) * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate * constructor to instantiate an H5L_info_t object. */ if (info->type == H5L_TYPE_HARD) { jobject token; /* Create an H5O_token_t object */ if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->u.token, FALSE))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); args[0].i = info->type; args[1].z = info->corder_valid; args[2].j = info->corder; args[3].i = info->cset; args[4].l = token; CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, cb_info_t); } else { args[0].i = info->type; args[1].z = info->corder_valid; args[2].j = info->corder; args[3].i = info->cset; args[4].j = (jlong)info->u.val_size; CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, cb_info_t); } status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); done: if (cbenv) JVMPTR->DetachCurrentThread(JVMPAR); return (herr_t)status; } /* end H5L_iterate_cb */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lvisit * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lvisit(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, jobject callback_op, jobject op_data) { cb_wrapper wrapper = {callback_op, op_data}; herr_t status = FAIL; UNUSED(clss); ENVPTR->GetJavaVM(ENVONLY, &jvm); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == op_data) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: op_data is NULL"); if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: callback_op is NULL"); if ((status = H5Lvisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, H5L_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return status; } /* end Java_hdf_hdf5lib_H5_H5Lvisit */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lvisit_by_name * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, jobject callback_op, jobject op_data, jlong access_id) { cb_wrapper wrapper = {callback_op, op_data}; const char *grpName = NULL; herr_t status = FAIL; UNUSED(clss); ENVPTR->GetJavaVM(ENVONLY, &jvm); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == op_data) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: op_data is NULL"); if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: callback_op is NULL"); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lvisit_by_name: group name not pinned"); if ((status = H5Lvisit_by_name2((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (grpName) UNPIN_JAVA_STRING(ENVONLY, name, grpName); return status; } /* end Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name */ /* * Class: hdf_hdf5lib_H5 * Method: H5Literate * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Literate(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, jlong idx, jobject callback_op, jobject op_data) { cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; herr_t status = FAIL; UNUSED(clss); ENVPTR->GetJavaVM(ENVONLY, &jvm); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == op_data) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: op_data is NULL"); if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: callback_op is NULL"); if ((status = H5Literate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, &start_idx, H5L_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return status; } /* end Java_hdf_hdf5lib_H5_H5Literate */ /* * Class: hdf_hdf5lib_H5 * Method: H5Literate_by_name * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Literate_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, jlong idx, jobject callback_op, jobject op_data, jlong access_id) { cb_wrapper wrapper = {callback_op, op_data}; const char *groupName = NULL; hsize_t start_idx = (hsize_t)idx; herr_t status = FAIL; UNUSED(clss); ENVPTR->GetJavaVM(ENVONLY, &jvm); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == op_data) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: op_data is NULL"); if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: callback_op is NULL"); if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: group name is NULL"); PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Literate_by_name: group name not pinned"); if ((status = H5Literate_by_name2((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, &start_idx, H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (groupName) UNPIN_JAVA_STRING(ENVONLY, name, groupName); return status; } /* end Java_hdf_hdf5lib_H5_H5Literate_1by_1name */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lis_registered * Signature: (I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lis_1registered(JNIEnv *env, jclass clss, jint link_cls_id) { htri_t ret_val = FAIL; UNUSED(clss); if ((ret_val = H5Lis_registered((H5L_type_t)link_cls_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (int)ret_val; } /* end Java_hdf_hdf5lib_H5_H5Lis_1registered */ /* * Class: hdf_hdf5lib_H5 * Method: H5Lunregister * Signature: (I)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lunregister(JNIEnv *env, jclass clss, jint link_cls_id) { UNUSED(clss); if (H5Lunregister((H5L_type_t)link_cls_id) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return; } /* end Java_hdf_hdf5lib_H5_H5Lunregister */ #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */