/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package test; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5G_info_t; import hdf.hdf5lib.structs.H5O_token_t; import org.junit.After; import org.junit.Before; import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; public class TestH5G { @Rule public TestName testname = new TestName(); private static final String H5_FILE = "testG.h5"; private static final String H5_FILE2 = "testG2.h5"; private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" }; private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"}; long H5fid = -1; long H5fid2 = -1; private final long _createGroup(long fid, String name) { long gid = -1; try { gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } assertTrue("TestH5G._createGroup: ", gid > 0); return gid; } private final long _createGroup2(long fid, String name) { long gid = -1; long gcpl = -1; try { gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl } catch (final Exception ex) { fail("H5.H5Pcreate(): " + ex); } assertTrue("TestH5G._createGroup2: ", gcpl >= 0); try { H5.H5Pset_link_creation_order(gcpl, HDF5Constants.H5P_CRT_ORDER_TRACKED + HDF5Constants.H5P_CRT_ORDER_INDEXED); // Set link creation order } catch (final Exception ex) { try {H5.H5Pclose(gcpl);} catch (final Exception exx) {} fail("H5.H5Pset_link_creation_order: " + ex); } try { gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, gcpl, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } finally { try {H5.H5Pclose(gcpl);} catch (final Exception ex) {} } assertTrue("TestH5G._createGroup2: ", gid > 0); return gid; } private final long _openGroup(long fid, String name) { long gid = -1; try { gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { gid = -1; err.printStackTrace(); fail("H5.H5Gopen: " + err); } assertTrue("TestH5G._openGroup: ", gid > 0); return gid; } private final void _deleteFile(String filename) { File file = new File(filename); if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } @Before public void createH5file() throws HDF5LibraryException, NullPointerException { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); System.out.print(testname.getMethodName()); try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.createH5file: " + err); } assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid > 0); assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid2 > 0); long gid = -1; for (int i = 0; i < GROUPS.length; i++) { gid = _createGroup(H5fid, GROUPS[i]); try {H5.H5Gclose(gid);} catch (Exception ex) {} } for (int i = 0; i < GROUPS2.length; i++) { gid = _createGroup2(H5fid2, GROUPS2[i]); try {H5.H5Gclose(gid);} catch (Exception ex) {} } H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5fid > 0) { try {H5.H5Fclose(H5fid);} catch (Exception ex) {} } if (H5fid2 > 0) { try {H5.H5Fclose(H5fid2);} catch (Exception ex) {} } _deleteFile(H5_FILE); _deleteFile(H5_FILE2); System.out.println(); } @Test public void testH5Gopen() { long gid = -1; for (int i = 0; i < GROUPS.length; i++) { try { gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gopen: H5.H5Gopen: " + err); } assertTrue("TestH5G.testH5Gopen: ", gid > 0); try { H5.H5Gclose(gid); } catch (Exception ex) { } } } @Test public void testH5Gget_create_plist() { long gid = -1; long pid = -1; for (int i = 0; i < GROUPS.length; i++) { try { gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_create_plist: H5.H5Gopen: " + err); } assertTrue("TestH5G.testH5Gget_create_plist: ", gid > 0); try { pid = H5.H5Gget_create_plist(gid); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_create_plist: H5.H5Gget_create_plist: " + err); } assertTrue("TestH5G.testH5Gget_create_plist: ", pid > 0); try { H5.H5Gclose(gid); } catch (Exception ex) { } } } @Test public void testH5Gget_info() { H5G_info_t info = null; for (int i = 0; i < GROUPS.length; i++) { try { info = H5.H5Gget_info(H5fid); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_info: H5.H5Gget_info: " + err); } assertNotNull("TestH5G.testH5Gget_info: ", info); } } @Test public void testH5Gget_info_by_name() { H5G_info_t info = null; for (int i = 0; i < GROUPS.length; i++) { try { info = H5.H5Gget_info_by_name(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_info_by_name: H5.H5Gget_info_by_name: " + err); } assertNotNull("TestH5G.testH5Gget_info_by_name: ", info); } } @Test public void testH5Gget_info_by_idx() { H5G_info_t info = null; for (int i = 0; i < 2; i++) { try { info = H5.H5Gget_info_by_idx(H5fid, "/G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_info_by_idx: H5.H5Gget_info_by_idx: " + err); } assertNotNull("TestH5G.testH5Gget_info_by_idx: ", info); } } @Test public void testH5Gget_obj_info_all() { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[0]); try { info = H5.H5Gget_info(gid); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_info: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } assertNotNull("TestH5G.testH5Gget_obj_info_all: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(H5fid, GROUPS[0], objNames, objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all: H5.H5Gget_obj_info_all: " + err); } assertTrue("number found[" + names_found + "] different than expected[" + objNames.length + "]", names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { assertNotNull("name #" + i + " does not exist", objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all: ", objNames[i].length() > 0); } } @Test public void testH5Gget_obj_info_all_gid() { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[0]); try { info = H5.H5Gget_info(gid); assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_obj_info_all: " + err); } assertTrue("TestH5G.testH5Gget_obj_info_all_gid: number found[" + names_found + "] different than expected[" + objNames.length + "]", names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { assertNotNull("TestH5G.testH5Gget_obj_info_all_gid: name #" + i + " does not exist", objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all_gid: ", objNames[i].length() > 0); } } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid: H5.H5Gget_info: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } } @Test public void testH5Gget_obj_info_all_gid2() { H5G_info_t info = null; long gid = _openGroup(H5fid, GROUPS[1]); try { info = H5.H5Gget_info(gid); assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_all(gid, null, objNames, objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_obj_info_all: " + err); } assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: number found[" + names_found + "] different than expected[" + objNames.length + "]", names_found == objNames.length); for (int i = 0; i < objNames.length; i++) { assertNotNull("TestH5G.testH5Gget_obj_info_all_gid2: name #" + i + " does not exist", objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_all_gid2: ", objNames[i].length() > 0); } } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_gid2: H5.H5Gget_info: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } } @Test public void testH5Gget_obj_info_max() { long gid = _openGroup(H5fid, GROUPS[0]); long groups_max_size = GROUPS.length + 1; String objNames[] = new String[(int)groups_max_size]; int objTypes[] = new int[(int)groups_max_size]; int lnkTypes[] = new int[(int)groups_max_size]; H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_max: H5.H5Gget_obj_info_max: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } // expected number does not include root group assertTrue("TestH5G.testH5Gget_obj_info_max: number found[" + names_found + "] different than expected[" + (GROUPS.length - 1) + "]", names_found == (GROUPS.length - 1)); for (int i = 0; i < GROUPS.length-1; i++) { assertNotNull("TestH5G.testH5Gget_obj_info_max: name #"+i+" does not exist",objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_max: ", objNames[i].length()>0); } } @Test public void testH5Gget_obj_info_max_limit() { long gid = _openGroup(H5fid, GROUPS[0]); long groups_max_size = GROUPS.length - 3; String objNames[] = new String[(int)groups_max_size]; int objTypes[] = new int[(int)groups_max_size]; int lnkTypes[] = new int[(int)groups_max_size]; H5O_token_t objTokens[] = new H5O_token_t[(int)groups_max_size]; int names_found = 0; try { names_found = H5.H5Gget_obj_info_max(gid, objNames, objTypes, lnkTypes, objTokens, groups_max_size); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_max_limit: H5.H5Gget_obj_info_max: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } assertTrue("TestH5G.testH5Gget_obj_info_max_limit: number found[" + names_found + "] different than expected[" + groups_max_size + "]", names_found == groups_max_size); for (int i = 0; i < objNames.length; i++) { assertNotNull("TestH5G.testH5Gget_obj_info_max_limit: name #" + i + " does not exist", objNames[i]); assertTrue("TestH5G.testH5Gget_obj_info_max_limit: ", objNames[i].length() > 0); } } @Test public void testH5Gget_obj_info_all_byIndexType() { H5G_info_t info = null; long gid = _openGroup(H5fid2, GROUPS2[0]); try { info = H5.H5Gget_info(gid); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_info: " + err); } finally { try {H5.H5Gclose(gid);} catch (Exception ex) { } } assertNotNull("TestH5G.testH5Gget_obj_info_all_byIndexType: ", info); assertTrue("TestH5G.testH5Gget_obj_info_all_byIndexType: number of links is empty", info.nlinks > 0); String objNames[] = new String[(int) info.nlinks]; int objTypes[] = new int[(int) info.nlinks]; int lnkTypes[] = new int[(int) info.nlinks]; H5O_token_t objTokens[] = new H5O_token_t[(int) info.nlinks]; try { H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_CRT_ORDER); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err); } assertEquals("G12",objNames[1]); assertEquals("G13", objNames[2] ); assertEquals("G11", objNames[3] ); try { H5.H5Gget_obj_info_all(H5fid2, GROUPS2[0], objNames, objTypes, lnkTypes, objTokens, HDF5Constants.H5_INDEX_NAME); } catch (Throwable err) { err.printStackTrace(); fail("TestH5G.testH5Gget_obj_info_all_byIndexType: H5.H5Gget_obj_info_all: " + err); } assertEquals("G12",objNames[1]); assertEquals("G13", objNames[2] ); assertEquals("G14", objNames[3] ); } }