/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * For details of the HDF libraries, see the HDF Documentation at: * http://hdfgroup.org/HDF5/doc/ * */ #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ #include #include "hdf5.h" #include "h5jni.h" #include "h5pFCPLImp.h" /* * Pointer to the JNI's Virtual Machine; used for callback functions. */ /* extern JavaVM *jvm; */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_userblock * Signature: (JJ)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1userblock(JNIEnv *env, jclass clss, jlong plist, jlong size) { long sz = (long)size; herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_userblock * Signature: (J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1userblock(JNIEnv *env, jclass clss, jlong plist, jlongArray size) { jboolean isCopy; hsize_t s; jlong *theArray = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == size) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_userblock: size is NULL"); PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_userblock: size not pinned"); if ((status = H5Pget_userblock((hid_t)plist, &s)) < 0) H5_LIBRARY_ERROR(ENVONLY); theArray[0] = (jlong)s; done: if (theArray) UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_sizes * Signature: (JII)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1sizes(JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_sizes * Signature: (J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1sizes(JNIEnv *env, jclass clss, jlong plist, jlongArray size) { jboolean isCopy; jlong *theArray = NULL; jsize arrLen; size_t ss; size_t sa; herr_t status = FAIL; UNUSED(clss); if (NULL == size) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size is NULL"); if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size array length < 0"); } if (arrLen < 2) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size input array < 2 elements"); PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sizes: size not pinned"); if ((status = H5Pget_sizes((hid_t)plist, &sa, &ss)) < 0) H5_LIBRARY_ERROR(ENVONLY); theArray[0] = (jlong)sa; theArray[1] = (jlong)ss; done: if (theArray) UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_sym_k * Signature: (JII)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_sym_k * Signature: (J[I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jintArray size) { jboolean isCopy; jsize arrLen; jint *theArray = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == size) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size is NULL"); if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size array length < 0"); } if (arrLen < 2) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size < 2 elements"); PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sym_k: size not pinned"); if ((status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (theArray) UNPIN_INT_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_istore_k * Signature: (JI)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jint ik) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_istore_k * Signature: (J[I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jintArray ik) { jboolean isCopy; jint *theArray = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL == ik) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_store_k: ik is NULL"); PIN_INT_ARRAY(ENVONLY, ik, theArray, &isCopy, "H5Pget_store_k: size not pinned"); if ((status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (theArray) UNPIN_INT_ARRAY(ENVONLY, ik, theArray, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_file_space_page_size * Signature: (JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size) { UNUSED(clss); if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return; } /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_page_size * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id) { hsize_t fsp_size = 0; UNUSED(clss); if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)fsp_size; } /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_file_space_strategy * Signature: (JIZJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold) { UNUSED(clss); if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (bool)persist, (hsize_t)threshold) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return; } /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy * Signature: (J[Z[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold) { H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */ jboolean isCopy; jboolean *persistArray = NULL; jlong *thresholdArray = NULL; herr_t status = FAIL; UNUSED(clss); if (persist) PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned"); if (threshold) PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, "H5Pget_file_space: threshold not pinned"); if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (bool *)persistArray, (hsize_t *)thresholdArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (thresholdArray) UNPIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, (status < 0) ? JNI_ABORT : 0); if (persistArray) UNPIN_BOOL_ARRAY(ENVONLY, persist, persistArray, (status < 0) ? JNI_ABORT : 0); return (jint)thestrategy; } /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy_persist * Signature: (J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist(JNIEnv *env, jclass clss, jlong fcpl_id) { bool persist = false; herr_t status = FAIL; UNUSED(clss); if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &persist, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jboolean)persist; } /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy_threshold * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold(JNIEnv *env, jclass clss, jlong fcpl_id) { hsize_t threshold = 0; herr_t status = FAIL; UNUSED(clss); if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &threshold)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)threshold; } /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_nindexes * Signature: (JI)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong plist_id, jint nindexes) { herr_t retVal = FAIL; UNUSED(clss); if (nindexes > H5O_SHMESG_MAX_NINDEXES) H5_BAD_ARGUMENT_ERROR( ENVONLY, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES"); if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_nindexes * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong fcpl_id) { unsigned nindexes; UNUSED(clss); if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)nindexes; } /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_index * Signature: (JIII)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jint mesg_type_flags, jint min_mesg_size) { unsigned nindexes; /* Number of SOHM indexes */ herr_t retVal = FAIL; UNUSED(clss); /* Check arguments */ if ((unsigned)mesg_type_flags > H5O_SHMESG_ALL_FLAG) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags"); /* Read the current number of indexes */ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Range check */ if ((unsigned)index_num >= nindexes) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index"); if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned)mesg_type_flags, (unsigned)min_mesg_size)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_index * Signature: (JI[I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info) { jboolean isCopy; unsigned nindexes; /* Number of SOHM indexes */ jint *theArray = NULL; herr_t retVal = FAIL; UNUSED(clss); if (NULL == mesg_info) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: mesg_info is NULL"); /* Read the current number of indexes */ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Range check */ if ((unsigned)index_num >= nindexes) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index"); PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned"); if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (theArray) UNPIN_INT_ARRAY(ENVONLY, mesg_info, theArray, (retVal < 0) ? JNI_ABORT : 0); return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_phase_change * Signature: (JII)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree) { herr_t retVal = FAIL; UNUSED(clss); /* Check that values are sensible. The min_btree value must be no greater * than the max list plus one. * * Range check to make certain they will fit into encoded form. */ if (max_list + 1 < min_btree) H5_BAD_ARGUMENT_ERROR( ENVONLY, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value"); if (max_list > H5O_SHMESG_MAX_LIST_SIZE) H5_BAD_ARGUMENT_ERROR( ENVONLY, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE"); if (min_btree > H5O_SHMESG_MAX_LIST_SIZE) H5_BAD_ARGUMENT_ERROR( ENVONLY, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE"); if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */ /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_phase_change * Signature: (J[I)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size) { jboolean isCopy; jint *theArray = NULL; herr_t retVal = FAIL; UNUSED(clss); if (NULL == size) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_phase_change: size is NULL"); PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned"); if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (theArray) UNPIN_INT_ARRAY(ENVONLY, size, theArray, (retVal < 0) ? JNI_ABORT : 0); return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */ #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */