/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotEquals; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5F { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "testF.h5"; private static final String H5_FILE2 = "testF2.h5"; private static final int COUNT_OBJ_FILE = 1; private static final int COUNT_OBJ_DATASET = 0; private static final int COUNT_OBJ_GROUP = 0; private static final int COUNT_OBJ_DATATYPE = 0; private static final int COUNT_OBJ_ATTR = 0; private static final int COUNT_OBJ_ALL = (COUNT_OBJ_FILE + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR); private static final int[] OBJ_COUNTS = {COUNT_OBJ_FILE, COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, COUNT_OBJ_DATATYPE, COUNT_OBJ_ATTR, COUNT_OBJ_ALL}; private static final int[] OBJ_TYPES = {HDF5Constants.H5F_OBJ_FILE, HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL}; long H5fid = HDF5Constants.H5I_INVALID_HID; private final void _deleteFile(String filename) { File file = new File(filename); if (file.exists()) { try { file.delete(); } catch (SecurityException e) { } } } @Before public void createH5file() throws HDF5LibraryException, NullPointerException { assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5fid > 0) { try { H5.H5Fclose(H5fid); } catch (Exception ex) { } H5fid = HDF5Constants.H5I_INVALID_HID; } _deleteFile(H5_FILE); System.out.println(); } @Test public void testH5Fget_create_plist() { long plist = HDF5Constants.H5I_INVALID_HID; try { plist = H5.H5Fget_create_plist(H5fid); } catch (Throwable err) { fail("H5.H5Fget_create_plist: " + err); } assertTrue(plist > 0); try { H5.H5Pclose(plist); } catch (HDF5LibraryException e) { e.printStackTrace(); } } @Test(expected = HDF5LibraryException.class) public void testH5Fget_create_plist_closed() throws Throwable { if (H5fid > 0) { try { H5.H5Fclose(H5fid); } catch (Exception ex) { } } // it should fail because the file was closed. H5.H5Fget_create_plist(H5fid); } @Test public void testH5Fget_access_plist() { long plist = HDF5Constants.H5I_INVALID_HID; try { plist = H5.H5Fget_access_plist(H5fid); } catch (Throwable err) { fail("H5.H5Fget_access_plist: " + err); } assertTrue(plist > 0); try { H5.H5Pclose(plist); } catch (HDF5LibraryException e) { e.printStackTrace(); } } @Test(expected = HDF5LibraryException.class) public void testH5Fget_access_plist_closed() throws Throwable { if (H5fid > 0) { try { H5.H5Fclose(H5fid); } catch (Exception ex) { } } // it should fail because the file was closed. H5.H5Fget_access_plist(H5fid); } @Test public void testH5Fget_intent_rdwr() { int intent = 0; if (H5fid > 0) { try { H5.H5Fclose(H5fid); } catch (Exception ex) { } H5fid = HDF5Constants.H5I_INVALID_HID; } try { H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { intent = H5.H5Fget_intent(H5fid); } catch (Throwable err) { fail("H5.H5Fget_intent: " + err); } assertEquals(HDF5Constants.H5F_ACC_RDWR, intent); } @Test public void testH5Fget_intent_rdonly() { int intent = 0; if (H5fid > 0) { try { H5.H5Fclose(H5fid); } catch (Exception ex) { } H5fid = HDF5Constants.H5I_INVALID_HID; } try { H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { intent = H5.H5Fget_intent(H5fid); } catch (Throwable err) { fail("H5.H5Fget_intent: " + err); } assertEquals(HDF5Constants.H5F_ACC_RDONLY, intent); } @Test public void testH5Fget_fileno_same() { long fileno1 = 0; long fileno2 = 0; long fid1 = HDF5Constants.H5I_INVALID_HID; long fid2 = HDF5Constants.H5I_INVALID_HID; try { fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(fid1, HDF5Constants.H5F_SCOPE_LOCAL); assertTrue("H5Fcreate failed", fid1 > 0); fid2 = H5.H5Fopen(H5_FILE2, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); assertTrue("H5Fopen failed", fid2 > 0); fileno1 = H5.H5Fget_fileno(fid1); assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0); fileno2 = H5.H5Fget_fileno(fid2); assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0); assertEquals("fileno1[" + fileno1 + "]!=fileno2[" + fileno2 + "]", fileno1, fileno2); } catch (Throwable err) { fail("testH5Fget_fileno_same: " + err); } finally { H5.H5Fclose(fid1); H5.H5Fclose(fid2); } } @Test public void testH5Fget_fileno_diff() { long fileno1 = 0; long fileno2 = 0; long fid2 = HDF5Constants.H5I_INVALID_HID; try { fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(fid2, HDF5Constants.H5F_SCOPE_LOCAL); assertTrue("H5Fcreate failed", fid2 > 0); fileno1 = H5.H5Fget_fileno(H5fid); assertTrue("H5Fget_fileno1=" + fileno1, fileno1 > 0); fileno2 = H5.H5Fget_fileno(fid2); assertTrue("H5Fget_fileno2=" + fileno2, fileno2 > 0); assertNotEquals("fileno1[" + fileno1 + "]==fileno2[" + fileno2 + "]", fileno1, fileno2); } catch (Throwable err) { fail("testH5Fget_fileno_diff: " + err); } finally { H5.H5Fclose(fid2); } } @Test public void testH5Fget_obj_count() { long count = -1; for (int i = 0; i < OBJ_TYPES.length; i++) { try { count = H5.H5Fget_obj_count(H5fid, OBJ_TYPES[i]); } catch (Throwable err) { fail("H5.H5Fget_obj_count: " + err); } assertEquals(count, OBJ_COUNTS[i]); } } @Test public void testH5Fget_obj_ids() { long count = 0; long max_objs = 100; long[] obj_id_list = new long[(int)max_objs]; int[] open_obj_counts = new int[OBJ_TYPES.length]; for (int i = 0; i < OBJ_TYPES.length; i++) open_obj_counts[i] = 0; open_obj_counts[0] = 1; for (int i = 0; i < OBJ_TYPES.length - 1; i++) open_obj_counts[OBJ_TYPES.length - 1] += open_obj_counts[i]; for (int i = 0; i < OBJ_TYPES.length; i++) { try { count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs, obj_id_list); } catch (Throwable err) { fail("H5.H5Fget_obj_ids: " + err); } assertEquals(count, open_obj_counts[i]); } } /** * TODO: need to add objects to the file after H5G[D,T]create() functions * are implemented. */ // // @Test // public void testH5Fmount_unmount() { // String file1 = "src.h5"; // String file2 = "dst.h5"; // String group1 = "/G"; // String group2 = "/MOUNTED"; // // _createH5File(file1); // _createH5File(file2); // // int fid1 = _openFile(file1, HDF5Constants.H5F_ACC_RDWR); // assertTrue(fid1 > 0); // // int fid2 = _openFile(file2, HDF5Constants.H5F_ACC_RDWR); // assertTrue(fid2 > 0); // // // create a group at file1 // int gid = _createGroup(fid1, group1); // try { H5.H5Gclose(gid); } catch (Exception ex) {} // // // create a group at file 2 // gid = _createGroup(fid2, group2); // try { H5.H5Gclose(gid); } catch (Exception ex) {} // // // before mount, "/G/MOUNTED" does not exists in file1 // gid = _openGroup(fid1, group1+group2); // assertTrue(gid < 0); // // // Mount file2 under G in the file1 // try { // H5.H5Fmount(fid1, group1, fid2, HDF5Constants.H5P_DEFAULT); // } // catch (Throwable err) { // fail("H5.H5Fmount: "+err); // } // // // now file1 should have group "/G/MOUNTED" // gid = _openGroup(fid1, group1+group2); // assertTrue(gid > 0); // try { H5.H5Gclose(gid); } catch (Exception ex) {} // // // unmount file2 from file1 // try { // H5.H5Funmount(fid1, group1); // } // catch (Throwable err) { // fail("H5.H5Funmount: "+err); // } // // // file2 was unmounted from file1, "/G/MOUNTED" does not exists in file1 // gid = _openGroup(fid1, group1+group2); // assertTrue(gid < 0); // // try { H5.H5Fclose(fid1); } catch (Exception ex) {} // try { H5.H5Fclose(fid2); } catch (Exception ex) {} // // _deleteFile(file1); // _deleteFile(file2); // } }