/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.HDFNativeData; import hdf.hdf5lib.callbacks.H5A_iterate_cb; import hdf.hdf5lib.callbacks.H5A_iterate_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5Arw { @Rule public TestName testname = new TestName(); private static final String H5_INTS_FILE = "tintsattrs.h5"; private static final String H5_FLTS_FILE = "tfloatsattrs.h5"; private static final int DIM_X = 8; private static final int DIM8_Y = 8; private static final int DIM16_Y = 16; private static final int DIM32_Y = 32; private static final int DIM64_Y = 64; private static final int DIM128_Y = 128; private static final String DATASETU08 = "DU08BITS"; private static final String DATASETS08 = "DS08BITS"; private static final String DATASETU16 = "DU16BITS"; private static final String DATASETS16 = "DS16BITS"; private static final String DATASETU32 = "DU32BITS"; private static final String DATASETS32 = "DS32BITS"; private static final String DATASETU64 = "DU64BITS"; private static final String DATASETS64 = "DS64BITS"; private static final String DATASETF32 = "DS32BITS"; private static final String DATASETF64 = "DS64BITS"; private static final String DATASETF128 = "DS128BITS"; private static final int RANK = 2; long H5fid = HDF5Constants.H5I_INVALID_HID; long H5aid = HDF5Constants.H5I_INVALID_HID; long H5did = HDF5Constants.H5I_INVALID_HID; private final void _closeH5file() throws HDF5LibraryException { if (H5aid >= 0) try { H5.H5Aclose(H5aid); } catch (Exception ex) { } if (H5did >= 0) try { H5.H5Dclose(H5did); } catch (Exception ex) { } if (H5fid > 0) try { H5.H5Fclose(H5fid); } catch (Exception ex) { } } public void openH5file(String filename, String dsetname) { try { H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Arw._openH5file: " + err); } assertTrue("TestH5Arw._openH5file: H5.H5Fopen: ", H5fid >= 0); try { H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Arw._openH5file: " + err); } assertTrue("TestH5Arw._openH5file: H5.H5Dopen: ", H5did >= 0); try { H5aid = H5.H5Aopen(H5did, dsetname, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Arw._openH5file: " + err); } assertTrue("TestH5Arw._openH5file: H5.H5Aopen: ", H5aid >= 0); } @After public void closeH5file() throws HDF5LibraryException { if (H5aid >= 0) try { H5.H5Aclose(H5aid); } catch (Exception ex) { } if (H5did >= 0) try { H5.H5Dclose(H5did); } catch (Exception ex) { } if (H5fid > 0) try { H5.H5Fclose(H5fid); } catch (Exception ex) { } H5fid = HDF5Constants.H5I_INVALID_HID; H5did = HDF5Constants.H5I_INVALID_HID; H5aid = HDF5Constants.H5I_INVALID_HID; System.out.println(); } @Before public void verifyCount() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } @Test public void testH5Aread_8bit_ints() { byte[][] attr_data = new byte[DIM_X][DIM8_Y]; try { openH5file(H5_INTS_FILE, DATASETU08); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_8bit_ints: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT8, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_8bit_ints: H5Aread: " + err); } // End access to the attribute and release resources used by it. try { H5.H5Aclose(H5aid); } catch (Exception err) { err.printStackTrace(); } // End access to the dataset and release resources used by it. try { H5.H5Dclose(H5did); } catch (Exception err) { err.printStackTrace(); } // Open an existing dataset. try { H5did = H5.H5Dopen(H5fid, DATASETS08, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_8bit_ints: H5Dopen: " + err); } // Open an existing attribute. try { H5aid = H5.H5Aopen(H5did, DATASETS08, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_8bit_ints: H5Aopen: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT8, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_8bit_ints: H5Aread: " + err); } } @Test public void testH5Aread_16bit_ints() { short[][] attr_data = new short[DIM_X][DIM16_Y]; try { openH5file(H5_INTS_FILE, DATASETU16); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_16bit_ints: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT16, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_16bit_ints: H5Aread: " + err); } // End access to the attribute and release resources used by it. try { H5.H5Aclose(H5aid); } catch (Exception err) { err.printStackTrace(); } // End access to the dataset and release resources used by it. try { H5.H5Dclose(H5did); } catch (Exception err) { err.printStackTrace(); } // Open an existing dataset. try { H5did = H5.H5Dopen(H5fid, DATASETS16, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_16bit_ints: H5Dopen: " + err); } // Open an existing attribute. try { H5aid = H5.H5Aopen(H5did, DATASETS16, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_16bit_ints: H5Aopen: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT16, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_16bit_ints: H5Aread: " + err); } } @Test public void testH5Aread_32bit_ints() { int[][] attr_data = new int[DIM_X][DIM16_Y]; try { openH5file(H5_INTS_FILE, DATASETU32); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_32bit_ints: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT32, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_32bit_ints: H5Aread: " + err); } // End access to the attribute and release resources used by it. try { H5.H5Aclose(H5aid); } catch (Exception err) { err.printStackTrace(); } // End access to the dataset and release resources used by it. try { H5.H5Dclose(H5did); } catch (Exception err) { err.printStackTrace(); } // Open an existing dataset. try { H5did = H5.H5Dopen(H5fid, DATASETS32, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_32bit_ints: H5Dopen: " + err); } // Open an existing attribute. try { H5aid = H5.H5Aopen(H5did, DATASETS32, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_32bit_ints: H5Aopen: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT32, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_32bit_ints: H5Aread: " + err); } } @Test public void testH5Aread_64bit_ints() { long[][] attr_data = new long[DIM_X][DIM64_Y]; try { openH5file(H5_INTS_FILE, DATASETU64); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_64bit_ints: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_UINT64, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_64bit_ints: H5Aread: " + err); } // End access to the attribute and release resources used by it. try { H5.H5Aclose(H5aid); } catch (Exception err) { err.printStackTrace(); } // End access to the dataset and release resources used by it. try { H5.H5Dclose(H5did); } catch (Exception err) { err.printStackTrace(); } // Open an existing dataset. try { H5did = H5.H5Dopen(H5fid, DATASETS64, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_64bit_ints: H5Dopen: " + err); } // Open an existing attribute. try { H5aid = H5.H5Aopen(H5did, DATASETS64, HDF5Constants.H5P_DEFAULT); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_64bit_ints: H5Aopen: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_INT64, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_64bit_ints: H5Aread: " + err); } } @Test public void testH5Aread_32bit_floats() { float[][] attr_data = new float[DIM_X][DIM32_Y]; try { openH5file(H5_FLTS_FILE, DATASETF32); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_32bit_floats: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_FLOAT, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_32bit_floats: H5Aread: " + err); } for (int i = 0; i < DIM_X; i++) assertTrue("testH5Aread_32bit_floats - H5.H5Aread: ", attr_data[i][0] == (32 - i)); } @Test public void testH5Aread_64bit_floats() { double[][] attr_data = new double[DIM_X][DIM64_Y]; try { openH5file(H5_FLTS_FILE, DATASETF64); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_64bit_floats: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_DOUBLE, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_64bit_floats: H5Aread: " + err); } for (int i = 0; i < DIM_X; i++) assertTrue("testH5Aread_64bit_floats - H5.H5Aread: ", attr_data[i][0] == (64 - i)); } @Test public void testH5Aread_128bit_floats() { byte[][][] attr_data = new byte[DIM_X][DIM128_Y][8]; try { openH5file(H5_FLTS_FILE, DATASETF128); } catch (Throwable err) { err.printStackTrace(); fail("testH5Aread_128bit_floats: openH5file: " + err); } // Read data. try { H5.H5Aread(H5aid, HDF5Constants.H5T_NATIVE_LDOUBLE, attr_data); } catch (Exception err) { err.printStackTrace(); fail("testH5Aread_128bit_floats: H5Aread: " + err); } } }