/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * For details of the HDF libraries, see the HDF Documentation at: * http://hdfgroup.org/HDF5/doc/ * */ #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ #include #include "hdf5.h" #include "h5jni.h" #include "h5sImp.h" /* * Pointer to the JNI's Virtual Machine; used for callback functions. */ /* extern JavaVM *jvm; */ /* * Class: hdf_hdf5lib_H5 * Method: _H5Screate * Signature: (I)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Screate(JNIEnv *env, jclass clss, jint type) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); if ((retVal = H5Screate((H5S_class_t)type)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5__1H5Screate */ /* * Class: hdf_hdf5lib_H5 * Method: _H5Screate_simple * Signature: (I[J[J)G */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *env, jclass clss, jint rank, jlongArray dims, jlongArray maxdims) { jboolean isCopy; hsize_t *sa = NULL; hsize_t *msa = NULL; hsize_t *lp = NULL; jlong *dimsP = NULL, *maxdimsP = NULL; jlong *jlp = NULL; jsize drank = 0, mrank = 0; int i; hid_t retVal = H5I_INVALID_HID; UNUSED(clss); if (rank < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: rank is invalid"); if (NULL == dims) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims is NULL"); if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims array length < 0"); } if (drank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims rank is invalid"); if (NULL != maxdims) { if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims array length < 0"); } if (mrank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims rank is invalid"); } PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned"); if (NULL == (sa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer"); jlp = (jlong *)dimsP; for (i = 0; i < rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ if (NULL == maxdims) { maxdimsP = NULL; msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned"); if (NULL == (msa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer"); jlp = (jlong *)maxdimsP; for (i = 0; i < mrank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } if ((retVal = H5Screate_simple(rank, (const hsize_t *)sa, (const hsize_t *)msa)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (msa) free(msa); if (maxdimsP) UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT); if (sa) free(sa); if (dimsP) UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT); return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5__1H5Screate_1simple */ /* * Class: hdf_hdf5lib_H5 * Method: _H5Scopy * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Scopy(JNIEnv *env, jclass clss, jlong space_id) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); if ((retVal = H5Scopy(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5__1H5Scopy */ #ifdef notdef /* 10/28/99 -- added code to copy the array -- this is not used, * but serves as a reminder in case we try to implement this in * the future.... */ /* * Note: the argument coord is actually long coord[][], which has been * flattened by the caller. */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_elements * Signature: (JII[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coords) { jboolean isCopy; hssize_t *sa = NULL; jlong *P = NULL; jint i; int rank; herr_t status = FAIL; UNUSED(clss); if (NULL == coords) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL"); PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned"); if (NULL == (sa = (hssize_t *)malloc((size_t)num_elemn * 2 * sizeof(hssize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); for (i = 0; i < (num_elemn * 2); i++) { sa[i] = P[i]; } /* end for */ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, num_elemn, (const hssize_t **)&sa)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (sa) free(sa); if (P) UNPIN_LONG_ARRAY(ENVONLY, coords, P, JNI_ABORT); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */ #endif /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_elements * Signature: (JII[B)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coords) { jboolean isCopy; hsize_t *lp = NULL; hsize_t *llp = NULL; jlong *jlp = NULL; jbyte *P = NULL; jsize size; int ii; int nlongs; herr_t status = FAIL; UNUSED(clss); if (NULL == coords) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL"); PIN_BYTE_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned"); if ((size = ENVPTR->GetArrayLength(ENVONLY, coords)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords array length < 0"); } nlongs = (int)((size_t)size / sizeof(jlong)); if (NULL == (lp = (hsize_t *)malloc((size_t)nlongs * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); jlp = (jlong *)P; llp = lp; for (ii = 0; ii < nlongs; ii++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (llp) free(llp); if (P) UNPIN_BYTE_ARRAY(ENVONLY, coords, P, JNI_ABORT); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_all * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1all(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Sselect_all(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1all */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_none * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1none(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Sselect_none(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1none */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_valid * Signature: (J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1valid(JNIEnv *env, jclass clss, jlong space_id) { htri_t bval = JNI_FALSE; UNUSED(clss); if ((bval = H5Sselect_valid(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1valid */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_npoints * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints(JNIEnv *env, jclass clss, jlong space_id) { hssize_t retVal = -1; UNUSED(clss); if ((retVal = H5Sget_simple_extent_npoints(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_npoints * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints(JNIEnv *env, jclass clss, jlong space_id) { hssize_t retVal = -1; UNUSED(clss); if ((retVal = H5Sget_select_npoints(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_type * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1type(JNIEnv *env, jclass clss, jlong space_id) { int retVal = -1; UNUSED(clss); if (H5S_SEL_ERROR == (retVal = H5Sget_select_type(space_id))) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1type */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_ndims * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims(JNIEnv *env, jclass clss, jlong space_id) { int retVal = -1; UNUSED(clss); if ((retVal = H5Sget_simple_extent_ndims(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_dims * Signature: (J[J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *env, jclass clss, jlong space_id, jlongArray dims, jlongArray maxdims) { jboolean isCopy; hsize_t *sa = NULL; hsize_t *msa = NULL; jlong *dimsP = NULL, *maxdimsP = NULL; int i; int rank = -1; int mrank; int status = -1; UNUSED(clss); if (NULL == dims) { dimsP = NULL; sa = (hsize_t *)dimsP; } else { PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sget_simple_extent_dims: dims not pinned"); if ((rank = (int)ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: dims array length < 0"); } if (NULL == (sa = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer"); } if (NULL == maxdims) { maxdimsP = NULL; msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sget_simple_extent_dims: maxdims not pinned"); if ((mrank = (int)ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims array length < 0"); } if (rank < 0) rank = mrank; else if (mrank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims"); if (NULL == (msa = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer"); } if ((status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL != dimsP) { for (i = 0; i < rank; i++) { dimsP[i] = (jlong)sa[i]; } /* end for */ } if (NULL != maxdimsP) { for (i = 0; i < rank; i++) { maxdimsP[i] = (jlong)msa[i]; } /* end for */ } done: if (msa) free(msa); if (maxdimsP) UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, (status < 0) ? JNI_ABORT : 0); if (sa) free(sa); if (dimsP) UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_type * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type(JNIEnv *env, jclass clss, jlong space_id) { H5S_class_t retVal = H5S_NO_CLASS; UNUSED(clss); if (space_id < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_type: space_id < 0"); if (H5S_NO_CLASS == (retVal = H5Sget_simple_extent_type(space_id))) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sset_extent_simple * Signature: (JI[J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *env, jclass clss, jlong space_id, jint rank, jlongArray dims, jlongArray maxdims) { jboolean isCopy; hsize_t *sa = NULL; hsize_t *msa = NULL; hsize_t *lp = NULL; jlong *dimsP = NULL, *maxdimsP = NULL; jlong *jlp = NULL; jsize drank, mrank; int i; herr_t status = FAIL; UNUSED(clss); if (NULL == dims) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims is NULL"); if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims array length < 0"); } if (drank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims rank is invalid"); if (NULL != maxdims) { if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims array length < 0"); } if (mrank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims rank is invalid"); } PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned"); if (NULL == (sa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer"); jlp = (jlong *)dimsP; for (i = 0; i < rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ if (NULL == maxdims) { maxdimsP = NULL; msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned"); if (NULL == (msa = lp = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer"); jlp = (jlong *)maxdimsP; for (i = 0; i < rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } if ((status = H5Sset_extent_simple(space_id, rank, (hsize_t *)sa, (hsize_t *)msa)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (msa) free(msa); if (maxdimsP) UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT); if (sa) free(sa); if (dimsP) UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sis_simple * Signature: (J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1simple(JNIEnv *env, jclass clss, jlong space_id) { htri_t bval = JNI_FALSE; UNUSED(clss); if ((bval = H5Sis_simple(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sis_1simple */ /* * Class: hdf_hdf5lib_H5 * Method: H5Soffset_simple * Signature: (J[B)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Soffset_1simple(JNIEnv *env, jclass clss, jlong space_id, jbyteArray offset) { jboolean isCopy; hssize_t *sa = NULL; hssize_t *lp = NULL; size_t rank; jsize i; jbyte *P = NULL; jlong *jlp = NULL; herr_t status = FAIL; UNUSED(clss); if (NULL != offset) { PIN_BYTE_ARRAY(ENVONLY, offset, P, &isCopy, "H5Soffset_simple: offset not pinned"); if ((i = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Soffset_simple: offset array length < 0"); } rank = (size_t)i / sizeof(jlong); if (NULL == (sa = lp = (hssize_t *)malloc((size_t)rank * sizeof(hssize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer"); jlp = (jlong *)P; for (i = 0; (size_t)i < rank; i++) { *lp = (hssize_t)*jlp; lp++; jlp++; } /* end for */ } else { P = NULL; sa = (hssize_t *)P; } if ((status = H5Soffset_simple(space_id, sa)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (sa) free(sa); if (P) UNPIN_BYTE_ARRAY(ENVONLY, offset, P, JNI_ABORT); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Soffset_1simple */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sextent_copy * Signature: (JJ)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sextent_1copy(JNIEnv *env, jclass clss, jlong space_id, jlong src_id) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Sextent_copy(space_id, src_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sextent_1copy */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sextent_equal * Signature: (JJ)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sextent_1equal(JNIEnv *env, jclass clss, jlong space_id, jlong src_id) { htri_t bval = JNI_FALSE; UNUSED(clss); if ((bval = H5Sextent_equal(space_id, src_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sextent_1equal */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sset_extent_none * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sset_1extent_1none(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Sset_extent_none(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1none */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_hyperslab * Signature: (JI[J[J[J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, jlongArray stride, jlongArray count, jlongArray block) { jboolean isCopy; hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; hsize_t *lp = NULL; jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; jlong *jlp = NULL; jsize start_rank, stride_rank, count_rank, block_rank; int i; herr_t status = FAIL; UNUSED(clss); if (NULL == start) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start is NULL"); if (NULL == count) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count is NULL"); if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start array length < 0"); } if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count array length < 0"); } if (start_rank != count_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned"); if (NULL == (strt = lp = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer"); jlp = (jlong *)startP; for (i = 0; i < start_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned"); if (NULL == (cnt = lp = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer"); jlp = (jlong *)countP; for (i = 0; i < count_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ if (NULL == stride) { strideP = NULL; strd = (hsize_t *)strideP; } else { if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride array length < 0"); } if (stride_rank != start_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned"); if (NULL == (strd = lp = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer"); jlp = (jlong *)strideP; for (i = 0; i < stride_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ } if (NULL == block) { blockP = NULL; blk = (hsize_t *)blockP; } else { if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block array length < 0"); } if (block_rank != start_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned"); if (NULL == (blk = lp = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer"); jlp = (jlong *)blockP; for (i = 0; i < block_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } if ((status = H5Sselect_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, (const hsize_t *)strd, (const hsize_t *)cnt, (const hsize_t *)blk)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (blk) free(blk); if (blockP) UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT); if (strd) free(strd); if (strideP) UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT); if (cnt) free(cnt); if (countP) UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT); if (strt) free(strt); if (startP) UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sclose * Signature: (J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Sclose(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; UNUSED(clss); if ((retVal = H5Sclose(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)retVal; } /* end Java_hdf_hdf5lib_H5__1H5Sclose */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_hyper_nblocks * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks(JNIEnv *env, jclass clss, jlong spaceid) { hssize_t retVal = -1; UNUSED(clss); if ((retVal = H5Sget_select_hyper_nblocks((hid_t)spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_elem_npoints * Signature: (J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints(JNIEnv *env, jclass clss, jlong spaceid) { hssize_t retVal = -1; UNUSED(clss); if ((retVal = H5Sget_select_elem_npoints((hid_t)spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_hyper_blocklist * Signature: (JJJ[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist(JNIEnv *env, jclass clss, jlong spaceid, jlong startblock, jlong numblocks, jlongArray buf) { jboolean isCopy; hsize_t *ba = NULL; size_t i, buf_size; jlong *bufP = NULL; jsize buflen; int rank; herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf is NULL"); if (numblocks < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: numblocks < 0"); if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (rank == 0) rank = 1; if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf array length < 0"); } if (buflen < (numblocks * rank)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buffer input array too small"); PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_hyper_blocklist: buffer not pinned"); buf_size = (size_t)numblocks * (size_t)2 * (size_t)rank * sizeof(hsize_t); if (NULL == (ba = (hsize_t *)malloc(buf_size))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer"); if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t)startblock, (hsize_t)numblocks, (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (buf_size / sizeof(hsize_t)); i++) { bufP[i] = (jlong)ba[i]; } /* end for */ done: if (ba) free(ba); if (bufP) UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_elem_pointlist * Signature: (JJJ[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist(JNIEnv *env, jclass clss, jlong spaceid, jlong startpoint, jlong numpoints, jlongArray buf) { jboolean isCopy; hsize_t *ba = NULL; jlong *bufP = NULL; jsize buflen; int i, rank; herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer is NULL"); if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (rank == 0) rank = 1; if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buf array length < 0"); } if (buflen < (numpoints * rank)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer input array too small"); PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned"); if (NULL == (ba = (hsize_t *)malloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer"); if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (numpoints * rank); i++) { bufP[i] = (jlong)ba[i]; } /* end for */ done: if (ba) free(ba); if (bufP) UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end if */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_bounds * Signature: (J[J[J)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds(JNIEnv *env, jclass clss, jlong spaceid, jlongArray start, jlongArray end) { jboolean isCopy; hsize_t *strt = NULL; hsize_t *en = NULL; size_t i; jlong *startP = NULL, *endP = NULL; jsize rank; herr_t status = FAIL; UNUSED(clss); if (NULL == start) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start is NULL"); if (NULL == end) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: end is NULL"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_select_bounds: start not pinned"); if ((rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start array length < 0"); } if (NULL == (strt = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer"); PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned"); if (NULL == (en = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer"); if ((status = H5Sget_select_bounds((hid_t)spaceid, (hsize_t *)strt, (hsize_t *)en)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (size_t)rank; i++) { startP[i] = (jlong)strt[i]; endP[i] = (jlong)en[i]; } /* end for */ done: if (en) free(en); if (endP) UNPIN_LONG_ARRAY(ENVONLY, end, endP, (status < 0) ? JNI_ABORT : 0); if (strt) free(strt); if (startP) UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sencode * Signature: (J)[B */ JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Sencode(JNIEnv *env, jclass clss, jlong obj_id) { unsigned char *bufPtr = NULL; size_t buf_size = 0; herr_t status = FAIL; jbyteArray returnedArray = NULL; UNUSED(clss); if (obj_id < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: invalid object ID"); if ((status = H5Sencode2(obj_id, NULL, &buf_size, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (buf_size == 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0"); if (NULL == (bufPtr = (unsigned char *)calloc((size_t)1, buf_size))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer"); if ((status = H5Sencode2((hid_t)obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (returnedArray = ENVPTR->NewByteArray(ENVONLY, (jsize)buf_size))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->SetByteArrayRegion(ENVONLY, returnedArray, 0, (jsize)buf_size, (jbyte *)bufPtr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); done: if (bufPtr) free(bufPtr); return returnedArray; } /* end Java_hdf_hdf5lib_H5_H5Sencode */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sdecode * Signature: ([B)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sdecode(JNIEnv *env, jclass clss, jbyteArray buf) { jboolean isCopy; jbyte *bufP = NULL; hid_t sid = H5I_INVALID_HID; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sdecode: buffer is NULL"); PIN_BYTE_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sdecode: buffer not pinned"); if ((sid = H5Sdecode(bufP)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (bufP) UNPIN_BYTE_ARRAY(ENVONLY, buf, bufP, JNI_ABORT); return (jlong)sid; } /* end Java_hdf_hdf5lib_H5_H5Sdecode */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sis_regular_hyperslab * Signature: (J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong obj_id) { htri_t bval = JNI_FALSE; UNUSED(clss); if ((bval = H5Sis_regular_hyperslab((hid_t)obj_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_regular_hyperslab * Signature: (J[J[J[J[J)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, jlongArray stride, jlongArray count, jlongArray block) { jboolean isCopy; hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; jsize start_rank = -1, stride_rank = -1, count_rank = -1, block_rank = -1; int i, rank = -1; herr_t status = FAIL; UNUSED(clss); if (space_id < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: invalid dataspace ID"); if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == start) { startP = NULL; strt = (hsize_t *)startP; } else { if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start array length < 0"); } if (start_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned"); if (NULL == (strt = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer"); } if (NULL == stride) { strideP = NULL; strd = (hsize_t *)strideP; } else { if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride array length < 0"); } if (stride_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned"); if (NULL == (strd = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer"); } if (NULL == count) { countP = NULL; cnt = (hsize_t *)countP; } else { if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count array length < 0"); } if (count_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned"); if (NULL == (cnt = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer"); } if (NULL == block) { blockP = NULL; blk = (hsize_t *)blockP; } else { if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block array length < 0"); } if (block_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned"); if (NULL == (blk = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer"); } if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *)strt, (hsize_t *)strd, (hsize_t *)cnt, (hsize_t *)blk)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < start_rank; i++) { startP[i] = (jlong)strt[i]; countP[i] = (jlong)cnt[i]; strideP[i] = (jlong)strd[i]; blockP[i] = (jlong)blk[i]; } /* end for */ done: if (blk) free(blk); if (blockP) UNPIN_LONG_ARRAY(ENVONLY, block, blockP, (status < 0) ? JNI_ABORT : 0); if (cnt) free(cnt); if (countP) UNPIN_LONG_ARRAY(ENVONLY, count, countP, (status < 0) ? JNI_ABORT : 0); if (strd) free(strd); if (strideP) UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, (status < 0) ? JNI_ABORT : 0); if (strt) free(strt); if (startP) UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0); return; } /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_copy * Signature: (JJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *env, jclass clss, jlong dst_id, jlong src_id) { herr_t status = FAIL; UNUSED(clss); if ((status = H5Sselect_copy((hid_t)dst_id, (hid_t)src_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1copy */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_shape_same * Signature: (JJ)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *env, jclass clss, jlong space1_id, jlong space2_id) { htri_t bval = JNI_FALSE; UNUSED(clss); if ((bval = H5Sselect_shape_same((hid_t)space1_id, (hid_t)space2_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; done: return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_adjust * Signature: (J[J)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id, jlongArray offset) { jboolean isCopy; hssize_t *offst = NULL; jlong *offsetP = NULL; jsize offset_rank = -1; int i, rank = -1; herr_t status = FAIL; UNUSED(clss); if (space_id < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: invalid dataspace ID"); if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == offset) { offsetP = NULL; offst = (hssize_t *)offsetP; } else { if ((offset_rank = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset length < 0"); } if (offset_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, offset, offsetP, &isCopy, "H5Sselect_adjust: offset not pinned"); if (NULL == (offst = (hssize_t *)malloc((size_t)offset_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_adjust: failed to allocate offset buffer"); } if ((status = H5Sselect_adjust(space_id, (hssize_t *)offst)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < offset_rank; i++) { offsetP[i] = (jlong)offst[i]; } /* end for */ done: if (offst) free(offst); if (offsetP) UNPIN_LONG_ARRAY(ENVONLY, offset, offsetP, (status < 0) ? JNI_ABORT : 0); return; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1adjust */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_intersect_block * Signature: (J[J[J)Z */ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, jlongArray end) { htri_t bval = JNI_FALSE; jboolean isCopy; hsize_t *strt = NULL, *nd = NULL; jlong *startP = NULL, *endP = NULL; jsize start_rank = -1, end_rank = -1; int i, rank = -1; UNUSED(clss); if (space_id < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: invalid dataspace ID"); if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == start) { startP = NULL; strt = (hsize_t *)startP; } else { if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: start length < 0"); } if (start_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: start rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_intersect_block: start not pinned"); if (NULL == (strt = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate start buffer"); } if (NULL == end) { endP = NULL; nd = (hsize_t *)endP; } else { if ((end_rank = ENVPTR->GetArrayLength(ENVONLY, end)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: end array length < 0"); } if (end_rank != rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: end rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sselect_intersect_block: end not pinned"); if (NULL == (nd = (hsize_t *)malloc((size_t)end_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate end buffer"); } if ((bval = H5Sselect_intersect_block(space_id, (hsize_t *)strt, (hsize_t *)nd)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; for (i = 0; i < start_rank; i++) { startP[i] = (jlong)strt[i]; endP[i] = (jlong)nd[i]; } /* end for */ done: if (strt) free(strt); if (startP) UNPIN_LONG_ARRAY(ENVONLY, start, startP, (bval < 0) ? JNI_ABORT : 0); if (nd) free(nd); if (endP) UNPIN_LONG_ARRAY(ENVONLY, end, endP, (bval < 0) ? JNI_ABORT : 0); return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block */ /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_project_intersection * Signature: (JJJ)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *env, jclass clss, jlong src_space_id, jlong dst_space_id, jlong src_intersect_space_id) { hid_t sid = H5I_INVALID_HID; UNUSED(clss); if ((sid = H5Sselect_project_intersection(src_space_id, dst_space_id, src_intersect_space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)sid; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection */ /* * Class: hdf_hdf5lib_H5 * Method: H5Scombine_hyperslab * Signature: (JI[J[J[J[J)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, jlongArray stride, jlongArray count, jlongArray block) { jboolean isCopy; hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; hsize_t *lp = NULL; jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; jlong *jlp = NULL; jsize start_rank, stride_rank, count_rank, block_rank; int i; hid_t sid = H5I_INVALID_HID; UNUSED(clss); if (NULL == start) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start is NULL"); if (NULL == count) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count is NULL"); if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start array length < 0"); } if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count array length < 0"); } if (start_rank != count_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Scombine_hyperslab: start not pinned"); if (NULL == (strt = lp = (hsize_t *)malloc((size_t)start_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate start buffer"); jlp = (jlong *)startP; for (i = 0; i < start_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Scombine_hyperslab: count not pinned"); if (NULL == (cnt = lp = (hsize_t *)malloc((size_t)count_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate count buffer"); jlp = (jlong *)countP; for (i = 0; i < count_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ if (NULL == stride) { strideP = NULL; strd = (hsize_t *)strideP; } else { if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride array length < 0"); } if (stride_rank != start_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Scombine_hyperslab: stride not pinned"); if (NULL == (strd = lp = (hsize_t *)malloc((size_t)stride_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate stride buffer"); jlp = (jlong *)strideP; for (i = 0; i < stride_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ } if (NULL == block) { blockP = NULL; blk = (hsize_t *)blockP; } else { if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block array length < 0"); } if (block_rank != start_rank) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block and start have different rank!"); PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Scombine_hyperslab: block not pinned"); if (NULL == (blk = lp = (hsize_t *)malloc((size_t)block_rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate block buffer"); jlp = (jlong *)blockP; for (i = 0; i < block_rank; i++) { *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } if ((sid = H5Scombine_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, (const hsize_t *)strd, (const hsize_t *)cnt, (const hsize_t *)blk)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (blk) free(blk); if (blockP) UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT); if (strd) free(strd); if (strideP) UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT); if (cnt) free(cnt); if (countP) UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT); if (strt) free(strt); if (startP) UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT); return (jlong)sid; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */ /* * Class: hdf_hdf5lib_H5 * Method: H5Smodify_select * Signature: (JIJ)V */ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) { herr_t status = FAIL; UNUSED(clss); if ((status = H5Smodify_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return; } /* end Java_hdf_hdf5lib_H5_H5Smodify_1select */ /* * Class: hdf_hdf5lib_H5 * Method: H5Scombine_select * Signature: (JIJ)J */ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) { hid_t sid = H5I_INVALID_HID; UNUSED(clss); if ((sid = H5Scombine_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jlong)sid; } /* end Java_hdf_hdf5lib_H5_H5Scombine_1select */ #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */